Prupe.1G121600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000621
Physical Location & Seq
Forward (+)
9557232 .. 9558028
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G121600.1

Sequence Viewer

Length: 471 bp
ATGTACGAGCACTGTAGTCCAGAGTCAATGTTGTACAATACCAACTGTGTTAGTAGAACTAATCCTGGACTACCTTATCCTTATCCAGGTTATCCCCCTGCACCTGCTCCACATCAACATGTGGTTTATTCTCCAGTTCCTCCTGCCCCTCCATATCCATATCACGGTCAATATTTTACTGTTCCAGTTCCTGGACATGGCTATCACTATCCAGCCCAGCTTGCTCCAGCTGCATATGATCCTCCTCCTAAAGCCAAGCCCAACAAAAGAAAAGCTGTCAAACAAACAACCTATAAAGTTTGCGGAAATCCAGTTACGCAAAACAAAGGGGATAACCGCAGAATTTTCAACATTCGCATTAGGTGCGGTCGTCGGGATTTAAGTAATGAAGAGGATGAAGAAGAAAAAGAAGAGGAAGTTGAATTCGAGTATTGTTGTCGTGACATGAAAGATGAAGAAGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.94

Weight (kDa)

5.7

Isoelectric Point (pI)

82.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 3 cut(s) 303, 337, 366
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 2 cut(s) 342, 422
AfaI GTAC 2 cut(s) 5, 35
AfiI CCNNNNNNNGG 4 cut(s) 86, 164, 191, 197
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 2 cut(s) 349, 422
AjnI CCWGG 3 cut(s) 64, 85, 190
AluBI AGCT 3 cut(s) 220, 230, 275
AluI AGCT 3 cut(s) 220, 230, 275
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 342, 422
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 3 cut(s) 66, 87, 192
BfmI CTRYAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 3 cut(s) 66, 87, 192
BmrFI CCNGG 3 cut(s) 66, 87, 192
BpmI CTGGAG 2 cut(s) 117, 210
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 164, 191, 197
Bse1I ACTGG 3 cut(s) 134, 185, 311
BseBI CCWGG 3 cut(s) 66, 87, 192
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 4 cut(s) 86, 164, 191, 197
BseNI ACTGG 3 cut(s) 134, 185, 311
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 86, 164, 191, 197
Bsp1286I GDGCHC 1 cut(s) 12
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 3 cut(s) 303, 337, 366
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 3 cut(s) 134, 185, 311
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 3 cut(s) 66, 87, 192
Bst4CI ACNGT 4 cut(s) 14, 47, 167, 181
Bst6I CTCTTC 2 cut(s) 384, 405
BstAPI GCANNNNNTGC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 363
BstNI CCWGG 3 cut(s) 66, 87, 192
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 64, 85, 190
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 191
Csp6I GTAC 2 cut(s) 4, 34
CviAII CATG 3 cut(s) 119, 197, 445
CviJI RGCY 7 cut(s) 201, 215, 220, 230, 254, 259, 275
CviKI_1 RGCY 7 cut(s) 201, 215, 220, 230, 254, 259, 275
CviQI GTAC 2 cut(s) 4, 34
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 384, 405
EarI CTCTTC 2 cut(s) 384, 405
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 64, 85, 190
FaeI CATG 3 cut(s) 122, 200, 448
FaiI YATR 8 cut(s) 120, 154, 160, 198, 235, 237, 294, 446
FatI CATG 3 cut(s) 118, 196, 444
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 2 cut(s) 117, 210
Hin1II CATG 3 cut(s) 122, 200, 448
HinfI GANTC 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 20, 374, 440
Hpy99I CGWCG 1 cut(s) 375
HpyCH4III ACNGT 4 cut(s) 14, 47, 167, 181
HpyCH4V TGCA 2 cut(s) 101, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 363
Hsp92II CATG 3 cut(s) 122, 200, 448
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 112, 229
Lsp1109I GCAGC 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 313, 440
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 6 cut(s) 401, 410, 413, 422, 467, 470
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 342, 422
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 6 cut(s) 150, 159, 252, 255, 385, 406
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 66, 87, 192
MvaI CCWGG 3 cut(s) 66, 87, 192
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 363
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 122, 200, 448
NmuCI GTSAC 1 cut(s) 440
NspI RCATGY 1 cut(s) 122
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 191
PfoI TCCNGGA 2 cut(s) 64, 190
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PscI ACATGT 1 cut(s) 118
Psp6I CCWGG 3 cut(s) 64, 85, 190
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 3 cut(s) 64, 85, 190
PstNI CAGNNNCTG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 5, 35
RsaNI GTAC 2 cut(s) 4, 34
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 66, 87, 192
SduI GDGCHC 1 cut(s) 12
SetI ASST 8 cut(s) 76, 91, 106, 222, 232, 277, 293, 365
SfcI CTRYAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 2 cut(s) 342, 422
SsiI CCGC 3 cut(s) 303, 337, 366
SspI AATATT 1 cut(s) 173
StyD4I CCNGG 3 cut(s) 64, 85, 190
TaaI ACNGT 4 cut(s) 14, 47, 167, 181
TaqI TCGA 1 cut(s) 426
TasI AATT 2 cut(s) 342, 422
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 402, 411, 461, 468
TspRI CASTG 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 84
XapI RAATTY 2 cut(s) 342, 422
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.