RchiOBHm_Chr4g0416301

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000621
Physical Location & Seq
Reverse (-)
41187792 .. 41188623
832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38646

Sequence Viewer

Length: 762 bp
ATGTTACAGAGTTTGAAGGATTATTCTGGTGAGAAAATACTGTGGAAGCTTGGGCCCTTTGGAACAGAAAGCGGAGGGGAAAGTTTTGATGATGGAGCTCATTCAACAGTCAGGCAGTTGCTGATAGCTCACGATGGAGTTGGCGTTGGCACCATCCAGATTGAATATGATGTCAACGGGATCTCATTTCGGGCAGACAAGTATGGTGATCAGACAGGGTCTGACCATATTGACACGGTAAGTCCAGTCATCAAGCTTGATTATCCGTACGAATATCTGATTTCAGTTCATGGAAGATATTGTAAGTTTTGGCCCTTGACAACCGTTATTTCCTCCCTTACTTTTAGGAGCAACAAGAAAAGTTACGGACCATATGGAAATGAAGACCAACATGATAAGTCTTTTTCAATCCAAGCACCTGGGAATATGATTGTCGGCTTTCATGGTAGGGCTTCTGGGTTTAAGGGTATCCGTGCAATAGGAGCGTACCTGAAACCTATTGATCATCATTATCAGAATGGAAAGTACAATCTCGATGTCATGCCGGCATTACCAAAACCATCAAATCCTCTGCGTCAAGCTAGATATCCTTCTCAGACCAACCTCAGAAACAAACAAGATGACGGCGAAGATGACAAACAATTAACATACATAATTGCCGGTAACCAAGTCAACGGAAACGAGGGCGACCGGAATGGAGGTTTCGTTGTTGGAAGTAACATTAATTACATCTTACACCCTGAACTATGGCGGAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

253

Amino Acids

28.21

Weight (kDa)

6.5

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 163 8e-31 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 2 cut(s) 72, 751
AclWI GGATC 1 cut(s) 188
AfaI GTAC 3 cut(s) 269, 488, 527
AgsI TTSAA 4 cut(s) 16, 105, 164, 408
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 5 cut(s) 49, 98, 128, 256, 581
AluI AGCT 5 cut(s) 49, 98, 128, 256, 581
Alw21I GWGCWC 1 cut(s) 100
AlwI GGATC 1 cut(s) 188
AlwNI CAGNNNCTG 2 cut(s) 121, 221
AoxI GGCC 2 cut(s) 53, 311
ApaI GGGCCC 1 cut(s) 57
AseI ATTAAT 1 cut(s) 723
AspS9I GGNCC 4 cut(s) 53, 54, 312, 368
AsuHPI GGTGA 2 cut(s) 41, 218
AvaII GGWCC 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 57, 100
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 100
BccI CCATC 4 cut(s) 86, 128, 161, 568
BceAI ACGGC 1 cut(s) 640
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 479
BclI TGATCA 2 cut(s) 208, 502
BfaI CTAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 4 cut(s) 53, 54, 312, 368
BmiI GGNNCC 2 cut(s) 55, 151
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 690
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 690, 720
Bse118I RCCGGY 2 cut(s) 544, 659
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 608, 619
BseNI ACTGG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 691
BshFI GGCC 2 cut(s) 55, 313
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 691
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 3 cut(s) 545, 660, 691
BsiWI CGTACG 1 cut(s) 267
BsnI GGCC 2 cut(s) 55, 313
Bsp120I GGGCCC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 57, 100
Bsp143I GATC 3 cut(s) 180, 208, 502
BspACI CCGC 2 cut(s) 72, 751
BspANI GGCC 2 cut(s) 55, 313
BspCNI CTCAG 2 cut(s) 607, 618
BspLI GGNNCC 2 cut(s) 55, 151
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 544, 659
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 2 cut(s) 544, 659
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 3 cut(s) 180, 208, 502
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 4 cut(s) 42, 109, 238, 325
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 594, 605
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 3 cut(s) 183, 211, 505
BstMBI GATC 3 cut(s) 180, 208, 502
BstMCI CGRYCG 1 cut(s) 691
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 180
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 2 cut(s) 55, 313
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 2 cut(s) 121, 221
Cfr10I RCCGGY 2 cut(s) 544, 659
Cfr13I GGNCC 4 cut(s) 53, 54, 312, 368
CseI GACGC 1 cut(s) 563
Csp6I GTAC 3 cut(s) 268, 487, 526
CviAII CATG 4 cut(s) 290, 392, 443, 541
CviJI RGCY 9 cut(s) 49, 55, 98, 128, 256, 313, 438, 452, 581
CviKI_1 RGCY 9 cut(s) 49, 55, 98, 128, 256, 313, 438, 452, 581
CviQI GTAC 3 cut(s) 268, 487, 526
DdeI CTNAG 2 cut(s) 594, 605
DpnI GATC 3 cut(s) 182, 210, 504
DpnII GATC 3 cut(s) 180, 208, 502
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 57, 100
Eco32I GATATC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 587
EcoT38I GRGCYC 2 cut(s) 57, 100
FaeI CATG 4 cut(s) 293, 395, 446, 544
FatI CATG 4 cut(s) 289, 391, 442, 540
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 208, 502
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 2 cut(s) 57, 100
FspBI CTAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 55, 313
HapII CCGG 3 cut(s) 545, 660, 691
HgaI GACGC 1 cut(s) 563
Hin1II CATG 4 cut(s) 293, 395, 446, 544
HincII GTYRAC 2 cut(s) 175, 673
HindII GTYRAC 2 cut(s) 175, 673
HindIII AAGCTT 2 cut(s) 47, 254
HpaII CCGG 3 cut(s) 545, 660, 691
HphI GGTGA 2 cut(s) 41, 218
Hpy166II GTNNAC 2 cut(s) 175, 673
Hpy188I TCNGA 6 cut(s) 213, 223, 279, 516, 597, 608
Hpy188III TCNNGA 3 cut(s) 131, 157, 533
Hpy8I GTNNAC 2 cut(s) 175, 673
HpyAV CCTTC 2 cut(s) 10, 600
HpyCH4III ACNGT 4 cut(s) 42, 109, 238, 325
HpyCH4V TGCA 1 cut(s) 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 594, 605
Hsp92II CATG 4 cut(s) 293, 395, 446, 544
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Ksp22I TGATCA 2 cut(s) 208, 502
Kzo9I GATC 3 cut(s) 180, 208, 502
LmnI GCTCC 3 cut(s) 95, 348, 482
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 3, 362, 662, 716
MalI GATC 3 cut(s) 182, 210, 504
MboI GATC 3 cut(s) 180, 208, 502
MboII GAAGA 3 cut(s) 306, 395, 641
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 57, 100
MluCI AATT 3 cut(s) 641, 654, 724
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 6 cut(s) 68, 343, 579, 614, 676, 692
MroNI GCCGGC 1 cut(s) 544
MseI TTAA 4 cut(s) 462, 644, 723, 760
MspI CCGG 3 cut(s) 545, 660, 691
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 482
NaeI GCCGGC 1 cut(s) 546
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 180, 208, 502
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 4 cut(s) 293, 395, 446, 544
NlaIV GGNNCC 2 cut(s) 55, 151
PdiI GCCGGC 1 cut(s) 546
Pfl23II CGTACG 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 418
PspEI GGTNACC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 418
PspLI CGTACG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 55, 151
PspOMI GGGCCC 1 cut(s) 53
PspPI GGNCC 4 cut(s) 53, 54, 312, 368
PstNI CAGNNNCTG 2 cut(s) 121, 221
PsuI RGATCY 1 cut(s) 180
PsyI GACNNNGTC 1 cut(s) 217
RsaI GTAC 3 cut(s) 269, 488, 527
RsaNI GTAC 3 cut(s) 268, 487, 526
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 4 cut(s) 462, 644, 723, 760
Sau3AI GATC 3 cut(s) 180, 208, 502
Sau96I GGNCC 4 cut(s) 53, 54, 312, 368
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 57, 100
SinI GGWCC 1 cut(s) 368
Sse9I AATT 3 cut(s) 641, 654, 724
SsiI CCGC 2 cut(s) 72, 751
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 4 cut(s) 42, 109, 238, 325
TaqI TCGA 1 cut(s) 534
TasI AATT 3 cut(s) 641, 654, 724
TatI WGTACW 1 cut(s) 525
Tru1I TTAA 4 cut(s) 462, 644, 723, 760
Tru9I TTAA 4 cut(s) 462, 644, 723, 760
TspDTI ATGAA 3 cut(s) 278, 396, 431
TspGWI ACGGA 4 cut(s) 255, 381, 461, 690
Tth111I GACNNNGTC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 368
VspI ATTAAT 1 cut(s) 723
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.