FvH4_4g19501

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000621
Physical Location & Seq
Reverse (-)
23156946 .. 23157398
453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19501.t1

Sequence Viewer

Length: 453 bp
ATGTTCTCAAACGGTTCTGATCCAAATCAGCCTTCGTACAATACCAACTCAGGCCCTCAAGCTCAAGCTCAACCTCCAGCTAATAATGGATATCCAGGTTATGCTCCTCCTCCTCCTGCGTCTTATGGATACTATAACCCTAACCATCCACCACAGGGCGGTTCGGCTGCTCCGCCTCCTCATGCCCCATATGGCTATTACCCTCCTCCTCTTCCGTCTTATAACAATGGACACTATGACCCTCGATTCTATCAGGCGCCAGTTCGACGTTCTGCCAAGCCGAAGACGCCTTCTAAGCCCAAGGCTGCAAGGAGCGGTCCTAAGAACGTGTCGTACAAAGTTGCAGGGAATCGGGTCAGTGGCAACACCGGGGACCATAATGGGGTTTTCAACGTTGGCAACAAGAATTCCGGTCGCTGCGTCGATGACGACGACGATGAAGATGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

151

Amino Acids

16.07

Weight (kDa)

8.58

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 256
AccBSI CCGCTC 1 cut(s) 315
AciI CCGC 3 cut(s) 159, 173, 315
AclI AACGTT 1 cut(s) 393
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 406
AcyI GRCGYC 2 cut(s) 257, 287
AfaI GTAC 2 cut(s) 38, 335
AfiI CCNNNNNNNGG 3 cut(s) 155, 158, 382
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 3 cut(s) 62, 68, 80
AluI AGCT 3 cut(s) 62, 68, 80
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 167, 305, 417
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 53, 317, 373
AsuC2I CCSGG 1 cut(s) 370
AvaII GGWCC 2 cut(s) 317, 373
BanI GGYRCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 154, 292, 404
BccI CCATC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 3 cut(s) 168, 306, 418
BlsI GCNGC 3 cut(s) 169, 307, 419
Bme1390I CCNGG 2 cut(s) 96, 370
Bme18I GGWCC 2 cut(s) 317, 373
BmgT120I GGNCC 3 cut(s) 53, 317, 373
BmiI GGNNCC 2 cut(s) 258, 374
BmrFI CCNGG 2 cut(s) 96, 370
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 42, 48
BpuMI CCSGG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 2 cut(s) 257, 287
BsaJI CCNNGG 2 cut(s) 300, 369
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 158, 382
Bse1I ACTGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 300, 369
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 3 cut(s) 155, 158, 382
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 6 cut(s) 96, 99, 102, 168, 195, 198
BseXI GCAGC 3 cut(s) 154, 292, 404
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 415
BsiSI CCGG 2 cut(s) 369, 411
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 3 cut(s) 155, 158, 382
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 3 cut(s) 159, 173, 315
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 258, 374
BspPI GGATC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 300, 369
BssMI GATC 1 cut(s) 19
BssNI GRCGYC 2 cut(s) 257, 287
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 2 cut(s) 257, 287
BstDEI CTNAG 3 cut(s) 49, 294, 321
BstF5I GGATG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 286, 295
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 94, 368
BstV1I GCAGC 3 cut(s) 154, 292, 404
BstV2I GAAGAC 1 cut(s) 290
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 364
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 3 cut(s) 53, 317, 373
CseI GACGC 3 cut(s) 108, 295, 409
Csp6I GTAC 2 cut(s) 37, 334
CviAII CATG 1 cut(s) 182
CviQI GTAC 2 cut(s) 37, 334
DdeI CTNAG 3 cut(s) 49, 294, 321
DinI GGCGCC 1 cut(s) 258
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 300
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 317, 373
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 185
FaiI YATR 9 cut(s) 102, 126, 135, 183, 190, 192, 222, 237, 378
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 181
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 168, 306, 418
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 168, 306, 418
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 168, 306, 418
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 369, 411
HgaI GACGC 3 cut(s) 108, 295, 409
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 2 cut(s) 257, 287
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 2 cut(s) 246, 349
HpaII CCGG 2 cut(s) 369, 411
Hpy188I TCNGA 1 cut(s) 19
Hpy99I CGWCG 4 cut(s) 270, 425, 434, 437
HpyAV CCTTC 2 cut(s) 42, 300
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 3 cut(s) 268, 327, 393
HpyCH4V TGCA 2 cut(s) 308, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 295
HpyF3I CTNAG 3 cut(s) 49, 294, 321
HpySE526I ACGT 3 cut(s) 268, 327, 393
Hsp92I GRCGYC 2 cut(s) 257, 287
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 3 cut(s) 109, 175, 312
Lsp1109I GCAGC 3 cut(s) 154, 292, 404
MaeII ACGT 3 cut(s) 268, 327, 393
MalI GATC 1 cut(s) 21
MbiI CCGCTC 1 cut(s) 315
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 203, 295, 452
MluCI AATT 1 cut(s) 406
Mly113I GGCGCC 1 cut(s) 257
MspI CCGG 2 cut(s) 369, 411
MspR9I CCNGG 2 cut(s) 96, 370
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 286, 295
NarI GGCGCC 1 cut(s) 257
NciI CCSGG 1 cut(s) 370
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 258, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 246, 349
PkrI GCNGC 3 cut(s) 169, 307, 419
PluTI GGCGCC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 258, 374
PspPI GGNCC 3 cut(s) 53, 317, 373
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
RsaI GTAC 2 cut(s) 38, 335
RsaNI GTAC 2 cut(s) 37, 334
SatI GCNGC 3 cut(s) 168, 306, 418
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 3 cut(s) 53, 317, 373
ScrFI CCNGG 2 cut(s) 96, 370
SetI ASST 8 cut(s) 64, 70, 76, 82, 100, 271, 330, 396
SfoI GGCGCC 1 cut(s) 258
SinI GGWCC 2 cut(s) 317, 373
SmlI CTYRAG 2 cut(s) 57, 63
SmoI CTYRAG 2 cut(s) 57, 63
Sse9I AATT 1 cut(s) 406
SsiI CCGC 3 cut(s) 159, 173, 315
SspDI GGCGCC 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 94, 368
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 3 cut(s) 271, 330, 396
TaqI TCGA 3 cut(s) 244, 265, 423
TasI AATT 1 cut(s) 406
TfiI GAWTC 2 cut(s) 246, 349
TscAI CASTG 1 cut(s) 364
TseI GCWGC 3 cut(s) 167, 305, 417
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 317, 373
XapI RAATTY 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.