Rw4G024010

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000621
Physical Location & Seq
Reverse (-)
49860595 .. 49862480
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024010.1

Sequence Viewer

Length: 957 bp
ATGGAACCAAAGAAAAAACCGTTGAAGGTTGGACCGTTTGGTTCAGATAGTGGAGGAGATCATTTTGATGACGGAGATCACTCAACGGTGAGGCAAGTGGTGATCTGTTCTAGTCTATCGTCAATTCTCTACATCCAGATTGAATATGATGACAACGGAAAATCATCTTGGTCACAGAAGCATGGTTGTAGCAATCCCATCGGAGTGGACAAAACAGAGACCATCAAGCTTGATTATCCAGATGAATATCTGACTTCAATTCACGGATATTGCACAGATAGTTGGTACTTCCCTACTTACATTACGTCACTCACCTTCACCAGCAACAGAATAGTGTACGGACCATATGGAAATTATGAAAACGAGGGAAAAAAATATTTCACAATCCAAGTCCCTGGAAGTAAGATCGTTGGGTTCCATGGCAGGTCTGATGAGTGGTTTGATCTTCGTGCATTAGGAGCTTACCTTAAGCCTGTGGTTCATACACAACAATACCCCAACAATATTAGTCCTGCACCAATTGCTCATATTGGTTATCCGGCTGCGTATAATTATACGCCGCCTCTTCCTCCTCCTCCTCCATATTATGGAAATTACTATAATAATCCTAACCAGCCACCACAAGCTGCTGCACCTACTCCGACTCCATATCCATATGGTAACTATTACGTTCCTCCACTCGGTCCTCGACCGCCATATAATAATGGATACTATGACTATCAGATGTCACAGGCACCACCACCGCCGCCGCCGCCTACTTCTCTTGGACGTCCTAGTAAGCCGAAAAGTGCTCCCAGTAAGCCCAAGGTTGCTAAAAACAATGGCCCTAAAAATGTATCTTACAGGGTTTTAGGGAATAAAGTCGGTGGAAACACAGGAGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATACTGGTCGCCACATGGAAGACGATGATGAAGACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

318

Amino Acids

35.25

Weight (kDa)

6.5

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 10 - 155 5.4e-34 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 772
Acc36I ACCTGC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 733
AccB7I CCANNNNNTGG 1 cut(s) 587
AciI CCGC 6 cut(s) 560, 692, 743, 746, 749, 752
AclI AACGTT 1 cut(s) 900
AcyI GRCGYC 1 cut(s) 769
AfaI GTAC 2 cut(s) 287, 338
AfiI CCNNNNNNNGG 2 cut(s) 587, 680
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 4 cut(s) 25, 143, 258, 898
AjnI CCWGG 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 3 cut(s) 229, 461, 626
AluI AGCT 3 cut(s) 229, 461, 626
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 2 cut(s) 212, 873
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 3 cut(s) 542, 626, 629
AspS9I GGNCC 4 cut(s) 32, 341, 683, 824
AsuHPI GGTGA 4 cut(s) 100, 112, 304, 310
AvaII GGWCC 3 cut(s) 32, 341, 683
BanI GGYRCC 1 cut(s) 733
BbsI GAAGAC 2 cut(s) 939, 951
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 3 cut(s) 529, 613, 616
BccI CCATC 2 cut(s) 206, 230
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 701
BcoDI GTCTC 2 cut(s) 212, 873
BfaI CTAG 2 cut(s) 111, 774
BfrI CTTAAG 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 7 cut(s) 543, 560, 627, 630, 746, 749, 752
BlsI GCNGC 7 cut(s) 544, 561, 628, 631, 747, 750, 753
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 3 cut(s) 32, 341, 683
BmgT120I GGNCC 4 cut(s) 32, 341, 683, 824
BmiI GGNNCC 3 cut(s) 6, 416, 735
BmrFI CCNGG 1 cut(s) 396
BmrI ACTGGG 1 cut(s) 789
BmuI ACTGGG 1 cut(s) 789
BpiI GAAGAC 2 cut(s) 939, 951
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 769
BsaI GGTCTC 2 cut(s) 212, 873
BsaJI CCNNGG 3 cut(s) 394, 418, 804
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 680
Bse1I ACTGG 2 cut(s) 795, 922
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 394, 418, 804
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 587, 680
BseNI ACTGG 2 cut(s) 795, 922
BseRI GAGGAG 4 cut(s) 69, 561, 564, 567
BseXI GCAGC 3 cut(s) 529, 613, 616
BsgI GTGCAG 2 cut(s) 498, 615
Bsh1285I CGRYCG 1 cut(s) 692
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 587, 680
BsmAI GTCTC 2 cut(s) 212, 873
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 825
Bso31I GGTCTC 2 cut(s) 212, 873
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 5 cut(s) 58, 76, 102, 405, 442
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 6 cut(s) 560, 692, 743, 746, 749, 752
BspANI GGCC 1 cut(s) 825
BspLI GGNNCC 3 cut(s) 6, 416, 735
BspMI ACCTGC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 733
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 2 cut(s) 212, 873
BsrI ACTGG 2 cut(s) 795, 922
BssECI CCNNGG 3 cut(s) 394, 418, 804
BssMI GATC 5 cut(s) 58, 76, 102, 405, 442
BssNI GRCGYC 1 cut(s) 769
BssT1I CCWWGG 2 cut(s) 418, 804
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 21, 36, 88
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 769
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 521
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 5 cut(s) 61, 79, 105, 408, 445
BstMAI GTCTC 2 cut(s) 212, 873
BstMBI GATC 5 cut(s) 58, 76, 102, 405, 442
BstMCI CGRYCG 1 cut(s) 692
BstMWI GCNNNNNNNGC 3 cut(s) 458, 521, 751
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstV1I GCAGC 3 cut(s) 529, 613, 616
BstV2I GAAGAC 2 cut(s) 939, 951
BstXI CCANNNNNNTGG 2 cut(s) 205, 395
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 414
Cfr13I GGNCC 4 cut(s) 32, 341, 683, 824
Csp6I GTAC 2 cut(s) 286, 337
CviAII CATG 3 cut(s) 182, 419, 928
CviJI RGCY 9 cut(s) 229, 461, 472, 542, 616, 626, 781, 802, 825
CviKI_1 RGCY 9 cut(s) 229, 461, 472, 542, 616, 626, 781, 802, 825
CviQI GTAC 2 cut(s) 286, 337
DpnI GATC 5 cut(s) 60, 78, 104, 407, 444
DpnII GATC 5 cut(s) 58, 76, 102, 405, 442
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 2 cut(s) 418, 804
Eco31I GGTCTC 2 cut(s) 212, 873
Eco47I GGWCC 3 cut(s) 32, 341, 683
EcoRII CCWGG 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 418, 804
ErhI CCWWGG 2 cut(s) 418, 804
FaeI CATG 3 cut(s) 185, 422, 931
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 181, 418, 927
FauNDI CATATG 2 cut(s) 346, 655
Fnu4HI GCNGC 7 cut(s) 543, 560, 627, 630, 746, 749, 752
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 7 cut(s) 543, 560, 627, 630, 746, 749, 752
FspBI CTAG 2 cut(s) 111, 774
GluI GCNGC 7 cut(s) 543, 560, 627, 630, 746, 749, 752
HaeIII GGCC 1 cut(s) 825
HapII CCGG 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 769
Hin1II CATG 3 cut(s) 185, 422, 931
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 643
HpaII CCGG 1 cut(s) 539
HphI GGTGA 4 cut(s) 100, 112, 304, 310
Hpy166II GTNNAC 2 cut(s) 208, 337
Hpy188I TCNGA 6 cut(s) 46, 203, 252, 430, 642, 723
Hpy188III TCNNGA 2 cut(s) 136, 239
Hpy8I GTNNAC 2 cut(s) 208, 337
HpyAV CCTTC 2 cut(s) 19, 325
HpyCH4III ACNGT 3 cut(s) 21, 36, 88
HpyCH4IV ACGT 4 cut(s) 305, 669, 769, 900
HpyCH4V TGCA 4 cut(s) 273, 452, 515, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 521, 751
HpySE526I ACGT 4 cut(s) 305, 669, 769, 900
Hsp92I GRCGYC 1 cut(s) 769
Hsp92II CATG 3 cut(s) 185, 422, 931
Kzo9I GATC 5 cut(s) 58, 76, 102, 405, 442
LmnI GCTCC 2 cut(s) 458, 796
Lsp1109I GCAGC 3 cut(s) 529, 613, 616
MaeI CTAG 2 cut(s) 111, 774
MaeII ACGT 4 cut(s) 305, 669, 769, 900
MaeIII GTNAC 4 cut(s) 171, 306, 659, 726
MalI GATC 5 cut(s) 60, 78, 104, 407, 444
MboI GATC 5 cut(s) 58, 76, 102, 405, 442
MboII GAAGA 4 cut(s) 437, 557, 944, 956
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 6 cut(s) 123, 258, 352, 519, 550, 592
MlyI GAGTC 1 cut(s) 637
MmeI TCCRAC 2 cut(s) 10, 665
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 2 cut(s) 66, 203
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 396
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 458, 521, 751
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 2 cut(s) 346, 655
NdeII GATC 5 cut(s) 58, 76, 102, 405, 442
NlaIII CATG 3 cut(s) 185, 422, 931
NlaIV GGNNCC 3 cut(s) 6, 416, 735
NmuCI GTSAC 3 cut(s) 171, 306, 726
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 7 cut(s) 544, 561, 628, 631, 747, 750, 753
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
Psp1406I AACGTT 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 6, 416, 735
PspPI GGNCC 4 cut(s) 32, 341, 683, 824
RsaI GTAC 2 cut(s) 287, 338
RsaNI GTAC 2 cut(s) 286, 337
RseI CAYNNNNRTG 2 cut(s) 66, 203
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 7 cut(s) 543, 560, 627, 630, 746, 749, 752
Sau3AI GATC 5 cut(s) 58, 76, 102, 405, 442
Sau96I GGNCC 4 cut(s) 32, 341, 683, 824
SchI GAGTC 1 cut(s) 637
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 1 cut(s) 793
SinI GGWCC 3 cut(s) 32, 341, 683
SmiMI CAYNNNNRTG 2 cut(s) 66, 203
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 6 cut(s) 123, 258, 352, 519, 550, 592
SsiI CCGC 6 cut(s) 560, 692, 743, 746, 749, 752
SspI AATATT 2 cut(s) 377, 505
SspMI CTAG 2 cut(s) 111, 774
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 2 cut(s) 418, 804
TaaI ACNGT 3 cut(s) 21, 36, 88
TaiI ACGT 4 cut(s) 308, 672, 772, 903
TaqI TCGA 1 cut(s) 688
TaqII GACCGA 1 cut(s) 671
TasI AATT 6 cut(s) 123, 258, 352, 519, 550, 592
TauI GCSGC 4 cut(s) 562, 748, 751, 754
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 3 cut(s) 171, 306, 726
TseI GCWGC 3 cut(s) 542, 626, 629
Tsp45I GTSAC 3 cut(s) 171, 306, 726
TspDTI ATGAA 4 cut(s) 258, 372, 470, 957
TspGWI ACGGA 4 cut(s) 87, 171, 279, 354
Van91I CCANNNNNTGG 1 cut(s) 587
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 3 cut(s) 32, 341, 683
XspI CTAG 2 cut(s) 111, 774
ZraI GACGTC 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.