Rorug04G0138500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000621
Physical Location & Seq
Forward (+)
22623875 .. 22624709
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0138500.1

Sequence Viewer

Length: 564 bp
ATGAGTACTATTTCTTGTGAAAGTTCTTCTGAAAGGGATCGACATGATGTCAATATTGAAAGGGTTCCGTATGTTGTAATGGTGGAAAACCTTGAGAAGTGGATATCACCATATACGATTATGGATTTTATTTATCTGCTAGTTTCAATCTCATGTCAAGTAATTGTTTCTCCATCTTTGTCGTTGGAGGCATATACAAGAGGAACCATCACTGTGAACAGCAGGAAGAATCTAGACAAGTTGTCTGAGTTTTTGGAGAATCCAAATCACATCATCATTTCCTCAAGGGGAAGGCCTTGGGTAGTTACTAAGAAAAGGCCAGCATTGGCTCCAATTCAAGTCTGCATGGCTAACTATCAGTATCAGAGTAGAAGAACTGAAACTAACAACGAGTTGAAGGTTGTCCTTTATGGAAATGAAGAATACGATAGAGCTAAGCTGCTGAAGGATTTAATTTGGGAATTTATTAGTCATCAAGCTCCACTTCACCAGAGGTTACTTGCTGAAGAGGCAAAGATCTATCAGCGATTCAATGCAGAAGAGTGTGATGTTTCTGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

187

Amino Acids

21.73

Weight (kDa)

5.86

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 2 cut(s) 464, 525
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 5 cut(s) 59, 147, 338, 397, 532
AhdI GACNNNNNGTC 2 cut(s) 47, 241
AluBI AGCT 3 cut(s) 434, 439, 479
AluI AGCT 3 cut(s) 434, 439, 479
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 293, 317
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 99, 479
BbvI GCAGC 1 cut(s) 426
BccI CCATC 2 cut(s) 181, 215
BfaI CTAG 3 cut(s) 140, 233, 562
BglII AGATCT 1 cut(s) 516
BisI GCNGC 1 cut(s) 440
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 7
BmeRI GACNNNNNGTC 2 cut(s) 47, 241
BmiI GGNNCC 3 cut(s) 66, 205, 330
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 113, 268
BsaJI CCNNGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 2 cut(s) 295, 319
BsnI GGCC 2 cut(s) 295, 319
Bsp143I GATC 2 cut(s) 37, 516
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 295, 319
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 66, 205, 330
BspPI GGATC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 2 cut(s) 37, 516
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 501, 534
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 3 cut(s) 246, 309, 435
BstKTI GATC 2 cut(s) 40, 519
BstMBI GATC 2 cut(s) 37, 516
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BsuRI GGCC 2 cut(s) 295, 319
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 6
CviAII CATG 3 cut(s) 44, 153, 346
CviJI RGCY 8 cut(s) 295, 319, 329, 350, 434, 439, 479, 560
CviKI_1 RGCY 8 cut(s) 295, 319, 329, 350, 434, 439, 479, 560
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 3 cut(s) 246, 309, 435
DpnI GATC 2 cut(s) 39, 518
DpnII GATC 2 cut(s) 37, 516
DriI GACNNNNNGTC 2 cut(s) 47, 241
Eam1104I CTCTTC 2 cut(s) 501, 534
Eam1105I GACNNNNNGTC 2 cut(s) 47, 241
EarI CTCTTC 2 cut(s) 501, 534
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 295
Eco32I GATATC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 464, 525
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 47, 156, 349
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 3 cut(s) 43, 152, 345
Fnu4HI GCNGC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 3 cut(s) 140, 233, 562
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 2 cut(s) 295, 319
Hin1II CATG 3 cut(s) 47, 156, 349
HinfI GANTC 3 cut(s) 229, 259, 528
HphI GGTGA 2 cut(s) 99, 479
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 31, 247, 366, 556
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 285, 391, 439
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 345, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 246, 309, 435
Hsp92II CATG 3 cut(s) 47, 156, 349
Kzo9I GATC 2 cut(s) 37, 516
LmnI GCTCC 2 cut(s) 334, 484
LpnPI CCDG 3 cut(s) 208, 333, 503
Lsp1109I GCAGC 1 cut(s) 426
MaeI CTAG 3 cut(s) 140, 233, 562
MaeIII GTNAC 2 cut(s) 304, 495
MalI GATC 2 cut(s) 39, 518
MboI GATC 2 cut(s) 37, 516
MboII GAAGA 6 cut(s) 18, 238, 384, 431, 518, 551
MflI RGATCY 1 cut(s) 516
MluCI AATT 4 cut(s) 162, 333, 453, 461
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 5 cut(s) 181, 194, 292, 486, 502
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 452
MslI CAYNNNNRTG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 509
NdeII GATC 2 cut(s) 37, 516
NlaIII CATG 3 cut(s) 47, 156, 349
NlaIV GGNNCC 3 cut(s) 66, 205, 330
PceI AGGCCT 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 229, 259, 528
PkrI GCNGC 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 66, 205, 330
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 2 cut(s) 37, 516
ScaI AGTACT 1 cut(s) 7
SetI ASST 6 cut(s) 93, 402, 436, 441, 481, 497
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 92, 283
SmoI CTYRAG 2 cut(s) 92, 283
Sse9I AATT 4 cut(s) 162, 333, 453, 461
SseBI AGGCCT 1 cut(s) 295
SspI AATATT 1 cut(s) 55
SspMI CTAG 3 cut(s) 140, 233, 562
StuI AGGCCT 1 cut(s) 295
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 40
TasI AATT 4 cut(s) 162, 333, 453, 461
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 3 cut(s) 229, 259, 528
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 461
XbaI TCTAGA 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 140, 233, 562
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.