FvH4_4g19531

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000621
Physical Location & Seq
Reverse (-)
23171615 .. 23172499
885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19531.t1

Sequence Viewer

Length: 378 bp
ATGGATATATATAGACCGGATATACTTAAGCACTCCCCATTTAGTATGAGGATTCAATATCGAACTATGAATCTCACGCATCCAATATACGAGTCTGCTATTCCATCCCCTAATAATCCCTATTTGGTTTATCCTCATTCTCCAGCTCCTGCTCATCCTGCTACTCCATGTGGATCATCATCGTCCTCGTACTATCGCGATCCGTATTATGCAGCTCCAGCTCCTGTACAGCTTGCTCCTGCTCCACCTAGTAAAAGCAAGATCAAGAGAATCAAAAGTGTAGGCAAAATAACGTCTTACACAGTCACCGGTAATCGAGTTAACCAGAACTCAGGTGACAATCATCGGATTTTCAATATTGGCGATCGCACTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

9.79

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AclWI GGATC 2 cut(s) 181, 194
AfaI GTAC 2 cut(s) 191, 228
AflII CTTAAG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 56, 355
AhlI ACTAGT 1 cut(s) 371
AluBI AGCT 4 cut(s) 146, 215, 221, 232
AluI AGCT 4 cut(s) 146, 215, 221, 232
AlwI GGATC 2 cut(s) 181, 194
AlwNI CAGNNNCTG 2 cut(s) 149, 224
ApeKI GCWGC 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 308
AsiSI GCGATCGC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 298, 347
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 249, 372
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 126, 201
BsaBI GATNNNNATC 1 cut(s) 178
BsaWI WCCGGW 2 cut(s) 16, 308
Bse118I RCCGGY 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 178
BseGI GGATG 3 cut(s) 79, 104, 154
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 367
BshTI ACCGGT 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 367
BsiSI CCGG 2 cut(s) 17, 309
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 173, 199, 261, 364
Bsp68I TCGCGA 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 344
BspFNI CGCG 1 cut(s) 198
BspPI GGATC 2 cut(s) 181, 194
BspTI CTTAAG 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 4 cut(s) 173, 199, 261, 364
Bst4CI ACNGT 1 cut(s) 304
BstAFI CTTAAG 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 79, 104, 154
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 4 cut(s) 176, 202, 264, 367
BstMBI GATC 4 cut(s) 173, 199, 261, 364
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 158, 218
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 79, 104, 154
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 2 cut(s) 149, 224
Cfr10I RCCGGY 1 cut(s) 308
Csp6I GTAC 2 cut(s) 190, 227
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 1 cut(s) 168
CviJI RGCY 4 cut(s) 146, 215, 221, 232
CviKI_1 RGCY 4 cut(s) 146, 215, 221, 232
CviQI GTAC 2 cut(s) 190, 227
DdeI CTNAG 1 cut(s) 331
DpnI GATC 4 cut(s) 175, 201, 263, 366
DpnII GATC 4 cut(s) 173, 199, 261, 364
FaeI CATG 1 cut(s) 171
FaiI YATR 9 cut(s) 8, 10, 12, 23, 47, 68, 88, 169, 210
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 3 cut(s) 66, 91, 141
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 249, 372
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 2 cut(s) 126, 201
HapII CCGG 2 cut(s) 17, 309
Hin1II CATG 1 cut(s) 171
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 4 cut(s) 52, 70, 92, 270
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 17, 309
HphI GGTGA 2 cut(s) 298, 347
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 2 cut(s) 197, 265
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 218
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 1 cut(s) 171
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 4 cut(s) 173, 199, 261, 364
LmnI GCTCC 5 cut(s) 151, 220, 226, 241, 247
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 249, 372
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 304, 335
MalI GATC 4 cut(s) 175, 201, 263, 366
MboI GATC 4 cut(s) 173, 199, 261, 364
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 3 cut(s) 42, 144, 196
MseI TTAA 3 cut(s) 27, 321, 376
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 2 cut(s) 17, 309
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 158, 218
NdeII GATC 4 cut(s) 173, 199, 261, 364
NlaIII CATG 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 304, 335
NruI TCGCGA 1 cut(s) 198
PfeI GAWTC 3 cut(s) 52, 70, 270
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 1 cut(s) 214
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PstNI CAGNNNCTG 2 cut(s) 149, 224
PvuI CGATCG 1 cut(s) 367
RgaI GCGATCGC 1 cut(s) 367
RruI TCGCGA 1 cut(s) 198
RsaI GTAC 2 cut(s) 191, 228
RsaNI GTAC 2 cut(s) 190, 227
SaqAI TTAA 3 cut(s) 27, 321, 376
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 4 cut(s) 173, 199, 261, 364
SchI GAGTC 1 cut(s) 101
SetI ASST 7 cut(s) 148, 217, 223, 234, 250, 296, 337
SfaAI GCGATCGC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 88
SgfI GCGATCGC 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 371
SspI AATATT 1 cut(s) 358
SspMI CTAG 2 cut(s) 249, 372
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 61, 316
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 3 cut(s) 52, 70, 270
Tru1I TTAA 3 cut(s) 27, 321, 376
Tru9I TTAA 3 cut(s) 27, 321, 376
TseFI GTSAC 2 cut(s) 304, 335
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 2 cut(s) 304, 335
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 192
Vha464I CTTAAG 1 cut(s) 26
XspI CTAG 2 cut(s) 249, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.