Rmu_co8225682.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8225682.1
OG0000621
Physical Location & Seq
Forward (+)
199 .. 669
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8225682.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
atggcgtattatgccgatctgatgaatccagccgtcttgttcgccgccaatggattagttccaaatcagccttcgtattatgccaactatggcgctcaagctccacctcataatggagatccaggttatgctactcctcctccttcatcttatggatactataaccctatccatccatcaccgggcggtcctggttcacctgctcatgcaccatatggctattccgctcctcctccatcttataacaatggatactatgaacatccattctatcaggagcctgttcgacgtcctagtaaacccagggctcctagtaagcccaaggcttgcactcgaaacaacataatttacagggttcaaggaaatcgagtcagtggaaacactagggaccataatggagtcttcaacgttggcaataaaaattccagtcgcgaggtggacgatcacaatgaggaagatgaagaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

156

Amino Acids

17.14

Weight (kDa)

6.28

Isoelectric Point (pI)

69.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AarI CACCTGC 1 cut(s) 208
AatII GACGTC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 432
AciI CCGC 3 cut(s) 45, 186, 225
AclI AACGTT 1 cut(s) 408
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 113, 182
AgsI TTSAA 2 cut(s) 359, 406
AjnI CCWGG 3 cut(s) 121, 190, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 188, 388
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 171, 189
AvaII GGWCC 2 cut(s) 188, 388
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 394
BccI CCATC 3 cut(s) 180, 184, 244
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 123, 192, 304
BciVI GTATCC 2 cut(s) 149, 245
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 3 cut(s) 294, 312, 384
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 2 cut(s) 149, 245
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 123, 183, 192, 304
Bme18I GGWCC 2 cut(s) 188, 388
BmgT120I GGNCC 2 cut(s) 188, 388
BmiI GGNNCC 3 cut(s) 279, 309, 389
BmrFI CCNGG 4 cut(s) 123, 183, 192, 304
BpiI GAAGAC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 302, 303, 321
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 182
Bse1I ACTGG 1 cut(s) 426
BseBI CCWGG 3 cut(s) 123, 192, 304
BseDI CCNNGG 3 cut(s) 302, 303, 321
BseGI GGATG 2 cut(s) 172, 262
BseLI CCNNNNNNNGG 2 cut(s) 113, 182
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 4 cut(s) 126, 129, 219, 222
Bsh1236I CGCG 1 cut(s) 432
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 113, 182
BsmFI GGGAC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 3 cut(s) 16, 118, 442
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 3 cut(s) 45, 186, 225
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 279, 309, 389
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 3 cut(s) 302, 303, 321
BssMI GATC 3 cut(s) 16, 118, 442
BssNI GRCGYC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 123, 192, 304
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 328
BstF5I GGATG 2 cut(s) 172, 262
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 3 cut(s) 19, 121, 445
BstMBI GATC 3 cut(s) 16, 118, 442
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 123, 192, 304
BstSCI CCNGG 4 cut(s) 121, 181, 190, 302
BstUI CGCG 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 2 cut(s) 149, 245
BtsCI GGATG 2 cut(s) 172, 262
BtsIMutI CAGTG 1 cut(s) 379
BtuMI TCGCGA 1 cut(s) 432
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 188, 388
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 32, 70, 101, 219, 280, 308, 319, 326
CviKI_1 RGCY 8 cut(s) 32, 70, 101, 219, 280, 308, 319, 326
DpnI GATC 3 cut(s) 18, 120, 444
DpnII GATC 3 cut(s) 16, 118, 442
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 188, 388
EcoRII CCWGG 3 cut(s) 121, 190, 302
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 209
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 205
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 159, 249
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 3 cut(s) 294, 312, 384
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 3 cut(s) 25, 369, 399
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 171, 189
Hpy166II GTNNAC 3 cut(s) 197, 299, 439
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 275, 431
Hpy8I GTNNAC 3 cut(s) 197, 299, 439
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 81, 153
HpyCH4IV ACGT 2 cut(s) 289, 408
HpyCH4V TGCA 2 cut(s) 209, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 289, 408
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 3 cut(s) 16, 118, 442
LmnI GCTCC 4 cut(s) 106, 232, 277, 313
MaeI CTAG 3 cut(s) 294, 312, 384
MaeII ACGT 2 cut(s) 289, 408
MalI GATC 3 cut(s) 18, 120, 444
MbiI CCGCTC 1 cut(s) 227
MboI GATC 3 cut(s) 16, 118, 442
MboII GAAGA 2 cut(s) 394, 467
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 2 cut(s) 345, 421
MlyI GAGTC 2 cut(s) 378, 408
MnlI CCTC 7 cut(s) 117, 147, 150, 240, 243, 427, 445
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 4 cut(s) 123, 183, 192, 304
MvaI CCWGG 3 cut(s) 123, 192, 304
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 16, 118, 442
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 279, 309, 389
NruI TCGCGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 303
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 377, 407
PpsI GAGTC 2 cut(s) 377, 407
PsiI TTATAA 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 121, 190, 302
PspGI CCWGG 3 cut(s) 121, 190, 302
PspN4I GGNNCC 3 cut(s) 279, 309, 389
PspPI GGNCC 2 cut(s) 188, 388
PsuI RGATCY 1 cut(s) 118
RruI TCGCGA 1 cut(s) 432
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 16, 118, 442
Sau96I GGNCC 2 cut(s) 188, 388
SchI GAGTC 2 cut(s) 378, 408
ScrFI CCNGG 4 cut(s) 123, 183, 192, 304
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 103, 109, 127, 202, 292, 411, 438
SinI GGWCC 2 cut(s) 188, 388
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 345, 421
SsiI CCGC 3 cut(s) 45, 186, 225
SspMI CTAG 3 cut(s) 294, 312, 384
StyD4I CCNGG 4 cut(s) 121, 181, 190, 302
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 2 cut(s) 292, 411
TaqI TCGA 3 cut(s) 286, 334, 367
TasI AATT 2 cut(s) 345, 421
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 38, 135, 273
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 188, 388
XapI RAATTY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 3 cut(s) 294, 312, 384
ZraI GACGTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.