RLG00000007442

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
16851309 .. 16851742
434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007442

Sequence Viewer

Length: 351 bp
ATGTTCACCGCCAATGGATTAGTTCCAAATCAGCCTTCGTATTATACCAACTATGGCGCTCAAGCTCCACCTCATAATGGAGATCCAGGTTATGCTGCTCCTCCTTCATCTTATGGATACTATAACCCTAACCATCCATCACCGGGCTGTCCCGGCACCTGTTCGACGTTCTATAGTAAACCCAGGGCTCCTAGTAAGCCCAAGGCTTGCACTCGAAACAACATAATTTACAGGGTTCAAGGAAATCGAGCCAGTGGAAACACTAGGGACCATAATGGAGTCTTCAACGTTGGCAACAAAAATTCCAATCGCGAGGTGGACGATCACAATGAGGAAGATGAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

6.4

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 9
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 301
AfiI CCNNNNNNNGG 2 cut(s) 77, 143
AgsI TTSAA 2 cut(s) 239, 286
AjnI CCWGG 2 cut(s) 85, 182
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 301
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 144, 153
AsuHPI GGTGA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 141, 145
BciT130I CCWGG 2 cut(s) 87, 184
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 2 cut(s) 144, 153
BfaI CTAG 2 cut(s) 192, 264
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 60
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 4 cut(s) 87, 144, 153, 184
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 157, 189, 269
BmrFI CCNGG 4 cut(s) 87, 144, 153, 184
BpiI GAAGAC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 144, 153
BsaJI CCNNGG 3 cut(s) 182, 183, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 143
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 87, 184
BseDI CCNNGG 3 cut(s) 182, 183, 201
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 77, 143
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 143, 153
BslFI GGGAC 2 cut(s) 135, 281
BslI CCNNNNNNNGG 2 cut(s) 77, 143
BsmFI GGGAC 2 cut(s) 135, 281
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 82, 322
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 1 cut(s) 9
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 157, 189, 269
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 182, 183, 201
BssMI GATC 2 cut(s) 82, 322
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 87, 184
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 85, 325
BstMBI GATC 2 cut(s) 82, 322
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 87, 184
BstSCI CCNGG 4 cut(s) 85, 142, 151, 182
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 268
CviJI RGCY 7 cut(s) 34, 65, 147, 188, 199, 206, 251
CviKI_1 RGCY 7 cut(s) 34, 65, 147, 188, 199, 206, 251
DpnI GATC 2 cut(s) 84, 324
DpnII GATC 2 cut(s) 82, 322
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 85, 182
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 9 cut(s) 45, 54, 75, 93, 114, 123, 174, 224, 273
FaqI GGGAC 2 cut(s) 135, 281
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 192, 264
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 60
HapII CCGG 2 cut(s) 143, 153
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 279
HpaII CCGG 2 cut(s) 143, 153
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 3 cut(s) 6, 179, 319
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 3 cut(s) 6, 179, 319
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 45, 114
HpyCH4IV ACGT 2 cut(s) 167, 288
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 167, 288
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 82, 322
LmnI GCTCC 3 cut(s) 70, 103, 193
LpnPI CCDG 9 cut(s) 72, 99, 156, 166, 169, 172, 196, 217, 265
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 2 cut(s) 192, 264
MaeII ACGT 2 cut(s) 167, 288
MalI GATC 2 cut(s) 84, 324
MboI GATC 2 cut(s) 82, 322
MboII GAAGA 2 cut(s) 274, 347
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 225, 301
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 4 cut(s) 81, 111, 307, 325
MspI CCGG 2 cut(s) 143, 153
MspR9I CCNGG 4 cut(s) 87, 144, 153, 184
MvaI CCWGG 2 cut(s) 87, 184
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 2 cut(s) 144, 153
NdeII GATC 2 cut(s) 82, 322
NlaIV GGNNCC 3 cut(s) 157, 189, 269
NruI TCGCGA 1 cut(s) 312
PasI CCCWGGG 1 cut(s) 183
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 85, 182
PspGI CCWGG 2 cut(s) 85, 182
PspN4I GGNNCC 3 cut(s) 157, 189, 269
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 82
RruI TCGCGA 1 cut(s) 312
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 82, 322
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 4 cut(s) 87, 144, 153, 184
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 67, 73, 91, 161, 170, 291, 318
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 225, 301
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 192, 264
StyD4I CCNGG 4 cut(s) 85, 142, 151, 182
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 2 cut(s) 170, 291
TaqI TCGA 3 cut(s) 164, 214, 247
TasI AATT 2 cut(s) 225, 301
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 301
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 2 cut(s) 192, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.