Rh7CG198100

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000621
Physical Location & Seq
Forward (+)
17589408 .. 17590386
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG198100.1

Sequence Viewer

Length: 714 bp
ATGAGTACTTTTGAGGAACCGGGGGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTGGGCTCATGTGGGATCGATGACGGAGTTTACTCAACGGCAAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGCTTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTTCCAGTGACAACTTGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCTTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAGTACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGATCCCATTACTACAGACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTTCAGTGCCCACGGCCGACCTCGGCCCATCATCAAGCCCACAGCTAGCGCTGTTAGATCTTCAAACGCATAGCTTGGTTTCAGTTCTGGAACATGTCCTTCATTGTTCATACCTATTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

6.18

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 35 - 126 4.9e-32 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 85, 521
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 537, 576
AfaI GTAC 2 cut(s) 7, 437
AfeI AGCGCT 1 cut(s) 639
AfiI CCNNNNNNNGG 1 cut(s) 54
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 4 cut(s) 180, 244, 281, 653
AluBI AGCT 6 cut(s) 151, 374, 551, 568, 634, 663
AluI AGCT 6 cut(s) 151, 374, 551, 568, 634, 663
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 2 cut(s) 85, 521
AlwNI CAGNNNCTG 1 cut(s) 545
Aor51HI AGCGCT 1 cut(s) 639
AoxI GGCC 3 cut(s) 56, 603, 613
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 2 cut(s) 458, 640
AspS9I GGNCC 3 cut(s) 45, 266, 614
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 157
AsuNHI GCTAGC 1 cut(s) 634
AvaII GGWCC 2 cut(s) 45, 266
BaeGI GKGCMC 2 cut(s) 561, 600
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 560
BccI CCATC 1 cut(s) 625
BceAI ACGGC 2 cut(s) 116, 618
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 2 cut(s) 537, 546
BfoI RGCGCY 2 cut(s) 459, 641
BglII AGATCT 2 cut(s) 257, 646
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 2 cut(s) 45, 266
BmgT120I GGNCC 3 cut(s) 45, 266, 614
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 352
BmtI GCTAGC 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 80
BsaJI CCNNGG 5 cut(s) 20, 48, 519, 600, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 3 cut(s) 68, 305, 454
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 20, 48, 519, 600, 610
BseGI GGATG 2 cut(s) 462, 529
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 3 cut(s) 68, 305, 454
BseSI GKGCMC 2 cut(s) 561, 600
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 1 cut(s) 560
Bsh1285I CGRYCG 2 cut(s) 233, 606
BshFI GGCC 3 cut(s) 58, 605, 615
BshVI ATCGAT 1 cut(s) 80
BsiEI CGRYCG 2 cut(s) 233, 606
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 3 cut(s) 58, 605, 615
Bsp1286I GDGCHC 3 cut(s) 70, 561, 600
Bsp143I GATC 6 cut(s) 77, 230, 257, 397, 526, 646
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 3 cut(s) 58, 605, 615
BspCNI CTCAG 1 cut(s) 236
BspDI ATCGAT 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 85, 521
BsrI ACTGG 3 cut(s) 68, 305, 454
BssECI CCNNGG 5 cut(s) 20, 48, 519, 600, 610
BssMI GATC 6 cut(s) 77, 230, 257, 397, 526, 646
BssT1I CCWWGG 2 cut(s) 48, 519
Bst4CI ACNGT 4 cut(s) 220, 435, 440, 494
BstC8I GCNNGC 2 cut(s) 472, 636
BstDEI CTNAG 1 cut(s) 223
BstDSI CCRYGG 2 cut(s) 48, 600
BstF5I GGATG 2 cut(s) 462, 529
BstH2I RGCGCY 2 cut(s) 459, 641
BstHHI GCGC 2 cut(s) 458, 640
BstKTI GATC 6 cut(s) 80, 233, 260, 400, 529, 649
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 6 cut(s) 77, 230, 257, 397, 526, 646
BstMCI CGRYCG 2 cut(s) 233, 606
BstMWI GCNNNNNNNGC 4 cut(s) 109, 371, 565, 574
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 537, 546
BstSLI GKGCMC 2 cut(s) 561, 600
BstV1I GCAGC 1 cut(s) 560
BstX2I RGATCY 2 cut(s) 257, 646
BstYI RGATCY 2 cut(s) 257, 646
BstZI CGGCCG 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 3 cut(s) 58, 605, 615
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 2 cut(s) 48, 600
BtsCI GGATG 2 cut(s) 462, 529
BtsIMutI CAGTG 3 cut(s) 312, 561, 600
Cac8I GCNNGC 2 cut(s) 472, 636
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 2 cut(s) 458, 640
Cfr13I GGNCC 3 cut(s) 45, 266, 614
ClaI ATCGAT 1 cut(s) 80
Csp6I GTAC 2 cut(s) 6, 436
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 6 cut(s) 49, 71, 113, 185, 338, 683
CviQI GTAC 2 cut(s) 6, 436
DdeI CTNAG 1 cut(s) 223
DpnI GATC 6 cut(s) 79, 232, 259, 399, 528, 648
DpnII GATC 6 cut(s) 77, 230, 257, 397, 526, 646
EaeI YGGCCR 1 cut(s) 603
EagI CGGCCG 1 cut(s) 603
EclXI CGGCCG 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 48, 519
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 45, 266
Eco47III AGCGCT 1 cut(s) 639
Eco52I CGGCCG 1 cut(s) 603
Eco57I CTGAAG 2 cut(s) 537, 576
EcoT14I CCWWGG 2 cut(s) 48, 519
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 48, 519
FaeI CATG 6 cut(s) 52, 74, 116, 188, 341, 686
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 48, 70, 112, 184, 337, 682
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 2 cut(s) 449, 536
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 1 cut(s) 635
GlaI GCGC 2 cut(s) 457, 639
GluI GCNGC 1 cut(s) 549
HaeII RGCGCY 2 cut(s) 459, 641
HaeIII GGCC 3 cut(s) 58, 605, 615
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 458, 640
Hin1II CATG 6 cut(s) 52, 74, 116, 188, 341, 686
Hin6I GCGC 2 cut(s) 456, 638
HinP1I GCGC 2 cut(s) 456, 638
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 230, 393
Hpy188III TCNNGA 4 cut(s) 161, 244, 359, 677
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 4 cut(s) 220, 435, 440, 494
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 365, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 371, 565, 574
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 6 cut(s) 52, 74, 116, 188, 341, 686
HspAI GCGC 2 cut(s) 456, 638
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 77, 230, 257, 397, 526, 646
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 307, 317
MalI GATC 6 cut(s) 79, 232, 259, 399, 528, 648
MboI GATC 6 cut(s) 77, 230, 257, 397, 526, 646
MboII GAAGA 3 cut(s) 38, 582, 641
MflI RGATCY 2 cut(s) 257, 646
MhlI GDGCHC 3 cut(s) 70, 561, 600
MluCI AATT 5 cut(s) 167, 180, 276, 324, 586
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 7 cut(s) 7, 48, 119, 157, 336, 389, 620
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 109, 371, 565, 574
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 48
NdeII GATC 6 cut(s) 77, 230, 257, 397, 526, 646
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 6 cut(s) 52, 74, 116, 188, 341, 686
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 686
PciI ACATGT 1 cut(s) 682
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 1 cut(s) 550
Ple19I CGATCG 1 cut(s) 233
PscI ACATGT 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 45, 266, 614
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 2 cut(s) 257, 646
PvuI CGATCG 1 cut(s) 233
RsaI GTAC 2 cut(s) 7, 437
RsaNI GTAC 2 cut(s) 6, 436
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 6 cut(s) 77, 230, 257, 397, 526, 646
Sau96I GGNCC 3 cut(s) 45, 266, 614
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 3 cut(s) 70, 561, 600
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 2 cut(s) 537, 546
SinI GGWCC 2 cut(s) 45, 266
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 5 cut(s) 167, 180, 276, 324, 586
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 2 cut(s) 48, 519
TaaI ACNGT 4 cut(s) 220, 435, 440, 494
TaiI ACGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 80
TasI AATT 5 cut(s) 167, 180, 276, 324, 586
TatI WGTACW 2 cut(s) 5, 435
TfiI GAWTC 1 cut(s) 388
TscAI CASTG 3 cut(s) 312, 561, 600
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 173, 326, 680, 687
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 312, 561, 600
VpaK11BI GGWCC 2 cut(s) 45, 266
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 686
XspI CTAG 1 cut(s) 635
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.