Rorug04G0138700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000621
Physical Location & Seq
Forward (+)
22669009 .. 22669290
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0138700.1

Sequence Viewer

Length: 282 bp
ATGGTTCTGGCATGCCTTGCAGTTTGGTATAATCCACAAGAACCAATGTTTTCTCATAACACCAATGACCTTATACAAAAAATAACTGAAAATGTAACAGAGAAAGTGAAAGAGTCTTGCGCAAAAAAGATGCAGGCCCAGCTTGATATGCTTCAAGCTCAGATTAACTGTTTGGAGAGTAAAGCACAAATTCATATGCACAGGTTGGTACACAAATCCATAATAGTAGTTTCCACATTTGACCATTTTTATCTTCGACAAATTTGTTTGTTCTGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

93

Amino Acids

10.84

Weight (kDa)

7.68

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 121
AcsI RAATTY 2 cut(s) 189, 261
AfaI GTAC 2 cut(s) 210, 277
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 2 cut(s) 142, 158
AluI AGCT 2 cut(s) 142, 158
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 189, 261
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 279
BseMII CTCAG 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 138
BshFI GGCC 1 cut(s) 137
BsnI GGCC 1 cut(s) 137
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 13, 135
BstDEI CTNAG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 122
BstMWI GCNNNNNNNGC 3 cut(s) 17, 139, 148
BstNSI RCATGY 1 cut(s) 15
BstSNI TACGTA 1 cut(s) 279
BsuRI GGCC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 13, 135
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 209, 276
CviAII CATG 1 cut(s) 12
CviJI RGCY 3 cut(s) 137, 142, 158
CviKI_1 RGCY 3 cut(s) 137, 142, 158
CviQI GTAC 2 cut(s) 209, 276
DdeI CTNAG 1 cut(s) 159
Eco105I TACGTA 1 cut(s) 279
FaeI CATG 1 cut(s) 15
FaiI YATR 8 cut(s) 13, 30, 57, 74, 149, 195, 197, 221
FatI CATG 1 cut(s) 11
FauNDI CATATG 1 cut(s) 195
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 1 cut(s) 121
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 137
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 20, 133, 199
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 139, 148
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 120
LpnPI CCDG 3 cut(s) 119, 152, 187
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 1 cut(s) 245
MluCI AATT 2 cut(s) 189, 261
MlyI GAGTC 1 cut(s) 122
MseI TTAA 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 17, 139, 148
NdeI CATATG 1 cut(s) 195
NlaIII CATG 1 cut(s) 15
NsbI TGCGCA 1 cut(s) 121
NspI RCATGY 1 cut(s) 15
PaeI GCATGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 136
RsaI GTAC 2 cut(s) 210, 277
RsaNI GTAC 2 cut(s) 209, 276
SaqAI TTAA 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 122
SetI ASST 5 cut(s) 72, 144, 160, 206, 281
SfaNI GCATC 1 cut(s) 120
SnaBI TACGTA 1 cut(s) 279
SphI GCATGC 1 cut(s) 15
Sse9I AATT 2 cut(s) 189, 261
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 189, 261
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 182
XapI RAATTY 2 cut(s) 189, 261
XceI RCATGY 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.