RLG00000007435

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
16747987 .. 16748430
444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007435

Sequence Viewer

Length: 444 bp
ATGTCACAGTATCCCCAGATGATGAACCCAGGCGCCATGTTCGCCAGTGGTTCTGATCAGAATAAGCCTTCATATAATCCCAACTTTGGGGCTCCTGCACCATTTGCTCATAATGGATATCCAAGTTACAACAATTATGCACATCCTCCTCAACCTCATGGTTACTATAACAACCAATACCCATCACAGTCAGCTTCTGATTCTGCTGCTCATACTCCCTTTGGTGGATATAGCAACCATCTTGCTCCTCCACCTTCTTACTACGATCCAGTCTCACAGACGCCTGTTGCGCCTCAGTATCCTAGTAAGCCCAAGAGTAGTAAAGGTAGCAAAAGAACATCTTACAATGTTTCTGGGAATCGAGTCAGCGGAAACAAAGGAGACCATAATGGAGTTTTCAACATTGGCAACAAGAATACTCGTTACAACGATGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

148

Amino Acids

16.03

Weight (kDa)

8.71

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 369
AclWI GGATC 1 cut(s) 260
AcyI GRCGYC 2 cut(s) 33, 281
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 224
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 2 cut(s) 277, 375
AlwI GGATC 1 cut(s) 260
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 35, 292
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 190, 246
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 2 cut(s) 21, 309
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 277, 375
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 36
BfuI GTATCC 2 cut(s) 21, 309
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 2 cut(s) 34, 93
BmrFI CCNGG 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 33, 281
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 224
Bse1I ACTGG 2 cut(s) 45, 269
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 224
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 45, 269
BseRI GAGGAG 2 cut(s) 138, 237
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 224
BsmAI GTCTC 2 cut(s) 277, 375
Bso31I GGTCTC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 55, 265
BspACI CCGC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 34, 93
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 45, 269
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 55, 265
BssNI GRCGYC 2 cut(s) 33, 281
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 9, 189
BstACI GRCGYC 2 cut(s) 33, 281
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 292
BstKTI GATC 2 cut(s) 58, 268
BstMAI GTCTC 2 cut(s) 277, 375
BstMBI GATC 2 cut(s) 55, 265
BstMWI GCNNNNNNNGC 3 cut(s) 41, 104, 289
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 193
BsuI GTATCC 2 cut(s) 21, 309
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 2 cut(s) 35, 292
CseI GACGC 1 cut(s) 289
CviAII CATG 2 cut(s) 37, 158
CviJI RGCY 4 cut(s) 67, 92, 194, 310
CviKI_1 RGCY 4 cut(s) 67, 92, 194, 310
DdeI CTNAG 1 cut(s) 294
DinI GGCGCC 1 cut(s) 34
DpnI GATC 2 cut(s) 57, 267
DpnII GATC 2 cut(s) 55, 265
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 375
Eco32I GATATC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
FaeI CATG 2 cut(s) 40, 161
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 2 cut(s) 36, 157
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 34, 291
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 36
HgaI GACGC 1 cut(s) 289
HhaI GCGC 2 cut(s) 35, 292
Hin1I GRCGYC 2 cut(s) 33, 281
Hin1II CATG 2 cut(s) 40, 161
Hin6I GCGC 2 cut(s) 33, 290
HinP1I GCGC 2 cut(s) 33, 290
HinfI GANTC 3 cut(s) 200, 358, 363
Hpy188I TCNGA 3 cut(s) 55, 60, 199
HpyAV CCTTC 2 cut(s) 78, 264
HpyCH4III ACNGT 2 cut(s) 9, 189
HpyCH4V TGCA 2 cut(s) 98, 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 104, 289
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 33, 281
Hsp92II CATG 2 cut(s) 40, 161
HspAI GCGC 2 cut(s) 33, 290
KasI GGCGCC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 55, 265
LmnI GCTCC 2 cut(s) 97, 250
LpnPI CCDG 8 cut(s) 15, 29, 42, 58, 108, 282, 297, 339
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 4 cut(s) 3, 125, 161, 422
MalI GATC 2 cut(s) 57, 267
MboI GATC 2 cut(s) 55, 265
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 133
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 5 cut(s) 156, 159, 165, 258, 303
MspA1I CMGCKG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 41, 104, 289
NarI GGCGCC 1 cut(s) 33
NdeII GATC 2 cut(s) 55, 265
NlaIII CATG 2 cut(s) 40, 161
NlaIV GGNNCC 2 cut(s) 34, 93
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 2 cut(s) 200, 358
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 371
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 34, 93
PstNI CAGNNNCTG 1 cut(s) 197
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 55, 265
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 157, 196, 256, 328
SfoI GGCGCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 369
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 9, 189
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 133
TfiI GAWTC 2 cut(s) 200, 358
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 38, 60
TspRI CASTG 1 cut(s) 52
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.