Prupe.1G121700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000621
Physical Location & Seq
Forward (+)
9558832 .. 9559503
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G121700.1

Sequence Viewer

Length: 477 bp
ATGTCGGACTTTGCTGCTGTTAATGGTTATTCAGGTTATAATTATGGTCCTCCTCCAGTCCCTAATTATAATCCTGGATACTATAATAATAGCTATCCATTATTAGTACAGTCTGCTCCACCTGCTCATGCTCCATATCAACTGCATGGATACCCTAATAATAACTATTATGCTCCTCAGCCTCAGCCTCAGCCTCAGCCTCCATCTAATTATGGATACTATTCAGCACCGCAGCCTCAGCCTCAGCCTCCATCTTATGGATACCATCCAGCACCTCAGCCTCCATCCCCTGTTGCTCGACGTCCCAAGGCCAAGAATGGAAGAACTGGCGGCAAACCAAGCAGCAGTGAAGTTTACACCATCTCTAGGAATCGAATCAGTGGAAACAAAGGGGACCATCATGGAATTTTCAATGTTGGCAACAAGCATGGTCGTCGTGACATTGATGAAGAAGAAGAAGAACAGGAAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.51

Weight (kDa)

7.02

Isoelectric Point (pI)

83.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 69
AarI CACCTGC 1 cut(s) 130
AatII GACGTC 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 2 cut(s) 230, 330
AcsI RAATTY 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 257, 366
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 14, 232, 342
ApoI RAATTY 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 47, 394
AvaII GGWCC 2 cut(s) 47, 394
BbvCI CCTCAGC 7 cut(s) 177, 183, 189, 195, 237, 243, 276
BbvI GCAGC 2 cut(s) 244, 354
BccI CCATC 6 cut(s) 211, 259, 273, 292, 368, 405
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 4 cut(s) 71, 143, 209, 254
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 4 cut(s) 71, 143, 209, 254
BisI GCNGC 4 cut(s) 15, 233, 331, 343
BlsI GCNGC 4 cut(s) 16, 234, 332, 344
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 2 cut(s) 47, 394
BmgT120I GGNCC 2 cut(s) 47, 394
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 7 cut(s) 177, 183, 189, 195, 237, 243, 276
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 366
Bse1I ACTGG 2 cut(s) 56, 331
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 265, 284
BseLI CCNNNNNNNGG 2 cut(s) 257, 366
BseMII CTCAG 7 cut(s) 191, 197, 203, 209, 251, 257, 290
BseNI ACTGG 2 cut(s) 56, 331
BseRI GAGGAG 2 cut(s) 42, 165
BseXI GCAGC 2 cut(s) 244, 354
BshFI GGCC 1 cut(s) 311
BslFI GGGAC 3 cut(s) 44, 288, 407
BslI CCNNNNNNNGG 2 cut(s) 257, 366
BsmFI GGGAC 3 cut(s) 44, 288, 407
BsnI GGCC 1 cut(s) 311
BspACI CCGC 2 cut(s) 230, 330
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 7 cut(s) 190, 196, 202, 208, 250, 256, 289
BspLI GGNNCC 1 cut(s) 395
BspMI ACCTGC 1 cut(s) 130
BsrI ACTGG 2 cut(s) 56, 331
BssECI CCNNGG 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 301
BstDEI CTNAG 7 cut(s) 177, 183, 189, 195, 237, 243, 276
BstF5I GGATG 2 cut(s) 265, 284
BstMWI GCNNNNNNNGC 3 cut(s) 122, 238, 339
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 244, 354
BsuI GTATCC 4 cut(s) 71, 143, 209, 254
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 265, 284
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 352, 385
BveI ACCTGC 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 47, 394
Csp6I GTAC 1 cut(s) 107
CviAII CATG 4 cut(s) 128, 146, 401, 428
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 7 cut(s) 177, 183, 189, 195, 237, 243, 276
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 47, 394
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 131, 149, 404, 431
FaqI GGGAC 3 cut(s) 44, 288, 407
FatI CATG 4 cut(s) 127, 145, 400, 427
Fnu4HI GCNGC 4 cut(s) 15, 233, 331, 343
FokI GGATG 2 cut(s) 252, 271
Fsp4HI GCNGC 4 cut(s) 15, 233, 331, 343
FspBI CTAG 1 cut(s) 366
GluI GCNGC 4 cut(s) 15, 233, 331, 343
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 131, 149, 404, 431
HinfI GANTC 2 cut(s) 370, 375
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 2 cut(s) 303, 438
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 238, 339
HpyF3I CTNAG 7 cut(s) 177, 183, 189, 195, 237, 243, 276
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 131, 149, 404, 431
LmnI GCTCC 3 cut(s) 121, 136, 178
LpnPI CCDG 9 cut(s) 18, 60, 69, 87, 135, 282, 303, 312, 449
Lsp1109I GCAGC 2 cut(s) 244, 354
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 437
MboII GAAGA 5 cut(s) 333, 461, 464, 467, 470
MluCI AATT 5 cut(s) 40, 64, 208, 405, 472
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 122, 238, 339
NlaIII CATG 4 cut(s) 131, 149, 404, 431
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 437
PaqCI CACCTGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 370, 375
PflMI CCANNNNNTGG 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 4 cut(s) 16, 234, 332, 344
PsiI TTATAA 2 cut(s) 39, 69
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 2 cut(s) 47, 394
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 4 cut(s) 15, 233, 331, 343
Sau96I GGNCC 2 cut(s) 47, 394
ScrFI CCNGG 1 cut(s) 75
SetI ASST 5 cut(s) 37, 95, 124, 277, 304
SinI GGWCC 2 cut(s) 47, 394
Sse9I AATT 5 cut(s) 40, 64, 208, 405, 472
SsiI CCGC 2 cut(s) 230, 330
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 298, 373
TasI AATT 5 cut(s) 40, 64, 208, 405, 472
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 370, 375
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 352, 385
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 3 cut(s) 14, 232, 342
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 462
TspRI CASTG 2 cut(s) 352, 385
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 47, 394
XapI RAATTY 1 cut(s) 405
XspI CTAG 1 cut(s) 366
ZraI GACGTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.