RLG00000007388

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
16409363 .. 16411085
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007388

Sequence Viewer

Length: 954 bp
ATGGAACCAGAGAAAAAACCGTTGAAGGTTGGACCGTTTGGTTCAGATAGTGGAGGAGATCGTTTTGATGACGGAGCTCACTCAACGGTGAGGCAAGTGGTGATCTGTTCTAGTCTATCGTCAATTCTATACATCCAGATTGAATATGATGACAACGGAAAATCATATTGGTCACAGAAGCATGGTTGTAGTAATCCTATCGGTGTGGACAAAACAGAGATGATCAAGCTTGATTATCCAGATGAATATCTGACTTCAATTCACGGATATTACACAGATAGTTGGTGCTTCCCTACCTACATTACGTCACTCACTTTCACTAGCAACAGAAAAGTGTACGGACCATATGGAAATTATGAAAACGAGGGAAGAAAATATTTCACAATCCAAGTCTCTGGAAGTAAGATCATTGGGTTCTATGGCAGGTCTGATGAGTGGTTTGATCTTCGTGCATTAGGAGCTTACCTTATGCCTTTGGTTCATACACAACAATACTCCAACAATATTAGTTCTGCACCAGTTGCTCATATTGGTTATCCGGCTGCGTATAATTATACGCCGCCTCTTCCTCGTCCTCCTCCATATTATGGAAATTACTATAATAATCCTAACCAGCCACCACAGGCTGCTCCACCTGTTCCGACTCCATATCCATATGGTAACTATTACGTTCCTCCTCCCGGTCCTCCTCCGCCATATAATAATGGATACTATGACTATCAGATGTCACAGGCACCACCGCCGCGGCCGCCTGCTGCTCTTGGACGTCCTAGTAAGCCGAAAAGTGCTCCCAGTAAGCCCAAGGCTGCTAAAAATAATGGCCCTAAAAACGTGTCTTACAGGGTTTTAGGGAATGAAGTCAGTGAAAACACAGGAGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATACTGGTCGCCACGTGGAAGATGATGATGAAGACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

318

Amino Acids

35.35

Weight (kDa)

5.99

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 10 - 155 4.7e-34 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 769
Acc36I ACCTGC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 733
AccB7I CCANNNNNTGG 1 cut(s) 587
AccII CGCG 1 cut(s) 745
AciI CCGC 6 cut(s) 560, 692, 740, 743, 745, 749
AclI AACGTT 1 cut(s) 897
AcoI YGGCCR 1 cut(s) 746
AcvI CACGTG 1 cut(s) 925
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 587, 680
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 4 cut(s) 25, 143, 258, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 3 cut(s) 77, 229, 461
AluI AGCT 3 cut(s) 77, 229, 461
Alw21I GWGCWC 2 cut(s) 79, 790
Alw26I GTCTC 2 cut(s) 397, 870
AoxI GGCC 2 cut(s) 746, 820
ApeKI GCWGC 4 cut(s) 542, 626, 755, 806
AspS9I GGNCC 4 cut(s) 32, 341, 683, 821
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 2 cut(s) 100, 112
AvaII GGWCC 3 cut(s) 32, 341, 683
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 79
BbrPI CACGTG 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 79, 790
BbvI GCAGC 4 cut(s) 529, 613, 742, 793
BciVI GTATCC 1 cut(s) 701
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 397, 870
BfaI CTAG 3 cut(s) 111, 321, 771
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 8 cut(s) 543, 560, 627, 743, 746, 749, 756, 807
BlsI GCNGC 8 cut(s) 544, 561, 628, 744, 747, 750, 757, 808
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 3 cut(s) 32, 341, 683
BmgT120I GGNCC 4 cut(s) 32, 341, 683, 821
BmiI GGNNCC 2 cut(s) 6, 735
BmrFI CCNGG 1 cut(s) 681
BmrI ACTGGG 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 948
BpuMI CCSGG 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 766
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 743, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 680
Bse1I ACTGG 3 cut(s) 518, 792, 919
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 743, 801
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 587, 680
BseNI ACTGG 3 cut(s) 518, 792, 919
BseRI GAGGAG 4 cut(s) 69, 567, 666, 678
BseX3I CGGCCG 1 cut(s) 746
BseXI GCAGC 4 cut(s) 529, 613, 742, 793
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 749
BshFI GGCC 2 cut(s) 748, 822
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 1 cut(s) 749
BsiHKAI GWGCWC 2 cut(s) 79, 790
BsiSI CCGG 2 cut(s) 539, 681
BslI CCNNNNNNNGG 2 cut(s) 587, 680
BsmAI GTCTC 2 cut(s) 397, 870
BsnI GGCC 2 cut(s) 748, 822
Bso31I GGTCTC 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 79, 790
Bsp143I GATC 5 cut(s) 58, 102, 222, 405, 442
BspACI CCGC 6 cut(s) 560, 692, 740, 743, 745, 749
BspANI GGCC 2 cut(s) 748, 822
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 6, 735
BspMI ACCTGC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 870
BsrI ACTGG 3 cut(s) 518, 792, 919
BssECI CCNNGG 2 cut(s) 743, 801
BssMI GATC 5 cut(s) 58, 102, 222, 405, 442
BssNI GRCGYC 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 21, 36, 88
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 766
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 1 cut(s) 753
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 745
BstKTI GATC 5 cut(s) 61, 105, 225, 408, 445
BstMAI GTCTC 2 cut(s) 397, 870
BstMBI GATC 5 cut(s) 58, 102, 222, 405, 442
BstMCI CGRYCG 1 cut(s) 749
BstMWI GCNNNNNNNGC 3 cut(s) 458, 521, 748
BstSCI CCNGG 1 cut(s) 679
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 529, 613, 742, 793
BstV2I GAAGAC 1 cut(s) 948
BstXI CCANNNNNNTGG 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 746
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 2 cut(s) 748, 822
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 868
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 753
CciNI GCGGCCGC 1 cut(s) 746
Cfr13I GGNCC 4 cut(s) 32, 341, 683, 821
Cfr42I CCGCGG 1 cut(s) 746
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 182
CviQI GTAC 1 cut(s) 337
DpnI GATC 5 cut(s) 60, 104, 224, 407, 444
DpnII GATC 5 cut(s) 58, 102, 222, 405, 442
EaeI YGGCCR 1 cut(s) 746
EagI CGGCCG 1 cut(s) 746
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 681
Ecl136II GAGCTC 1 cut(s) 77
EclXI CGGCCG 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 870
Eco47I GGWCC 3 cut(s) 32, 341, 683
Eco52I CGGCCG 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 925
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 1 cut(s) 185
FatI CATG 1 cut(s) 181
FauNDI CATATG 2 cut(s) 346, 655
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 8 cut(s) 543, 560, 627, 743, 746, 749, 756, 807
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 8 cut(s) 543, 560, 627, 743, 746, 749, 756, 807
FspBI CTAG 3 cut(s) 111, 321, 771
GluI GCNGC 8 cut(s) 543, 560, 627, 743, 746, 749, 756, 807
HaeIII GGCC 2 cut(s) 748, 822
HapII CCGG 2 cut(s) 539, 681
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 643
HpaII CCGG 2 cut(s) 539, 681
HphI GGTGA 2 cut(s) 100, 112
Hpy166II GTNNAC 2 cut(s) 208, 337
Hpy188I TCNGA 5 cut(s) 46, 252, 430, 642, 723
Hpy188III TCNNGA 3 cut(s) 136, 239, 396
Hpy8I GTNNAC 2 cut(s) 208, 337
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 21, 36, 88
HpyCH4IV ACGT 6 cut(s) 305, 669, 766, 831, 897, 924
HpyCH4V TGCA 2 cut(s) 452, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 521, 748
HpySE526I ACGT 6 cut(s) 305, 669, 766, 831, 897, 924
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 222
KspI CCGCGG 1 cut(s) 746
Kzo9I GATC 5 cut(s) 58, 102, 222, 405, 442
LmnI GCTCC 4 cut(s) 74, 458, 634, 793
Lsp1109I GCAGC 4 cut(s) 529, 613, 742, 793
MaeI CTAG 3 cut(s) 111, 321, 771
MaeII ACGT 6 cut(s) 305, 669, 766, 831, 897, 924
MaeIII GTNAC 4 cut(s) 171, 306, 659, 726
MalI GATC 5 cut(s) 60, 104, 224, 407, 444
MboI GATC 5 cut(s) 58, 102, 222, 405, 442
MboII GAAGA 5 cut(s) 381, 437, 557, 941, 953
MhlI GDGCHC 2 cut(s) 79, 790
MluCI AATT 5 cut(s) 123, 258, 352, 550, 592
MlyI GAGTC 1 cut(s) 637
MmeI TCCRAC 3 cut(s) 10, 522, 665
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 2 cut(s) 539, 681
MspR9I CCNGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 458, 521, 748
NciI CCSGG 1 cut(s) 681
NdeI CATATG 2 cut(s) 346, 655
NdeII GATC 5 cut(s) 58, 102, 222, 405, 442
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 6, 735
NmuCI GTSAC 3 cut(s) 171, 306, 726
NotI GCGGCCGC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 8 cut(s) 544, 561, 628, 744, 747, 750, 757, 808
PleI GAGTC 1 cut(s) 637
PmaCI CACGTG 1 cut(s) 925
PmlI CACGTG 1 cut(s) 925
PpsI GAGTC 1 cut(s) 637
Ppu21I YACGTR 1 cut(s) 925
Psp124BI GAGCTC 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 897
PspCI CACGTG 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 6, 735
PspPI GGNCC 4 cut(s) 32, 341, 683, 821
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SacI GAGCTC 1 cut(s) 79
SacII CCGCGG 1 cut(s) 746
SatI GCNGC 8 cut(s) 543, 560, 627, 743, 746, 749, 756, 807
Sau3AI GATC 5 cut(s) 58, 102, 222, 405, 442
Sau96I GGNCC 4 cut(s) 32, 341, 683, 821
SchI GAGTC 1 cut(s) 637
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 2 cut(s) 79, 790
Sfr303I CCGCGG 1 cut(s) 746
SgrBI CCGCGG 1 cut(s) 746
SinI GGWCC 3 cut(s) 32, 341, 683
Sse9I AATT 5 cut(s) 123, 258, 352, 550, 592
SsiI CCGC 6 cut(s) 560, 692, 740, 743, 745, 749
SspI AATATT 2 cut(s) 377, 505
SspMI CTAG 3 cut(s) 111, 321, 771
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 679
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 3 cut(s) 21, 36, 88
TaiI ACGT 6 cut(s) 308, 672, 769, 834, 900, 927
TasI AATT 5 cut(s) 123, 258, 352, 550, 592
TauI GCSGC 4 cut(s) 562, 745, 748, 751
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 3 cut(s) 171, 306, 726
TseI GCWGC 4 cut(s) 542, 626, 755, 806
Tsp45I GTSAC 3 cut(s) 171, 306, 726
TspDTI ATGAA 5 cut(s) 258, 372, 470, 870, 954
TspGWI ACGGA 4 cut(s) 87, 171, 279, 354
TspRI CASTG 1 cut(s) 868
Van91I CCANNNNNTGG 1 cut(s) 587
VpaK11BI GGWCC 3 cut(s) 32, 341, 683
XspI CTAG 3 cut(s) 111, 321, 771
ZraI GACGTC 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.