FvH4_4g19540

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000621
Physical Location & Seq
Reverse (-)
23179235 .. 23181028
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19540.t2

Sequence Viewer

Length: 951 bp
ATGGAAGCAGAGAAGAAACCGTTGAAGGTTGGGCCGTTTGGTTCAGACAGTGGAGGAGATCGTTTTGATGATGGAGTTCACTCCTCTGTGAGGCAACTAGTGATATGTTATAGTCCATCGTCAATTCGCTACATCCAGATTGAATATGATGACAACGGAAAATCATATTGGTCGCAGAAGCACGGTTATAGCAGCTCCCTGAGTCTTGACAAAATAGAGTCGATCAAGCTTGATTATCCAGAAGAATATTTGACTTCAATTCACGGATATTACAAAAGTACTTGGTACTTACCTACCTACATTAGCTCACTCACTTTCACTAGCAACAGAAAAGTGTACGGACCATTTGGAGATTATGAAAATGAGGGAAGAAAATACTTCACAATCCAAGTCTCTGGAAGTAAGATCGTTGGGTTCCATGGCAAGTCAGATGAGTGGTTTGATCTTCGTGCATTAGGAGCTTACCTTAAGCCTCTGGTTCATACACCACAATATTCCAACAATAATATTAGTCTTGCACCAGTTGCTCATATTGGTTATCCAGCTGCGCATGATTATACGCCGCCTCTTCAGGCTCGTCCTCCTCCTCCATATTATGGTAGTTACTATACTAACCCTAACCACCCACCACAGGCTGCTCCGACTCCATATCCATATGGCTATTATGTTCCTCCTCCAGGTCCTCCTCCATATAATAATGGATACTATGACTATCAAATGTCACAGGCACCACCGCTGCCGCAGCCTGCTGCTCTTGGACGTCCTCGTAAGCCGAAAAGTGCTCCTGGTAAGCCCAAGGCTGCTAAAAATAATGACCCTAAAAACGTATCTTATAGGGTTTTGGGGAATGAAGTCAGTGGAAACACAGGAGATCATAATGGAGTTTTCAGCGTTGGCAACAAGAATACTGGTCTCCACAAGGAAGATGATGAAGAAGACGAAGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

6.55

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 83 1.1e-18 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 763
Acc16I TGCGCA 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 596
AciI CCGC 3 cut(s) 563, 734, 740
AcuI CTGAAG 1 cut(s) 554
AcyI GRCGYC 1 cut(s) 760
AfaI GTAC 3 cut(s) 280, 287, 338
AfiI CCNNNNNNNGG 4 cut(s) 90, 596, 631, 677
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 3 cut(s) 25, 143, 258
AhlI ACTAGT 1 cut(s) 97
AjnI CCWGG 2 cut(s) 676, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 5 cut(s) 195, 229, 306, 461, 545
AluI AGCT 5 cut(s) 195, 229, 306, 461, 545
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 2 cut(s) 397, 917
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 7 cut(s) 192, 545, 635, 736, 742, 749, 800
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 3 cut(s) 32, 341, 680
AvaII GGWCC 2 cut(s) 341, 680
BanI GGYRCC 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 942
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 7 cut(s) 204, 532, 622, 723, 736, 754, 787
BccI CCATC 2 cut(s) 65, 124
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 2 cut(s) 678, 786
BciVI GTATCC 1 cut(s) 695
BcoDI GTCTC 2 cut(s) 397, 917
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 2 cut(s) 98, 321
BfrI CTTAAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 9 cut(s) 193, 546, 563, 636, 737, 740, 743, 750, 801
BlsI GCNGC 9 cut(s) 194, 547, 564, 637, 738, 741, 744, 751, 802
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 678, 786
Bme18I GGWCC 2 cut(s) 341, 680
BmgT120I GGNCC 3 cut(s) 32, 341, 680
BmiI GGNNCC 2 cut(s) 416, 729
BmrFI CCNGG 2 cut(s) 678, 786
BpiI GAAGAC 1 cut(s) 942
BpmI CTGGAG 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 760
BsaI GGTCTC 1 cut(s) 917
BsaJI CCNNGG 2 cut(s) 418, 795
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 596, 631, 677
Bse1I ACTGG 2 cut(s) 521, 913
BseBI CCWGG 2 cut(s) 678, 786
BseDI CCNNGG 2 cut(s) 418, 795
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 4 cut(s) 90, 596, 631, 677
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 521, 913
BseRI GAGGAG 6 cut(s) 69, 73, 573, 576, 663, 675
BseXI GCAGC 7 cut(s) 204, 532, 622, 723, 736, 754, 787
BshFI GGCC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 727
BsiHKAI GWGCWC 1 cut(s) 784
BslI CCNNNNNNNGG 4 cut(s) 90, 596, 631, 677
BsmAI GTCTC 2 cut(s) 397, 917
BsnI GGCC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 917
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 5 cut(s) 58, 222, 405, 442, 871
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 3 cut(s) 563, 734, 740
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 416, 729
BspT107I GGYRCC 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 917
BsrI ACTGG 2 cut(s) 521, 913
BssECI CCNNGG 2 cut(s) 418, 795
BssMI GATC 5 cut(s) 58, 222, 405, 442, 871
BssNI GRCGYC 1 cut(s) 760
BssT1I CCWWGG 2 cut(s) 418, 795
Bst2UI CCWGG 2 cut(s) 678, 786
Bst4CI ACNGT 3 cut(s) 21, 50, 185
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 760
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 418
BstENI CCTNNNNNAGG 2 cut(s) 88, 675
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 5 cut(s) 61, 225, 408, 445, 874
BstMAI GTCTC 2 cut(s) 397, 917
BstMBI GATC 5 cut(s) 58, 222, 405, 442, 871
BstMWI GCNNNNNNNGC 3 cut(s) 458, 524, 742
BstNI CCWGG 2 cut(s) 678, 786
BstSCI CCNGG 2 cut(s) 676, 784
BstV1I GCAGC 7 cut(s) 204, 532, 622, 723, 736, 754, 787
BstV2I GAAGAC 1 cut(s) 942
BstXI CCANNNNNNTGG 1 cut(s) 395
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 55, 862
Cac8I GCNNGC 1 cut(s) 747
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 3 cut(s) 32, 341, 680
Csp6I GTAC 3 cut(s) 279, 286, 337
CviAII CATG 2 cut(s) 419, 551
CviQI GTAC 3 cut(s) 279, 286, 337
DdeI CTNAG 1 cut(s) 200
DpnI GATC 5 cut(s) 60, 224, 407, 444, 873
DpnII GATC 5 cut(s) 58, 222, 405, 442, 871
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 418, 795
Eco31I GGTCTC 1 cut(s) 917
Eco47I GGWCC 2 cut(s) 341, 680
Eco57I CTGAAG 1 cut(s) 554
EcoNI CCTNNNNNAGG 2 cut(s) 88, 675
EcoO109I RGGNCCY 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 676, 784
EcoT14I CCWWGG 2 cut(s) 418, 795
ErhI CCWWGG 2 cut(s) 418, 795
FaeI CATG 2 cut(s) 422, 554
FatI CATG 2 cut(s) 418, 550
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 9 cut(s) 193, 546, 563, 636, 737, 740, 743, 750, 801
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 9 cut(s) 193, 546, 563, 636, 737, 740, 743, 750, 801
FspBI CTAG 2 cut(s) 98, 321
FspI TGCGCA 1 cut(s) 549
GlaI GCGC 1 cut(s) 549
GluI GCNGC 9 cut(s) 193, 546, 563, 636, 737, 740, 743, 750, 801
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 1 cut(s) 34
HhaI GCGC 1 cut(s) 550
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 2 cut(s) 422, 554
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 202, 218, 643
Hpy166II GTNNAC 2 cut(s) 79, 337
Hpy188I TCNGA 3 cut(s) 46, 430, 642
Hpy188III TCNNGA 4 cut(s) 136, 206, 239, 396
Hpy8I GTNNAC 2 cut(s) 79, 337
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 21, 50, 185
HpyCH4IV ACGT 2 cut(s) 760, 825
HpyCH4V TGCA 2 cut(s) 452, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 524, 742
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 760, 825
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 2 cut(s) 422, 554
HspAI GCGC 1 cut(s) 548
Kzo9I GATC 5 cut(s) 58, 222, 405, 442, 871
LmnI GCTCC 4 cut(s) 200, 458, 643, 787
Lsp1109I GCAGC 7 cut(s) 204, 532, 622, 723, 736, 754, 787
MaeI CTAG 2 cut(s) 98, 321
MaeII ACGT 2 cut(s) 760, 825
MaeIII GTNAC 2 cut(s) 602, 720
MalI GATC 5 cut(s) 60, 224, 407, 444, 873
MboI GATC 5 cut(s) 58, 222, 405, 442, 871
MboII GAAGA 8 cut(s) 25, 254, 381, 437, 560, 935, 944, 947
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 2 cut(s) 123, 258
MlyI GAGTC 3 cut(s) 211, 227, 637
MmeI TCCRAC 2 cut(s) 522, 665
MseI TTAA 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 545, 736
MspCI CTTAAG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 678, 786
MvaI CCWGG 2 cut(s) 678, 786
MwoI GCNNNNNNNGC 3 cut(s) 458, 524, 742
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 655
NdeII GATC 5 cut(s) 58, 222, 405, 442, 871
NlaIII CATG 2 cut(s) 422, 554
NlaIV GGNNCC 2 cut(s) 416, 729
NmuCI GTSAC 1 cut(s) 720
NsbI TGCGCA 1 cut(s) 549
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 9 cut(s) 194, 547, 564, 637, 738, 741, 744, 751, 802
PleI GAGTC 3 cut(s) 210, 226, 637
PpsI GAGTC 3 cut(s) 210, 226, 637
PpuMI RGGWCCY 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 676, 784
PspGI CCWGG 2 cut(s) 676, 784
PspN4I GGNNCC 2 cut(s) 416, 729
PspPI GGNCC 3 cut(s) 32, 341, 680
PspPPI RGGWCCY 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 3 cut(s) 280, 287, 338
RsaNI GTAC 3 cut(s) 279, 286, 337
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 9 cut(s) 193, 546, 563, 636, 737, 740, 743, 750, 801
Sau3AI GATC 5 cut(s) 58, 222, 405, 442, 871
Sau96I GGNCC 3 cut(s) 32, 341, 680
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 3 cut(s) 211, 227, 637
ScrFI CCNGG 2 cut(s) 678, 786
SduI GDGCHC 1 cut(s) 784
SinI GGWCC 2 cut(s) 341, 680
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 2 cut(s) 123, 258
SsiI CCGC 3 cut(s) 563, 734, 740
SspI AATATT 3 cut(s) 248, 494, 508
SspMI CTAG 2 cut(s) 98, 321
StyD4I CCNGG 2 cut(s) 676, 784
StyI CCWWGG 2 cut(s) 418, 795
TaaI ACNGT 3 cut(s) 21, 50, 185
TaiI ACGT 2 cut(s) 763, 828
TaqI TCGA 1 cut(s) 221
TasI AATT 2 cut(s) 123, 258
TatI WGTACW 1 cut(s) 278
TauI GCSGC 2 cut(s) 565, 742
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 2 cut(s) 55, 862
TseFI GTSAC 1 cut(s) 720
TseI GCWGC 7 cut(s) 192, 545, 635, 736, 742, 749, 800
Tsp45I GTSAC 1 cut(s) 720
TspDTI ATGAA 4 cut(s) 372, 470, 864, 945
TspGWI ACGGA 3 cut(s) 171, 279, 354
TspRI CASTG 2 cut(s) 55, 862
Van91I CCANNNNNTGG 1 cut(s) 596
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 341, 680
XagI CCTNNNNNAGG 2 cut(s) 88, 675
XspI CTAG 2 cut(s) 98, 321
ZraI GACGTC 1 cut(s) 761
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.