Rroxscaffold_3G00219510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000621
Physical Location & Seq
Reverse (-)
1626389 .. 1627246
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219510.1

Sequence Viewer

Length: 447 bp
ATGTCGGACGCCACCATTCCGGCGCGTTGCCGGAATCGAGTCAACGTTTCCAGCCTTTGTCGGATCGATGCCACCGCTATTACCGGCTTGAAACTTGACACCGCAAATCCAAGTTCGATGGCTTTCGCATCGTGGGGAGGAGCGTCGCTAGTGAGAAGTTCGATGGTGTCGGCGTCGGTGGAGATAAGGTGGACTCTACTAGAAGACGGCCCGATTCCCCGCTTGCTTCCACACCTCAAGGTTCTTGGACCGGACAAGAACACCGAAGTTGAACCTTCGAAACAAGAGGAATTTGTTGCTTTAGTCACCGAGGAGGAGGATGTTGGCCCCGCTGCTTGGAAGAGTATGAAGAAGAAAATCCAAGAAGTACCACTAAATGCAACCACCATTTTCACCTTGCTTGCATTCTTGAATGGATGGAATGAAGTGACTCATGTCCGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.19

Weight (kDa)

6.12

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 4 cut(s) 75, 102, 220, 330
AclI AACGTT 1 cut(s) 45
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 290
AcyI GRCGYC 2 cut(s) 9, 173
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 3 cut(s) 91, 272, 412
AlwI GGATC 1 cut(s) 71
AoxI GGCC 2 cut(s) 208, 325
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 209, 248, 326
AsuHPI GGTGA 2 cut(s) 298, 385
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 112, 157, 411
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 2 cut(s) 149, 200
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 209, 248, 326
BmiI GGNNCC 1 cut(s) 328
BmsI GCATC 2 cut(s) 58, 137
BoxI GACNNNNGTC 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 9, 173
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 325, 422
BseLI CCNNNNNNNGG 1 cut(s) 336
BseRI GAGGAG 3 cut(s) 153, 326, 329
BseXI GCAGC 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 210, 327
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 4 cut(s) 20, 31, 84, 251
BslI CCNNNNNNNGG 1 cut(s) 336
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 2 cut(s) 210, 327
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 4 cut(s) 75, 102, 220, 330
BspANI GGCC 2 cut(s) 210, 327
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 2 cut(s) 9, 173
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 2 cut(s) 9, 173
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 224, 402
BstF5I GGATG 2 cut(s) 325, 422
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 434
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 2 cut(s) 210, 327
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 2 cut(s) 325, 422
Cac8I GCNNGC 2 cut(s) 224, 402
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 209, 248, 326
ClaI ATCGAT 1 cut(s) 66
CseI GACGC 3 cut(s) 17, 132, 162
Csp6I GTAC 1 cut(s) 368
CviAII CATG 1 cut(s) 434
CviJI RGCY 5 cut(s) 54, 87, 122, 210, 327
CviKI_1 RGCY 5 cut(s) 54, 87, 122, 210, 327
CviQI GTAC 1 cut(s) 368
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 248
FaeI CATG 1 cut(s) 437
FaiI YATR 2 cut(s) 347, 435
FatI CATG 1 cut(s) 433
FauI CCCGC 2 cut(s) 227, 337
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 2 cut(s) 332, 429
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 2 cut(s) 149, 200
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 210, 327
HapII CCGG 4 cut(s) 20, 31, 84, 251
HgaI GACGC 3 cut(s) 17, 132, 162
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 2 cut(s) 9, 173
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 34, 39, 193, 214, 430
HpaII CCGG 4 cut(s) 20, 31, 84, 251
HphI GGTGA 2 cut(s) 298, 385
Hpy166II GTNNAC 2 cut(s) 43, 192
Hpy188I TCNGA 2 cut(s) 7, 63
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 2 cut(s) 43, 192
Hpy99I CGWCG 2 cut(s) 148, 178
HpyAV CCTTC 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 380, 404
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 9, 173
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 33, 44, 64, 97, 264
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 2 cut(s) 58, 137
MaeI CTAG 2 cut(s) 149, 200
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 304, 427
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 215, 352, 361, 364
MluCI AATT 1 cut(s) 290
MlyI GAGTC 3 cut(s) 48, 187, 424
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 6 cut(s) 131, 245, 280, 304, 307, 310
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 4 cut(s) 20, 31, 84, 251
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 1 cut(s) 25
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 304, 427
NspV TTCGAA 1 cut(s) 278
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 34, 214
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 3 cut(s) 47, 187, 424
PpsI GAGTC 3 cut(s) 47, 187, 424
PshAI GACNNNNGTC 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 3 cut(s) 209, 248, 326
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 438
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 3 cut(s) 209, 248, 326
SchI GAGTC 3 cut(s) 48, 187, 424
SetI ASST 6 cut(s) 48, 191, 237, 243, 277, 398
SfaNI GCATC 2 cut(s) 58, 137
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 290
SsiI CCGC 4 cut(s) 75, 102, 220, 330
SspMI CTAG 2 cut(s) 149, 200
TaiI ACGT 1 cut(s) 48
TaqI TCGA 5 cut(s) 37, 66, 116, 161, 278
TasI AATT 1 cut(s) 290
TfiI GAWTC 2 cut(s) 34, 214
TseFI GTSAC 2 cut(s) 304, 427
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 2 cut(s) 304, 427
TspDTI ATGAA 2 cut(s) 362, 438
TspGWI ACGGA 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 290
XspI CTAG 2 cut(s) 149, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.