RLG00000007458

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
17037827 .. 17038177
351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007458

Sequence Viewer

Length: 351 bp
ATGTTCACCAATGGTTCAGAGCCAAATCAGCCTCCATACAATACCAACTATGGTGCTGAAGCTCCAGCTCATAATGGATATACAGGTCATACTCCTGCTCCTACATCTTATGGATACTATAACCCTGCTAACGGTCAGACCAAAAAAAAAACCCTGCTAACCATCTATCACAGGGCAGTCTTCCTTCTCCATCTTATGGATACTATAACCCAGCTAACCATGCATCAGAGGGCTGTTCTGCTTCACCCGCTCATGCCCCATATGGCAATTACCCTCCTTCGTCGACTTATGGCAATGGATTCTATGTACCCTCGATTGCACAAGGCGCCTGTTCGACGTCCTGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

10.06

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000621)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 283
AciI CCGC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 2 cut(s) 326, 337
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 131, 196
AluBI AGCT 3 cut(s) 62, 68, 214
AluI AGCT 3 cut(s) 62, 68, 214
AspLEI GCGC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 172
BccI CCATC 2 cut(s) 170, 198
BciVI GTATCC 2 cut(s) 107, 193
BfoI RGCGCY 1 cut(s) 329
BfuI GTATCC 2 cut(s) 107, 193
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 48
BsaHI GRCGYC 2 cut(s) 326, 337
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 196
Bse3DI GCAATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 131, 196
BseMI GCAATG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 131, 196
BspACI CCGC 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 300
BssNI GRCGYC 2 cut(s) 326, 337
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 326, 337
BstDEI CTNAG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstMWI GCNNNNNNNGC 4 cut(s) 28, 220, 247, 325
BstV2I GAAGAC 1 cut(s) 172
BsuI GTATCC 2 cut(s) 107, 193
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 220, 253
CviJI RGCY 6 cut(s) 22, 31, 62, 68, 214, 233
CviKI_1 RGCY 6 cut(s) 22, 31, 62, 68, 214, 233
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 345
DinI GGCGCC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 327
EheI GGCGCC 1 cut(s) 327
FaeI CATG 2 cut(s) 223, 256
FatI CATG 2 cut(s) 219, 252
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 283
GlaI GCGC 1 cut(s) 327
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 329
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 326, 337
Hin1II CATG 2 cut(s) 223, 256
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HinfI GANTC 1 cut(s) 299
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 6, 284
Hpy188I TCNGA 3 cut(s) 19, 138, 228
Hpy8I GTNNAC 2 cut(s) 6, 284
Hpy99I CGWCG 2 cut(s) 285, 339
HpyAV CCTTC 2 cut(s) 194, 287
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 223, 319
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 220, 247, 325
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 337
Hsp92I GRCGYC 2 cut(s) 326, 337
Hsp92II CATG 2 cut(s) 223, 256
HspAI GCGC 1 cut(s) 326
KasI GGCGCC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 67, 103
LpnPI CCDG 8 cut(s) 69, 78, 108, 138, 157, 167, 224, 342
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 337
MbiI CCGCTC 1 cut(s) 250
MboII GAAGA 1 cut(s) 172
MluCI AATT 1 cut(s) 267
Mly113I GGCGCC 1 cut(s) 326
MnlI CCTC 4 cut(s) 42, 222, 284, 321
Mph1103I ATGCAT 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 28, 220, 247, 325
NarI GGCGCC 1 cut(s) 326
NdeI CATATG 1 cut(s) 261
NlaIII CATG 2 cut(s) 223, 256
NlaIV GGNNCC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 225
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 196
PluTI GGCGCC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 327
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SalI GTCGAC 1 cut(s) 282
SetI ASST 5 cut(s) 64, 70, 88, 216, 340
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 327
Sse9I AATT 1 cut(s) 267
SsiI CCGC 1 cut(s) 248
SspDI GGCGCC 1 cut(s) 325
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 340
TaqI TCGA 3 cut(s) 283, 313, 334
TasI AATT 1 cut(s) 267
TfiI GAWTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 283
ZraI GACGTC 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.