Rh4AG256000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000621
Physical Location & Seq
Reverse (-)
57056134 .. 57057625
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG256000.1

Sequence Viewer

Length: 498 bp
ATGCTTCCTACCAATACAGATCAGGTTTTCCGATTCCGGCCAACCGATCACACAATGTCACATTATCCCCAGATGATGAACCCAGGCGCCATGTTCGCCAATGGTTCTGATCAGAATAAGCCTTCATATAATCCCAACTTTGGGGCTCCTGCACCATTTGCTCATAATGGATATCCAAGTTACAATAATTATGCACATCCTCCTCAACCTCATGGTTACTATAACAACCAATACCCATCACAGTCAGCTCCTGATCCTGCTGCTCATACTCCCTATGGTGGATATAGCAACCATTTCGCTCCTCCACCATCTTACTATGATCCAGTCTCACAGGCGCCTGTTGCACCTCAGTATCCTAGTAAGCCCAGGAGTAGTAAAGGTAGCAAAAGAACATCTTACAATGTTTCTGGGAATCGAGTCAGCGGAAACAAAGGAGACCATAATGGAGTTTTCAACATTGGCAACAAGAATACTCGTTACAACGATGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

165

Amino Acids

18.29

Weight (kDa)

8.71

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 334
AciI CCGC 1 cut(s) 423
AclWI GGATC 2 cut(s) 248, 314
AcoI YGGCCR 1 cut(s) 38
AcyI GRCGYC 2 cut(s) 87, 335
AfiI CCNNNNNNNGG 3 cut(s) 140, 141, 278
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 2 cut(s) 82, 365
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 331, 429
AlwI GGATC 2 cut(s) 248, 314
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 89, 337
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BanI GGYRCC 2 cut(s) 86, 334
BanII GRGCYC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 244, 316
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 2 cut(s) 84, 367
BciVI GTATCC 1 cut(s) 363
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 331, 429
BfaI CTAG 1 cut(s) 357
BfoI RGCGCY 2 cut(s) 90, 338
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 84, 367
BmiI GGNNCC 3 cut(s) 88, 147, 336
BmrFI CCNGG 2 cut(s) 84, 367
BsaHI GRCGYC 2 cut(s) 87, 335
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 82, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 141, 278
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 2 cut(s) 84, 367
BseDI CCNNGG 2 cut(s) 82, 365
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 140, 141, 278
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 192, 291
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 2 cut(s) 86, 334
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 140, 141, 278
BsmAI GTCTC 2 cut(s) 331, 429
BsnI GGCC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 5 cut(s) 19, 46, 109, 253, 319
BspACI CCGC 1 cut(s) 423
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 88, 147, 336
BspPI GGATC 2 cut(s) 248, 314
BspT107I GGYRCC 2 cut(s) 86, 334
BspTNI GGTCTC 1 cut(s) 429
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 82, 365
BssMI GATC 5 cut(s) 19, 46, 109, 253, 319
BssNI GRCGYC 2 cut(s) 87, 335
Bst2UI CCWGG 2 cut(s) 84, 367
Bst4CI ACNGT 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 87, 335
BstAPI GCANNNNNTGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 2 cut(s) 90, 338
BstHHI GCGC 2 cut(s) 89, 337
BstKTI GATC 5 cut(s) 22, 49, 112, 256, 322
BstMAI GTCTC 2 cut(s) 331, 429
BstMBI GATC 5 cut(s) 19, 46, 109, 253, 319
BstMWI GCNNNNNNNGC 3 cut(s) 95, 158, 341
BstNI CCWGG 2 cut(s) 84, 367
BstSCI CCNGG 2 cut(s) 82, 365
BstV1I GCAGC 1 cut(s) 247
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 2 cut(s) 89, 337
CviAII CATG 2 cut(s) 91, 212
CviJI RGCY 5 cut(s) 40, 121, 146, 248, 364
CviKI_1 RGCY 5 cut(s) 40, 121, 146, 248, 364
DdeI CTNAG 1 cut(s) 348
DinI GGCGCC 2 cut(s) 88, 336
DpnI GATC 5 cut(s) 21, 48, 111, 255, 321
DpnII GATC 5 cut(s) 19, 46, 109, 253, 319
EaeI YGGCCR 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 429
Eco32I GATATC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 82, 365
EcoRV GATATC 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 148
EgeI GGCGCC 2 cut(s) 88, 336
EheI GGCGCC 2 cut(s) 88, 336
FaeI CATG 2 cut(s) 94, 215
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 2 cut(s) 90, 211
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 357
GlaI GCGC 2 cut(s) 88, 336
GluI GCNGC 1 cut(s) 261
HaeII RGCGCY 2 cut(s) 90, 338
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 37
HhaI GCGC 2 cut(s) 89, 337
Hin1I GRCGYC 2 cut(s) 87, 335
Hin1II CATG 2 cut(s) 94, 215
Hin6I GCGC 2 cut(s) 87, 335
HinP1I GCGC 2 cut(s) 87, 335
HinfI GANTC 3 cut(s) 33, 412, 417
HpaII CCGG 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 32, 109, 114
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 152, 194, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 158, 341
HpyF3I CTNAG 1 cut(s) 348
Hsp92I GRCGYC 2 cut(s) 87, 335
Hsp92II CATG 2 cut(s) 94, 215
HspAI GCGC 2 cut(s) 87, 335
KasI GGCGCC 2 cut(s) 86, 334
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 19, 46, 109, 253, 319
LmnI GCTCC 3 cut(s) 151, 253, 304
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 4 cut(s) 57, 179, 215, 476
MalI GATC 5 cut(s) 21, 48, 111, 255, 321
MboI GATC 5 cut(s) 19, 46, 109, 253, 319
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 187
Mly113I GGCGCC 2 cut(s) 87, 335
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 5 cut(s) 210, 213, 219, 312, 357
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 84, 367
MvaI CCWGG 2 cut(s) 84, 367
MwoI GCNNNNNNNGC 3 cut(s) 95, 158, 341
NarI GGCGCC 2 cut(s) 87, 335
NdeII GATC 5 cut(s) 19, 46, 109, 253, 319
NlaIII CATG 2 cut(s) 94, 215
NlaIV GGNNCC 3 cut(s) 88, 147, 336
NmuCI GTSAC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 33, 412
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 425
PluTI GGCGCC 2 cut(s) 90, 338
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 82, 365
PspGI CCWGG 2 cut(s) 82, 365
PspN4I GGNNCC 3 cut(s) 88, 147, 336
PstNI CAGNNNCTG 1 cut(s) 251
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 5 cut(s) 19, 46, 109, 253, 319
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 2 cut(s) 84, 367
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 27, 211, 250, 349, 382
SfoI GGCGCC 2 cut(s) 88, 336
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 423
SspDI GGCGCC 2 cut(s) 86, 334
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 82, 365
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 415
TasI AATT 1 cut(s) 187
TfiI GAWTC 2 cut(s) 33, 412
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 92, 114
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.