Rh4DG255800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000621
Physical Location & Seq
Reverse (-)
47143874 .. 47144580
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG255800.1

Sequence Viewer

Length: 384 bp
ATGGCGCTCAAGCTCCACCTCATAATGGAGATCCAGGTTATGCTACTCCTCCTCCTTCATCTTATGGATACTATAACCCTATCCATCCATCACCGGGCGGTCCTGGTTCACCTGCTCATGCGCCATATGGCTATTCCGCTCCTCCTCCATCTTATAACAATGGTATACTATGACCATCCATTCTATCAGGCGCCTGTTCGACGTCCTAGTAAACCCAGGGCTCCTAGTAAGCCCAAGGCTTGCACTCGAAACAACATAATTTACAGGGTTCAAGGAAATCGAGTCAGTGGAAACACTGGGGACCATAATGGAGTCTTCAACGTTGGCAACAAAAATTCTAGTCGCGAGGTGGACGATCACAATGAGGAAGATGAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

127

Amino Acids

14.65

Weight (kDa)

8.01

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AarI CACCTGC 1 cut(s) 120
AatII GACGTC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 345
AciI CCGC 2 cut(s) 98, 137
AclI AACGTT 1 cut(s) 321
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 191, 202
AfiI CCNNNNNNNGG 2 cut(s) 25, 94
AgsI TTSAA 2 cut(s) 272, 319
AjnI CCWGG 3 cut(s) 33, 102, 215
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 3 cut(s) 7, 123, 193
AspS9I GGNCC 2 cut(s) 100, 301
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 83, 101
AvaII GGWCC 2 cut(s) 100, 301
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 307
BccI CCATC 4 cut(s) 92, 96, 156, 183
BciT130I CCWGG 3 cut(s) 35, 104, 217
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 95
BfaI CTAG 3 cut(s) 207, 225, 339
BfoI RGCGCY 2 cut(s) 8, 194
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 61
Bme1390I CCNGG 4 cut(s) 35, 95, 104, 217
Bme18I GGWCC 2 cut(s) 100, 301
BmgT120I GGNCC 2 cut(s) 100, 301
BmiI GGNNCC 3 cut(s) 192, 222, 302
BmrFI CCNGG 4 cut(s) 35, 95, 104, 217
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 95
BsaHI GRCGYC 2 cut(s) 191, 202
BsaJI CCNNGG 3 cut(s) 215, 216, 234
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 94
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 3 cut(s) 35, 104, 217
BseDI CCNNGG 3 cut(s) 215, 216, 234
BseGI GGATG 2 cut(s) 84, 175
BseLI CCNNNNNNNGG 2 cut(s) 25, 94
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 4 cut(s) 38, 41, 131, 134
Bsh1236I CGCG 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 25, 94
BsmFI GGGAC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 30, 355
Bsp68I TCGCGA 1 cut(s) 345
BspACI CCGC 2 cut(s) 98, 137
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 192, 222, 302
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 3 cut(s) 215, 216, 234
BssMI GATC 2 cut(s) 30, 355
BssNAI GTATAC 1 cut(s) 166
BssNI GRCGYC 2 cut(s) 191, 202
BssT1I CCWWGG 1 cut(s) 234
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 3 cut(s) 35, 104, 217
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 2 cut(s) 191, 202
BstC8I GCNNGC 1 cut(s) 241
BstF5I GGATG 2 cut(s) 84, 175
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 2 cut(s) 8, 194
BstHHI GCGC 3 cut(s) 7, 123, 193
BstKTI GATC 2 cut(s) 33, 358
BstMBI GATC 2 cut(s) 30, 355
BstNI CCWGG 3 cut(s) 35, 104, 217
BstSCI CCNGG 4 cut(s) 33, 93, 102, 215
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 166
BsuI GTATCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 84, 175
BtsIMutI CAGTG 2 cut(s) 292, 294
BtuMI TCGCGA 1 cut(s) 345
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 3 cut(s) 7, 123, 193
Cfr13I GGNCC 2 cut(s) 100, 301
CviAII CATG 1 cut(s) 118
CviJI RGCY 5 cut(s) 13, 131, 221, 232, 239
CviKI_1 RGCY 5 cut(s) 13, 131, 221, 232, 239
DinI GGCGCC 1 cut(s) 192
DpnI GATC 2 cut(s) 32, 357
DpnII GATC 2 cut(s) 30, 355
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 100, 301
EcoRII CCWGG 3 cut(s) 33, 102, 215
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 121
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 117
FauNDI CATATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 71, 162
FriOI GRGCYC 1 cut(s) 223
FspBI CTAG 3 cut(s) 207, 225, 339
GlaI GCGC 3 cut(s) 6, 122, 192
HaeII RGCGCY 2 cut(s) 8, 194
HapII CCGG 1 cut(s) 94
HhaI GCGC 3 cut(s) 7, 123, 193
Hin1I GRCGYC 2 cut(s) 191, 202
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 3 cut(s) 5, 121, 191
HinP1I GCGC 3 cut(s) 5, 121, 191
HinfI GANTC 2 cut(s) 282, 312
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 83, 101
Hpy166II GTNNAC 4 cut(s) 109, 166, 212, 352
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 4 cut(s) 109, 166, 212, 352
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 202, 321
HpyCH4V TGCA 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 202, 321
Hsp92I GRCGYC 2 cut(s) 191, 202
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 3 cut(s) 5, 121, 191
KasI GGCGCC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 30, 355
LmnI GCTCC 3 cut(s) 18, 144, 226
MaeI CTAG 3 cut(s) 207, 225, 339
MaeII ACGT 2 cut(s) 202, 321
MalI GATC 2 cut(s) 32, 357
MbiI CCGCTC 1 cut(s) 139
MboI GATC 2 cut(s) 30, 355
MboII GAAGA 2 cut(s) 307, 380
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 2 cut(s) 258, 334
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 2 cut(s) 291, 321
MnlI CCTC 7 cut(s) 29, 59, 62, 152, 155, 340, 358
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 4 cut(s) 35, 95, 104, 217
MvaI CCWGG 3 cut(s) 35, 104, 217
MvnI CGCG 1 cut(s) 345
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 126
NdeII GATC 2 cut(s) 30, 355
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 3 cut(s) 192, 222, 302
NruI TCGCGA 1 cut(s) 345
PaqCI CACCTGC 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 216
PleI GAGTC 2 cut(s) 290, 320
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 2 cut(s) 290, 320
PsiI TTATAA 1 cut(s) 155
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 3 cut(s) 33, 102, 215
PspGI CCWGG 3 cut(s) 33, 102, 215
PspN4I GGNNCC 3 cut(s) 192, 222, 302
PspPI GGNCC 2 cut(s) 100, 301
PsuI RGATCY 1 cut(s) 30
RruI TCGCGA 1 cut(s) 345
Sau3AI GATC 2 cut(s) 30, 355
Sau96I GGNCC 2 cut(s) 100, 301
SchI GAGTC 2 cut(s) 291, 321
ScrFI CCNGG 4 cut(s) 35, 95, 104, 217
SduI GDGCHC 1 cut(s) 223
SetI ASST 7 cut(s) 15, 21, 39, 114, 205, 324, 351
SfoI GGCGCC 1 cut(s) 192
SinI GGWCC 2 cut(s) 100, 301
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 258, 334
SsiI CCGC 2 cut(s) 98, 137
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 3 cut(s) 207, 225, 339
StyD4I CCNGG 4 cut(s) 33, 93, 102, 215
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 2 cut(s) 205, 324
TaqI TCGA 3 cut(s) 199, 247, 280
TasI AATT 2 cut(s) 258, 334
TscAI CASTG 2 cut(s) 292, 301
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 2 cut(s) 292, 301
VpaK11BI GGWCC 2 cut(s) 100, 301
XapI RAATTY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 3 cut(s) 207, 225, 339
ZraI GACGTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.