Rh4CG272600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Reverse (-)
52710756 .. 52711181
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG272600.1

Sequence Viewer

Length: 426 bp
ATGATGAACCCAGGCGCCATGTTCGCCAATGGTTCTGATCAGAATAAGCCTTCAAATAATCCCAACTTTGGGGCTCCTGCACCATTTGCTCATAATGGATATCCAAGTTACAATAATTATGCACATCCTCCTCAACCTCATGGTTACTATAACAACCAATACCCATCACAGTCAGCTCCTGATCCTGCTGCTCATACTCCCTATGGTGGATATAGCAACCATTTCGCTCCTCCACCATCTTACTACGATCCAGTCTCACAGGCGCCTGTTGCGCCTCAGTATCCTAGTAAGCCCAGGAGTAGTAAAGGTAGCAAAAGAACATCTTACAATGTTTCTGGGAATCGAGTCAGCGGAAACAAAGGAGACCATAATGGAGTTTTCAACATTGGCAACAAGAATACTCGGTACAACGATGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

141

Amino Acids

15.34

Weight (kDa)

8.76

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 262
AciI CCGC 1 cut(s) 351
AclWI GGATC 2 cut(s) 176, 242
AcyI GRCGYC 2 cut(s) 15, 263
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 68, 69, 206
AgsI TTSAA 2 cut(s) 54, 382
AjnI CCWGG 2 cut(s) 10, 293
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 259, 357
AlwI GGATC 2 cut(s) 176, 242
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 17, 265, 274
BanI GGYRCC 2 cut(s) 14, 262
BanII GRGCYC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 172, 244
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 2 cut(s) 12, 295
BciVI GTATCC 1 cut(s) 291
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 259, 357
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 2 cut(s) 18, 266
BfuI GTATCC 1 cut(s) 291
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 12, 295
BmiI GGNNCC 3 cut(s) 16, 75, 264
BmrFI CCNGG 2 cut(s) 12, 295
BsaHI GRCGYC 2 cut(s) 15, 263
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 10, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 69, 206
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 2 cut(s) 12, 295
BseDI CCNNGG 2 cut(s) 10, 293
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 68, 69, 206
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 120, 219
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 63
BshNI GGYRCC 2 cut(s) 14, 262
BslI CCNNNNNNNGG 3 cut(s) 68, 69, 206
BsmAI GTCTC 2 cut(s) 259, 357
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 37, 181, 247
BspACI CCGC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 16, 75, 264
BspPI GGATC 2 cut(s) 176, 242
BspT107I GGYRCC 2 cut(s) 14, 262
BspTNI GGTCTC 1 cut(s) 357
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 10, 293
BssMI GATC 3 cut(s) 37, 181, 247
BssNI GRCGYC 2 cut(s) 15, 263
Bst2UI CCWGG 2 cut(s) 12, 295
Bst4CI ACNGT 1 cut(s) 171
BstACI GRCGYC 2 cut(s) 15, 263
BstAPI GCANNNNNTGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 124
BstH2I RGCGCY 2 cut(s) 18, 266
BstHHI GCGC 3 cut(s) 17, 265, 274
BstKTI GATC 3 cut(s) 40, 184, 250
BstMAI GTCTC 2 cut(s) 259, 357
BstMBI GATC 3 cut(s) 37, 181, 247
BstMWI GCNNNNNNNGC 4 cut(s) 23, 86, 269, 271
BstNI CCWGG 2 cut(s) 12, 295
BstSCI CCNGG 2 cut(s) 10, 293
BstV1I GCAGC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 3 cut(s) 17, 265, 274
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 19, 140
CviJI RGCY 4 cut(s) 49, 74, 176, 292
CviKI_1 RGCY 4 cut(s) 49, 74, 176, 292
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 276
DinI GGCGCC 2 cut(s) 16, 264
DpnI GATC 3 cut(s) 39, 183, 249
DpnII GATC 3 cut(s) 37, 181, 247
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 10, 293
EcoRV GATATC 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 76
EgeI GGCGCC 2 cut(s) 16, 264
EheI GGCGCC 2 cut(s) 16, 264
FaeI CATG 2 cut(s) 22, 143
FaiI YATR 9 cut(s) 20, 93, 120, 141, 150, 195, 204, 213, 369
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 2 cut(s) 18, 139
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 285
GlaI GCGC 3 cut(s) 16, 264, 273
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 2 cut(s) 18, 266
HhaI GCGC 3 cut(s) 17, 265, 274
Hin1I GRCGYC 2 cut(s) 15, 263
Hin1II CATG 2 cut(s) 22, 143
Hin6I GCGC 3 cut(s) 15, 263, 272
HinP1I GCGC 3 cut(s) 15, 263, 272
HinfI GANTC 2 cut(s) 340, 345
Hpy188I TCNGA 2 cut(s) 37, 42
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 80, 122
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 86, 269, 271
HpyF3I CTNAG 1 cut(s) 276
Hsp92I GRCGYC 2 cut(s) 15, 263
Hsp92II CATG 2 cut(s) 22, 143
HspAI GCGC 3 cut(s) 15, 263, 272
KasI GGCGCC 2 cut(s) 14, 262
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 3 cut(s) 37, 181, 247
LmnI GCTCC 3 cut(s) 79, 181, 232
Lsp1109I GCAGC 1 cut(s) 175
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 107, 143
MalI GATC 3 cut(s) 39, 183, 249
MboI GATC 3 cut(s) 37, 181, 247
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 115
Mly113I GGCGCC 2 cut(s) 15, 263
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 5 cut(s) 138, 141, 147, 240, 285
MspA1I CMGCKG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 12, 295
MvaI CCWGG 2 cut(s) 12, 295
MwoI GCNNNNNNNGC 4 cut(s) 23, 86, 269, 271
NarI GGCGCC 2 cut(s) 15, 263
NdeII GATC 3 cut(s) 37, 181, 247
NlaIII CATG 2 cut(s) 22, 143
NlaIV GGNNCC 3 cut(s) 16, 75, 264
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 353
PluTI GGCGCC 2 cut(s) 18, 266
PpsI GAGTC 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 10, 293
PspGI CCWGG 2 cut(s) 10, 293
PspN4I GGNNCC 3 cut(s) 16, 75, 264
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 3 cut(s) 37, 181, 247
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 12, 295
SduI GDGCHC 1 cut(s) 76
SetI ASST 3 cut(s) 139, 178, 310
SfoI GGCGCC 2 cut(s) 16, 264
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 351
SspDI GGCGCC 2 cut(s) 14, 262
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 10, 293
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 343
TasI AATT 1 cut(s) 115
TfiI GAWTC 1 cut(s) 340
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 20
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.