RLG00000008017

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
24336367 .. 24337475
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008017

Sequence Viewer

Length: 789 bp
ATGTCGTCTAGTCCCAACCAGAGTTTTAAGCAGTCCGATGAAACAAAACCCTTAAAGCTTGGGCCGTTCGGATCTGAAAACGGAGGGGAAAGTTTTGATGATGGAATTCACTCAACGGTCAGGCAGTTGGTGATATCTACCAACGATCAGGCTTCGAGAATTGTCTCCATCCAGATTGAATATGACGACAACGGGAGTTCTTTTTTATCAGACAAGCATGGTAAAGAAGACAATTACTATACTTACACGATCAGGCTAGACTATCCGTACGAATTTTTAACTTCAGTTCATGGAAAATATTTTAAGCTTTGGCGCCTCCCAACCTATATCTGCTCCCTTACTTTTAGGAGCAACAGGAAAACTTACGGACCATATGGAGATGAAGGAAGCCTGGGAAAGTATTTTTCAATCCAAGCGCCTGGGAAAATGATTGTTGGCTTTCATGGTAGGACTTCCATGTTCATGAATCTCCGAGCACTAGGAGCTTACCTAAAGCCTGTCGATCATAATCTGAATGAAAAGTACAACCCCTCTAAACATCTCGATGATAAAGGATCTTCCATGGTGCCGGCATCACTAGATCCAGCAAATCCTCTACTTCCAGCTACATATCCTTTTCAAATCATAAAGAAACACGAAGATGAAGGTGATAAACAGATATCATGCATAATATCAGGTAATGAAGTTAGCGGAAACGAGGGCAACCGCAGTGGAGGGTTCGCAGTTGGAAACAAATATATTAATACTTACTACCATTATTCAGAAAAGTTCAAGGCAATGTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

263

Amino Acids

29.5

Weight (kDa)

7.09

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 20 - 163 8.3e-32 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 312, 565
AciI CCGC 2 cut(s) 690, 706
AclWI GGATC 3 cut(s) 79, 562, 575
AcsI RAATTY 2 cut(s) 105, 272
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 3 cut(s) 269, 524, 782
AgsI TTSAA 4 cut(s) 179, 408, 620, 772
AjnI CCWGG 2 cut(s) 390, 418
AluBI AGCT 4 cut(s) 58, 307, 485, 605
AluI AGCT 4 cut(s) 58, 307, 485, 605
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 3 cut(s) 79, 562, 575
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 105, 272
AseI ATTAAT 1 cut(s) 741
AspLEI GCGC 2 cut(s) 315, 418
AspS9I GGNCC 2 cut(s) 62, 368
AsuHPI GGTGA 2 cut(s) 142, 659
AvaII GGWCC 1 cut(s) 368
BanI GGYRCC 2 cut(s) 312, 565
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 478
BccI CCATC 2 cut(s) 95, 176
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 392, 420
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 4 cut(s) 9, 257, 479, 578
BfoI RGCGCY 2 cut(s) 316, 419
Bme1390I CCNGG 2 cut(s) 392, 420
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 62, 368
BmiI GGNNCC 2 cut(s) 314, 567
BmrFI CCNGG 2 cut(s) 392, 420
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 391, 419, 561
Bse118I RCCGGY 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 2 cut(s) 392, 420
BseDI CCNNGG 3 cut(s) 391, 419, 561
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 507
BseMI GCAATG 1 cut(s) 783
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 2 cut(s) 312, 565
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 569
BsiWI CGTACG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 6 cut(s) 71, 145, 249, 502, 554, 580
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 2 cut(s) 690, 706
BspANI GGCC 1 cut(s) 64
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 314, 567
BspPI GGATC 3 cut(s) 79, 562, 575
BspT107I GGYRCC 2 cut(s) 312, 565
BsrDI GCAATG 1 cut(s) 783
BsrFI RCCGGY 1 cut(s) 568
BsrGI TGTACA 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 3 cut(s) 391, 419, 561
BssMI GATC 6 cut(s) 71, 145, 249, 502, 554, 580
BssNI GRCGYC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 2 cut(s) 392, 420
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 780
BstC8I GCNNGC 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 2 cut(s) 316, 419
BstHHI GCGC 2 cut(s) 315, 418
BstKTI GATC 6 cut(s) 74, 148, 252, 505, 557, 583
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 6 cut(s) 71, 145, 249, 502, 554, 580
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 2 cut(s) 392, 420
BstSCI CCNGG 2 cut(s) 390, 418
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 71, 554, 580
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 3 cut(s) 71, 554, 580
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 1 cut(s) 570
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 315, 418
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 62, 368
Csp6I GTAC 3 cut(s) 268, 523, 781
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 7 cut(s) 218, 290, 443, 457, 463, 562, 663
CviQI GTAC 3 cut(s) 268, 523, 781
DinI GGCGCC 1 cut(s) 314
DpnI GATC 6 cut(s) 73, 147, 251, 504, 556, 582
DpnII GATC 6 cut(s) 71, 145, 249, 502, 554, 580
Eco130I CCWWGG 1 cut(s) 561
Eco32I GATATC 2 cut(s) 135, 660
Eco47I GGWCC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 390, 418
EcoRV GATATC 2 cut(s) 135, 660
EcoT14I CCWWGG 1 cut(s) 561
EcoT22I ATGCAT 1 cut(s) 668
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 7 cut(s) 221, 293, 446, 460, 466, 565, 666
FatI CATG 7 cut(s) 217, 289, 442, 456, 462, 561, 662
FauNDI CATATG 1 cut(s) 373
FokI GGATG 1 cut(s) 155
FspBI CTAG 4 cut(s) 9, 257, 479, 578
GlaI GCGC 2 cut(s) 314, 417
HaeII RGCGCY 2 cut(s) 316, 419
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 569
HhaI GCGC 2 cut(s) 315, 418
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 7 cut(s) 221, 293, 446, 460, 466, 565, 666
Hin6I GCGC 2 cut(s) 313, 416
HinP1I GCGC 2 cut(s) 313, 416
HindIII AAGCTT 2 cut(s) 56, 305
HinfI GANTC 1 cut(s) 466
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 142, 659
Hpy188I TCNGA 7 cut(s) 37, 71, 76, 211, 473, 513, 763
Hpy188III TCNNGA 4 cut(s) 156, 172, 463, 542
HpyAV CCTTC 2 cut(s) 377, 638
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 666
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 7 cut(s) 221, 293, 446, 460, 466, 565, 666
HspAI GCGC 2 cut(s) 313, 416
KasI GGCGCC 1 cut(s) 312
KroI GCCGGC 1 cut(s) 568
KroNI GCCGGC 1 cut(s) 570
Kzo9I GATC 6 cut(s) 71, 145, 249, 502, 554, 580
LmnI GCTCC 3 cut(s) 338, 348, 482
LweI GCATC 1 cut(s) 581
MaeI CTAG 4 cut(s) 9, 257, 479, 578
MalI GATC 6 cut(s) 73, 147, 251, 504, 556, 582
MboI GATC 6 cut(s) 71, 145, 249, 502, 554, 580
MboII GAAGA 3 cut(s) 239, 549, 650
MfeI CAATTG 1 cut(s) 784
MflI RGATCY 3 cut(s) 71, 554, 580
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 5 cut(s) 105, 159, 232, 272, 784
Mly113I GGCGCC 1 cut(s) 313
MmeI TCCRAC 1 cut(s) 706
MnlI CCTC 6 cut(s) 77, 326, 541, 603, 691, 707
Mph1103I ATGCAT 1 cut(s) 668
MroNI GCCGGC 1 cut(s) 568
MseI TTAA 5 cut(s) 27, 53, 278, 303, 741
MslI CAYNNNNRTG 3 cut(s) 461, 543, 639
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 2 cut(s) 392, 420
MunI CAATTG 1 cut(s) 784
MvaI CCWGG 2 cut(s) 392, 420
MwoI GCNNNNNNNGC 1 cut(s) 482
NaeI GCCGGC 1 cut(s) 570
NarI GGCGCC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 561
NdeI CATATG 1 cut(s) 373
NdeII GATC 6 cut(s) 71, 145, 249, 502, 554, 580
NgoMIV GCCGGC 1 cut(s) 568
NlaIII CATG 7 cut(s) 221, 293, 446, 460, 466, 565, 666
NlaIV GGNNCC 2 cut(s) 314, 567
NsiI ATGCAT 1 cut(s) 668
PagI TCATGA 1 cut(s) 462
PdiI GCCGGC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 466
Pfl23II CGTACG 1 cut(s) 267
PluTI GGCGCC 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 741
Psp6I CCWGG 2 cut(s) 390, 418
PspGI CCWGG 2 cut(s) 390, 418
PspLI CGTACG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 314, 567
PspPI GGNCC 2 cut(s) 62, 368
PsuI RGATCY 3 cut(s) 71, 554, 580
RsaI GTAC 3 cut(s) 269, 524, 782
RsaNI GTAC 3 cut(s) 268, 523, 781
RseI CAYNNNNRTG 3 cut(s) 461, 543, 639
SaqAI TTAA 5 cut(s) 27, 53, 278, 303, 741
Sau3AI GATC 6 cut(s) 71, 145, 249, 502, 554, 580
Sau96I GGNCC 2 cut(s) 62, 368
ScrFI CCNGG 2 cut(s) 392, 420
SduI GDGCHC 1 cut(s) 478
SetI ASST 8 cut(s) 60, 309, 326, 487, 492, 607, 649, 679
SfaNI GCATC 1 cut(s) 581
SfoI GGCGCC 1 cut(s) 314
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 3 cut(s) 461, 543, 639
Sse9I AATT 5 cut(s) 105, 159, 232, 272, 784
SsiI CCGC 2 cut(s) 690, 706
SspDI GGCGCC 1 cut(s) 312
SspI AATATT 1 cut(s) 299
SspMI CTAG 4 cut(s) 9, 257, 479, 578
StyD4I CCNGG 2 cut(s) 390, 418
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 155, 501, 543
TasI AATT 5 cut(s) 105, 159, 232, 272, 784
TatI WGTACW 2 cut(s) 522, 780
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 5 cut(s) 27, 53, 278, 303, 741
Tru9I TTAA 5 cut(s) 27, 53, 278, 303, 741
TscAI CASTG 1 cut(s) 715
TspDTI ATGAA 9 cut(s) 54, 278, 396, 431, 451, 479, 531, 657, 696
TspGWI ACGGA 3 cut(s) 96, 255, 381
TspRI CASTG 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 368
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 2 cut(s) 105, 272
XspI CTAG 4 cut(s) 9, 257, 479, 578
Zsp2I ATGCAT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.