Rw7G016430

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000621
Physical Location & Seq
Forward (+)
16792687 .. 16793246
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016430.1

Sequence Viewer

Length: 375 bp
ATGAGTACTTTTGAGGAACCGGAGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTAGGCTCATGTGGCATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGCTTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

6.9

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 124 1.1e-31 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 255, 319, 356
AluBI AGCT 2 cut(s) 116, 226
AluI AGCT 2 cut(s) 116, 226
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 44, 341
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 44, 341
Bbv12I GWGCWC 1 cut(s) 170
BccI CCATC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 44, 341
BmgT120I GGNCC 2 cut(s) 44, 341
BmiI GGNNCC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 305, 332
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 305, 332
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 97, 295
BstAPI GCANNNNNTGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 2 cut(s) 308, 335
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 305, 332
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 73, 165
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 44, 341
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 6 cut(s) 48, 70, 77, 119, 188, 260
CviJI RGCY 6 cut(s) 57, 67, 116, 123, 204, 226
CviKI_1 RGCY 6 cut(s) 57, 67, 116, 123, 204, 226
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 298
DpnI GATC 2 cut(s) 307, 334
DpnII GATC 2 cut(s) 305, 332
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 44, 341
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 51, 73, 80, 122, 191, 263
FaiI YATR 9 cut(s) 49, 71, 78, 120, 153, 189, 261, 270, 339
FaqI GGGAC 1 cut(s) 304
FatI CATG 6 cut(s) 47, 69, 76, 118, 187, 259
FokI GGATG 1 cut(s) 125
FspBI CTAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 20
Hin1II CATG 6 cut(s) 51, 73, 80, 122, 191, 263
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 181, 305
Hpy188III TCNNGA 3 cut(s) 142, 236, 319
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 97, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 165
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 6 cut(s) 51, 73, 80, 122, 191, 263
Kzo9I GATC 2 cut(s) 305, 332
LpnPI CCDG 5 cut(s) 33, 111, 155, 190, 249
MaeI CTAG 1 cut(s) 63
MalI GATC 2 cut(s) 307, 334
MboI GATC 2 cut(s) 305, 332
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 4 cut(s) 104, 242, 255, 351
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 7, 47, 194, 232
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 73, 165
NcoI CCATGG 1 cut(s) 47
NdeII GATC 2 cut(s) 305, 332
NlaIII CATG 6 cut(s) 51, 73, 80, 122, 191, 263
NlaIV GGNNCC 1 cut(s) 18
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 44, 341
PsuI RGATCY 1 cut(s) 332
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 305, 332
Sau96I GGNCC 2 cut(s) 44, 341
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 118, 222, 228, 346
SinI GGWCC 2 cut(s) 44, 341
Sse9I AATT 4 cut(s) 104, 242, 255, 351
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 97, 295
TasI AATT 4 cut(s) 104, 242, 255, 351
TatI WGTACW 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 44, 341
XapI RAATTY 1 cut(s) 242
XspI CTAG 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.