Rmu_sc0004841.1_g000022

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004841.1
OG0000621
Physical Location & Seq
Forward (+)
104915 .. 107731
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004841.1_g000022.1.cds

Sequence Viewer

Length: 720 bp
atgagttttgagggttcaaagaaaaaagtcttctcagttgggccgtatgggtcaggcaaagggagcggtctttgggatgatggagttcactcaatggtgaggcaggtggtaatatattctgatcactcgggcattcgatggattcaatttgaatacgatgacaatgggagatcagtatggtcagaaatacatgggtatcgtcttcccgccatggtcgccggtaaaaaacacgtggtccaactggattttccagatgaatttttgacgtcactatgtggctcttattgggatcttatgtttatgccgagctatattaccaatcttcttttcaagagcaacagaagaacatatggaccatttggacctgatgatccaatgacaagacataggtctttttcaattgaaataagagggagtaagattgtcgggtttcatggcagggcagacctgtgggtcacagcacttcgttcaattggagcttacctgacgcccattgatggcgttgaacaccatgatgagaatgaaggcgttagctatccagcaaagcctctgcttccatctcaccattctactgtgcatacaatgacccagaaagacgaaaagcctaagaaagagatattttacataatttccggcaatcgagttagtgagaatgaaggggaccacaatggaacttttgttgttgggagcaaggctaaatatactgttattaacttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

239

Amino Acids

26.96

Weight (kDa)

7.22

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
AasI GACNNNNNNGTC 1 cut(s) 452
AatII GACGTC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 2 cut(s) 66, 207
AclWI GGATC 2 cut(s) 297, 365
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 232
AcyI GRCGYC 2 cut(s) 266, 488
AdeI CACNNNGTG 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 8 cut(s) 18, 146, 152, 331, 399, 404, 471, 506
AjuI GAANNNNNNNTTGG 4 cut(s) 231, 263, 311, 343
AluBI AGCT 3 cut(s) 309, 479, 534
AluI AGCT 3 cut(s) 309, 479, 534
AlwI GGATC 2 cut(s) 297, 365
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 5 cut(s) 41, 235, 353, 362, 661
AsuHPI GGTGA 2 cut(s) 109, 554
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 4 cut(s) 235, 353, 362, 661
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BbrPI CACGTG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 22, 194
BccI CCATC 4 cut(s) 74, 132, 491, 565
BceAI ACGGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 94
Bme18I GGWCC 4 cut(s) 235, 353, 362, 661
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 5 cut(s) 41, 235, 353, 362, 661
BmiI GGNNCC 1 cut(s) 662
BoxI GACNNNNGTC 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 22, 194
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 266, 488
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 246
BshFI GGCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 2 cut(s) 219, 633
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 127
Bsp143I GATC 4 cut(s) 121, 170, 289, 370
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 2 cut(s) 66, 207
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 662
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 2 cut(s) 297, 365
BsrBI CCGCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 4 cut(s) 121, 170, 289, 370
BssNI GRCGYC 2 cut(s) 266, 488
BssT1I CCWWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 574, 706
BstACI GRCGYC 2 cut(s) 266, 488
BstBAI YACGTR 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 34, 606
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 4 cut(s) 124, 173, 292, 373
BstMBI GATC 4 cut(s) 121, 170, 289, 370
BstMWI GCNNNNNNNGC 2 cut(s) 63, 215
BstPAI GACNNNNGTC 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 22, 194
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 5 cut(s) 41, 235, 353, 362, 661
CseI GACGC 1 cut(s) 496
CviAII CATG 4 cut(s) 191, 211, 434, 512
CviJI RGCY 8 cut(s) 43, 279, 309, 479, 534, 547, 604, 695
CviKI_1 RGCY 8 cut(s) 43, 279, 309, 479, 534, 547, 604, 695
DdeI CTNAG 2 cut(s) 34, 606
DpnI GATC 4 cut(s) 123, 172, 291, 372
DpnII GATC 4 cut(s) 121, 170, 289, 370
DraIII CACNNNGTG 1 cut(s) 275
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 4 cut(s) 235, 353, 362, 661
Eco72I CACGTG 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 194, 214, 437, 515
FaqI GGGAC 1 cut(s) 674
FatI CATG 4 cut(s) 190, 210, 433, 511
FauI CCCGC 1 cut(s) 214
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 121
FokI GGATG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 43
HapII CCGG 2 cut(s) 219, 633
HgaI GACGC 1 cut(s) 496
Hin1I GRCGYC 2 cut(s) 266, 488
Hin1II CATG 4 cut(s) 194, 214, 437, 515
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 219, 633
HphI GGTGA 2 cut(s) 109, 554
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 121, 184
Hpy188III TCNNGA 2 cut(s) 251, 331
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 518, 650
HpyCH4III ACNGT 2 cut(s) 574, 706
HpyCH4IV ACGT 2 cut(s) 231, 266
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 215
HpyF3I CTNAG 2 cut(s) 34, 606
HpySE526I ACGT 2 cut(s) 231, 266
Hsp92I GRCGYC 2 cut(s) 266, 488
Hsp92II CATG 4 cut(s) 194, 214, 437, 515
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 121, 170, 289, 370
LmnI GCTCC 3 cut(s) 63, 476, 687
MaeII ACGT 2 cut(s) 231, 266
MaeIII GTNAC 2 cut(s) 267, 454
MalI GATC 4 cut(s) 123, 172, 291, 372
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 121, 170, 289, 370
MboII GAAGA 4 cut(s) 22, 194, 314, 354
MfeI CAATTG 2 cut(s) 399, 471
MflI RGATCY 1 cut(s) 289
MluCI AATT 5 cut(s) 146, 257, 399, 471, 627
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 4 cut(s) 4, 93, 404, 558
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 2 cut(s) 219, 633
MunI CAATTG 2 cut(s) 399, 471
Mva1269I GAATGC 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 63, 215
NcoI CCATGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 121, 170, 289, 370
NlaIII CATG 4 cut(s) 194, 214, 437, 515
NlaIV GGNNCC 1 cut(s) 662
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 267, 454
PaqCI CACCTGC 1 cut(s) 94
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
PshAI GACNNNNGTC 1 cut(s) 388
PspCI CACGTG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 662
PspPI GGNCC 5 cut(s) 41, 235, 353, 362, 661
PsuI RGATCY 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 711
Sau3AI GATC 4 cut(s) 121, 170, 289, 370
Sau96I GGNCC 5 cut(s) 41, 235, 353, 362, 661
SinI GGWCC 4 cut(s) 235, 353, 362, 661
SmiMI CAYNNNNRTG 1 cut(s) 513
Sse9I AATT 5 cut(s) 146, 257, 399, 471, 627
SsiI CCGC 2 cut(s) 66, 207
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 574, 706
TaiI ACGT 2 cut(s) 234, 269
TaqI TCGA 2 cut(s) 136, 640
TasI AATT 5 cut(s) 146, 257, 399, 471, 627
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TseFI GTSAC 2 cut(s) 267, 454
Tsp45I GTSAC 2 cut(s) 267, 454
TspDTI ATGAA 4 cut(s) 270, 422, 537, 669
VpaK11BI GGWCC 4 cut(s) 235, 353, 362, 661
XapI RAATTY 1 cut(s) 257
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.