Rroxscaffold_3G00255600

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000621
Physical Location & Seq
Reverse (-)
49892800 .. 49893967
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255600.1

Sequence Viewer

Length: 729 bp
ATGAGTACTTTTGAGGAACCGGAGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTGGGCTCATGTGGGATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGATAAGTGAATGCGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTTCCAGTGACAACTGGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCTTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAATACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGATCCCATTACTACAAACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGGCAGTTTTCTACTTCTGCAGTGCCCAAGGCCGACGTCGGCCCATCATCAAGCCCACAGCTAGCGCTGTTAGATCAAACGCATAGCTTGGTTTCAGTTCTGGAACATGTCCTTCATTGTTCATACCTATTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

242

Amino Acids

26.41

Weight (kDa)

6.49

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 132 1.1e-32 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 1 cut(s) 7
AfeI AGCGCT 1 cut(s) 657
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 2 cut(s) 262, 299
AluBI AGCT 6 cut(s) 116, 392, 569, 586, 652, 678
AluI AGCT 6 cut(s) 116, 392, 569, 586, 652, 678
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 539
Aor51HI AGCGCT 1 cut(s) 657
AoxI GGCC 3 cut(s) 55, 621, 631
ApeKI GCWGC 1 cut(s) 566
AspLEI GCGC 2 cut(s) 476, 658
AspS9I GGNCC 3 cut(s) 44, 284, 632
AsuNHI GCTAGC 1 cut(s) 652
AvaII GGWCC 2 cut(s) 44, 284
BaeGI GKGCMC 2 cut(s) 579, 618
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 578
BccI CCATC 2 cut(s) 146, 643
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 2 cut(s) 564, 609
BfoI RGCGCY 2 cut(s) 477, 659
BglII AGATCT 1 cut(s) 275
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 44, 284
BmgT120I GGNCC 3 cut(s) 44, 284, 632
BmiI GGNNCC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 370
BmtI GCTAGC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 381, 413
BpuEI CTTGAG 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 3 cut(s) 47, 537, 618
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 67, 323, 337, 472
BseDI CCNNGG 3 cut(s) 47, 537, 618
BseGI GGATG 4 cut(s) 82, 138, 480, 547
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 4 cut(s) 67, 323, 337, 472
BseSI GKGCMC 2 cut(s) 579, 618
BseXI GCAGC 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 3 cut(s) 57, 623, 633
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 3 cut(s) 57, 623, 633
Bsp1286I GDGCHC 4 cut(s) 69, 170, 579, 618
Bsp143I GATC 5 cut(s) 248, 275, 415, 544, 664
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 1 cut(s) 231
BspANI GGCC 3 cut(s) 57, 623, 633
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 2 cut(s) 568, 613
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 539
BsrI ACTGG 4 cut(s) 67, 323, 337, 472
BssECI CCNNGG 3 cut(s) 47, 537, 618
BssMI GATC 5 cut(s) 248, 275, 415, 544, 664
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 3 cut(s) 47, 537, 618
Bst4CI ACNGT 4 cut(s) 97, 238, 458, 512
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 490, 654
BstDEI CTNAG 1 cut(s) 241
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 82, 138, 480, 547
BstH2I RGCGCY 2 cut(s) 477, 659
BstHHI GCGC 2 cut(s) 476, 658
BstKTI GATC 5 cut(s) 251, 278, 418, 547, 667
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 5 cut(s) 248, 275, 415, 544, 664
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 4 cut(s) 165, 389, 583, 592
BstNSI RCATGY 1 cut(s) 701
BstSFI CTRYAG 2 cut(s) 564, 609
BstSLI GKGCMC 2 cut(s) 579, 618
BstV1I GCAGC 1 cut(s) 578
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 3 cut(s) 57, 623, 633
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 82, 138, 480, 547
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 330, 579, 618
Cac8I GCNNGC 2 cut(s) 490, 654
CfoI GCGC 2 cut(s) 476, 658
Cfr13I GGNCC 3 cut(s) 44, 284, 632
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 6 cut(s) 48, 70, 119, 188, 356, 698
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 241
DpnI GATC 5 cut(s) 250, 277, 417, 546, 666
DpnII GATC 5 cut(s) 248, 275, 415, 544, 664
Eco130I CCWWGG 3 cut(s) 47, 537, 618
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 44, 284
Eco47III AGCGCT 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 555
EcoT14I CCWWGG 3 cut(s) 47, 537, 618
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 3 cut(s) 47, 537, 618
FaeI CATG 6 cut(s) 51, 73, 122, 191, 359, 701
FaqI GGGAC 1 cut(s) 247
FatI CATG 6 cut(s) 47, 69, 118, 187, 355, 697
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 4 cut(s) 89, 125, 467, 554
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 653
GlaI GCGC 2 cut(s) 475, 657
GluI GCNGC 1 cut(s) 567
HaeII RGCGCY 2 cut(s) 477, 659
HaeIII GGCC 3 cut(s) 57, 623, 633
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 476, 658
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 6 cut(s) 51, 73, 122, 191, 359, 701
Hin6I GCGC 2 cut(s) 474, 656
HinP1I GCGC 2 cut(s) 474, 656
HinfI GANTC 2 cut(s) 134, 406
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 181, 248, 411
Hpy188III TCNNGA 4 cut(s) 142, 262, 377, 692
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 629, 632
HpyAV CCTTC 1 cut(s) 713
HpyCH4III ACNGT 4 cut(s) 97, 238, 458, 512
HpyCH4IV ACGT 2 cut(s) 432, 627
HpyCH4V TGCA 3 cut(s) 383, 566, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 389, 583, 592
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 2 cut(s) 432, 627
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 6 cut(s) 51, 73, 122, 191, 359, 701
HspAI GCGC 2 cut(s) 474, 656
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 5 cut(s) 248, 275, 415, 544, 664
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 653
MaeII ACGT 2 cut(s) 432, 627
MaeIII GTNAC 2 cut(s) 325, 335
MalI GATC 5 cut(s) 250, 277, 417, 546, 666
MboI GATC 5 cut(s) 248, 275, 415, 544, 664
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 4 cut(s) 69, 170, 579, 618
MluCI AATT 3 cut(s) 104, 294, 342
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 5 cut(s) 7, 47, 194, 354, 407
MspI CCGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 165, 389, 583, 592
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 248, 275, 415, 544, 664
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 6 cut(s) 51, 73, 122, 191, 359, 701
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 701
PciI ACATGT 1 cut(s) 697
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 1 cut(s) 568
Ple19I CGATCG 1 cut(s) 251
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 44, 284, 632
PstI CTGCAG 2 cut(s) 568, 613
PsuI RGATCY 1 cut(s) 275
PvuI CGATCG 1 cut(s) 251
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 5 cut(s) 248, 275, 415, 544, 664
Sau96I GGNCC 3 cut(s) 44, 284, 632
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 4 cut(s) 69, 170, 579, 618
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 2 cut(s) 564, 609
SinI GGWCC 2 cut(s) 44, 284
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 104, 294, 342
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 653
StyI CCWWGG 3 cut(s) 47, 537, 618
TaaI ACNGT 4 cut(s) 97, 238, 458, 512
TaiI ACGT 2 cut(s) 435, 630
TasI AATT 3 cut(s) 104, 294, 342
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 406
TscAI CASTG 3 cut(s) 330, 579, 618
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 344, 695, 702
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 330, 579, 618
VpaK11BI GGWCC 2 cut(s) 44, 284
XceI RCATGY 1 cut(s) 701
XspI CTAG 1 cut(s) 653
ZraI GACGTC 1 cut(s) 628
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.