FvH4_3g40490

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000704
Physical Location & Seq
Forward (+)
34160819 .. 34163541
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40490.t1

Sequence Viewer

Length: 1449 bp
ATGGCTTTCATTGCAGTGATTTTGGTCACTTTGGTTTCAACTATCTTCCTCTGGAAGATTCTGTTTAAGGGCCGTCGCCGGGAGAGCAAAAATGTCCCGGGAGGTTCTCTAGGGTATCCCTTAATAGGAGAGACATTTAGCTTTCTTCAAGCACAGAAGCAAGATCGAGGTCCTCAATGGCTGGAAGAAAGAACAGCAAAACATGGGCCAGTGTTCAAAACGTGTCTGATGGGTTCGCCGACTGTGGTTGTTATAGGTCAAGCAGGGAACAAGTTTGTGTTTGGTGCTGAAGATGATGTTCTTGCTGCCCAACAACCTCCCACCTTGTCAGCCATTGGAGGCAAGCAGAGTATATTTGAGCTTACAGGATCAAGGTACAGATTGGTGAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAAATGGACGAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAAGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTCGGTATCAAGGATGAGAGTACCAGGGAGGTTTTGTTTGATGATTTTTCATTAGCCTTCAAAGCAGTTTGGTCTCTTCCGATTAACTTTCCCGGCACTGTTTACCGGCAAGGCCTAAAAGCTAGAGCAAGAATTGTGGATTCGATTCTGCCGATACTAAAGGAGAGAAGGGAGGCCATTTCAAAGGGGAAGTTAAGCCCTACAAGTGATGTGTTCTCTAGCTTGGTAGCATTGAGAGATGAAAATCAAGAACCACTTTCTGATGATCTAATCATGGATAACTATGTCACCTTGATGATAGCCAGTCATGACACCACTGCAATTCTTCTTAGCCTTATGATTTGGAAGCTGTCCACAGACTCTGAGCTCTACAAGAAAGTTTTACAAGAACAAATGGAAATTATAAGTAAGAGGGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGAATAATTCCTCCTGTGTTTGGAAGTTTCAGAAAAGCACTCAAAGACACTCAATACGGTGGCTATGACATTCCCAGAGGATGGCAGGTGTTTTGGGTGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCAAGATTTGAGAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCCTTCACACTTGCATTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCGCAACCATTCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTACCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCTATCAAGATCAAACCAAGAATCCCCAAATCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

483

Amino Acids

54.73

Weight (kDa)

9.11

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 456 5.3e-66 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AarI CACCTGC 1 cut(s) 1123
Acc36I ACCTGC 1 cut(s) 1123
AccB7I CCANNNNNTGG 1 cut(s) 1128
AclWI GGATC 2 cut(s) 376, 1193
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 3 cut(s) 377, 577, 1358
AfiI CCNNNNNNNGG 6 cut(s) 79, 125, 1067, 1128, 1259, 1403
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 8 cut(s) 39, 149, 217, 412, 428, 616, 738, 1304
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 9 cut(s) 141, 361, 405, 506, 526, 677, 777, 904, 922
AluI AGCT 9 cut(s) 141, 361, 405, 506, 526, 677, 777, 904, 922
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 3 cut(s) 125, 633, 1412
AlwI GGATC 2 cut(s) 376, 1193
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 6 cut(s) 70, 206, 667, 729, 1146, 1264
ApeKI GCWGC 1 cut(s) 305
AseI ATTAAT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 3 cut(s) 70, 170, 206
AsuC2I CCSGG 4 cut(s) 80, 98, 99, 648
AsuHPI GGTGA 5 cut(s) 397, 412, 505, 835, 1342
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 1362
BaeI ACNNNNGTAYC 2 cut(s) 1340, 1373
BanII GRGCYC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 292
BccI CCATC 4 cut(s) 223, 1122, 1210, 1405
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 580
BciVI GTATCC 1 cut(s) 126
BcnI CCSGG 4 cut(s) 80, 98, 99, 648
BcoDI GTCTC 3 cut(s) 125, 633, 1412
BfaI CTAG 4 cut(s) 110, 678, 774, 1296
BfuAI ACCTGC 1 cut(s) 1123
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 5 cut(s) 80, 98, 99, 580, 648
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 70, 170, 206
BmrFI CCNGG 5 cut(s) 80, 98, 99, 580, 648
BmsI GCATC 2 cut(s) 551, 558
BpiI GAAGAC 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 80, 98, 99, 648
BsaBI GATNNNNATC 1 cut(s) 798
BsaI GGTCTC 2 cut(s) 633, 1412
BsaJI CCNNGG 3 cut(s) 97, 579, 1401
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 575, 605
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 125, 1067, 1128, 1259, 1403
Bse118I RCCGGY 1 cut(s) 660
Bse1I ACTGG 2 cut(s) 209, 858
Bse21I CCTNAGG 1 cut(s) 1362
Bse3DI GCAATG 2 cut(s) 9, 402
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 3 cut(s) 97, 579, 1401
BseGI GGATG 4 cut(s) 549, 574, 1133, 1397
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 6 cut(s) 79, 125, 1067, 1128, 1259, 1403
BseMI GCAATG 2 cut(s) 9, 402
BseMII CTCAG 2 cut(s) 909, 1353
BseNI ACTGG 2 cut(s) 209, 858
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 6 cut(s) 72, 208, 669, 731, 1148, 1266
BsiHKAI GWGCWC 1 cut(s) 924
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 4 cut(s) 79, 98, 648, 661
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 6 cut(s) 79, 125, 1067, 1128, 1259, 1403
BsmAI GTCTC 3 cut(s) 125, 633, 1412
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 6 cut(s) 72, 208, 669, 731, 1148, 1266
Bso31I GGTCTC 2 cut(s) 633, 1412
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 5 cut(s) 163, 368, 820, 1198, 1419
Bsp19I CCATGG 1 cut(s) 1401
BspANI GGCC 6 cut(s) 72, 208, 669, 731, 1148, 1266
BspCNI CTCAG 2 cut(s) 910, 1354
BspHI TCATGA 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 1123
BspPI GGATC 2 cut(s) 376, 1193
BspTNI GGTCTC 2 cut(s) 633, 1412
BsrDI GCAATG 2 cut(s) 9, 402
BsrFI RCCGGY 1 cut(s) 660
BsrI ACTGG 2 cut(s) 209, 858
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 3 cut(s) 97, 579, 1401
BssMI GATC 5 cut(s) 163, 368, 820, 1198, 1419
BssT1I CCWWGG 1 cut(s) 1401
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 3 cut(s) 244, 655, 1106
Bst6I CTCTTC 1 cut(s) 636
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 884, 918, 1362
BstDSI CCRYGG 1 cut(s) 1401
BstEII GGTNACC 1 cut(s) 511
BstF5I GGATG 4 cut(s) 549, 574, 1133, 1397
BstKTI GATC 5 cut(s) 166, 371, 823, 1201, 1422
BstMAI GTCTC 3 cut(s) 125, 633, 1412
BstMBI GATC 5 cut(s) 163, 368, 820, 1198, 1419
BstMWI GCNNNNNNNGC 4 cut(s) 11, 84, 617, 994
BstNI CCWGG 1 cut(s) 580
BstPI GGTNACC 1 cut(s) 511
BstSCI CCNGG 5 cut(s) 78, 96, 97, 578, 646
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 416
Bsu36I CCTNAGG 1 cut(s) 1362
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 6 cut(s) 72, 208, 669, 731, 1148, 1266
BtgI CCRYGG 1 cut(s) 1401
BtsCI GGATG 4 cut(s) 549, 574, 1133, 1397
BtsI GCAGTG 2 cut(s) 21, 870
BtsIMutI CAGTG 4 cut(s) 21, 216, 651, 870
BveI ACCTGC 1 cut(s) 1123
Cac8I GCNNGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 3 cut(s) 70, 170, 206
Cfr9I CCCGGG 1 cut(s) 97
Csp6I GTAC 3 cut(s) 376, 576, 1357
CspCI CAANNNNNGTGG 4 cut(s) 672, 707, 1177, 1212
CviAII CATG 9 cut(s) 203, 466, 517, 829, 863, 993, 1023, 1162, 1402
CviQI GTAC 3 cut(s) 376, 576, 1357
DdeI CTNAG 3 cut(s) 884, 918, 1362
DpnI GATC 5 cut(s) 165, 370, 822, 1200, 1421
DpnII GATC 5 cut(s) 163, 368, 820, 1198, 1419
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Ecl136II GAGCTC 1 cut(s) 922
Eco130I CCWWGG 1 cut(s) 1401
Eco147I AGGCCT 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 2 cut(s) 633, 1412
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 1362
Eco88I CYCGRG 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 1401
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 1401
FaeI CATG 9 cut(s) 206, 469, 520, 832, 866, 996, 1026, 1165, 1405
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 1 cut(s) 80
FatI CATG 9 cut(s) 202, 465, 516, 828, 862, 992, 1022, 1161, 1401
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 4 cut(s) 536, 581, 1140, 1384
FriOI GRGCYC 1 cut(s) 924
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 4 cut(s) 110, 678, 774, 1296
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 6 cut(s) 72, 208, 669, 731, 1148, 1266
HapII CCGG 4 cut(s) 79, 98, 648, 661
Hin1II CATG 9 cut(s) 206, 469, 520, 832, 866, 996, 1026, 1165, 1405
HincII GTYRAC 1 cut(s) 1382
HindII GTYRAC 1 cut(s) 1382
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 58, 695, 700, 914, 1431
HpaII CCGG 4 cut(s) 79, 98, 648, 661
HphI GGTGA 5 cut(s) 397, 412, 505, 835, 1342
Hpy166II GTNNAC 4 cut(s) 658, 909, 1357, 1382
Hpy188I TCNGA 5 cut(s) 228, 636, 817, 919, 1079
Hpy188III TCNNGA 7 cut(s) 52, 409, 460, 803, 863, 1206, 1417
Hpy8I GTNNAC 4 cut(s) 658, 909, 1357, 1382
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 382, 622, 717, 1277
HpyCH4III ACNGT 3 cut(s) 244, 655, 1106
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 14, 875, 1034, 1278
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 84, 617, 994
HpyF3I CTNAG 3 cut(s) 884, 918, 1362
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 9 cut(s) 206, 469, 520, 832, 866, 996, 1026, 1165, 1405
Kzo9I GATC 5 cut(s) 163, 368, 820, 1198, 1419
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 551, 558
MaeI CTAG 4 cut(s) 110, 678, 774, 1296
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 6 cut(s) 25, 468, 511, 841, 1330, 1347
MalI GATC 5 cut(s) 165, 370, 822, 1200, 1421
MboI GATC 5 cut(s) 163, 368, 820, 1198, 1419
MhlI GDGCHC 1 cut(s) 924
MluCI AATT 7 cut(s) 452, 687, 876, 954, 1053, 1230, 1324
MlyI GAGTC 1 cut(s) 908
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 6 cut(s) 66, 122, 455, 534, 639, 749
MslI CAYNNNNRTG 2 cut(s) 14, 848
MspI CCGG 4 cut(s) 79, 98, 648, 661
MspR9I CCNGG 5 cut(s) 80, 98, 99, 580, 648
MvaI CCWGG 1 cut(s) 580
MwoI GCNNNNNNNGC 4 cut(s) 11, 84, 617, 994
NciI CCSGG 4 cut(s) 80, 98, 99, 648
NcoI CCATGG 1 cut(s) 1401
NdeII GATC 5 cut(s) 163, 368, 820, 1198, 1419
NlaIII CATG 9 cut(s) 206, 469, 520, 832, 866, 996, 1026, 1165, 1405
NmuCI GTSAC 5 cut(s) 25, 511, 841, 1330, 1347
PagI TCATGA 1 cut(s) 862
PaqCI CACCTGC 1 cut(s) 1123
PceI AGGCCT 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 4 cut(s) 58, 695, 700, 1431
PflMI CCANNNNNTGG 1 cut(s) 1128
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 455
PsiI TTATAA 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 578
PspEI GGTNACC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 578
PspPI GGNCC 3 cut(s) 70, 170, 206
PspPPI RGGWCCY 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 377, 577, 1358
RsaNI GTAC 3 cut(s) 376, 576, 1357
RseI CAYNNNNRTG 2 cut(s) 14, 848
SacI GAGCTC 1 cut(s) 924
SaqAI TTAA 6 cut(s) 66, 122, 455, 534, 639, 749
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 5 cut(s) 163, 368, 820, 1198, 1419
Sau96I GGNCC 3 cut(s) 70, 170, 206
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 5 cut(s) 80, 98, 99, 580, 648
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 2 cut(s) 551, 558
SinI GGWCC 1 cut(s) 170
SmaI CCCGGG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 14, 848
Sse9I AATT 7 cut(s) 452, 687, 876, 954, 1053, 1230, 1324
SseBI AGGCCT 1 cut(s) 669
SspMI CTAG 4 cut(s) 110, 678, 774, 1296
SstI GAGCTC 1 cut(s) 924
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 5 cut(s) 78, 96, 97, 578, 646
StyI CCWWGG 1 cut(s) 1401
TaaI ACNGT 3 cut(s) 244, 655, 1106
TaiI ACGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 166, 698
TasI AATT 7 cut(s) 452, 687, 876, 954, 1053, 1230, 1324
TfiI GAWTC 4 cut(s) 58, 695, 700, 1431
Tru1I TTAA 6 cut(s) 66, 122, 455, 534, 639, 749
Tru9I TTAA 6 cut(s) 66, 122, 455, 534, 639, 749
TscAI CASTG 4 cut(s) 21, 216, 658, 877
TseFI GTSAC 5 cut(s) 25, 511, 841, 1330, 1347
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 5 cut(s) 25, 511, 841, 1330, 1347
TspDTI ATGAA 5 cut(s) 533, 594, 810, 1028, 1178
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 4 cut(s) 21, 216, 658, 877
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 2 cut(s) 505, 1324
XmaI CCCGGG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 4 cut(s) 110, 678, 774, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.