Rw5G044470

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000704
Physical Location & Seq
Forward (+)
78159874 .. 78162525
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044470.1

Sequence Viewer

Length: 1221 bp
ATGGGTTCCCCAACTGTGATTGTTATAGGTCAAGCAGGGAACAAGTTTATACTTGGTGCTGAAGATGATGTTCTTGCTGCCAAACAACCTCCCACCTTGTTAGCCGTTGGTGGAAAACAGAATATATTTGAACTTACAGGATCAAGGTACAGGTTGGTAAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCAGGGGGGTCTTGTTTGAGGACTTTTCATTAGCCTTCAAAGCAACTTGGTCTCTTCCTATTAATTTCCCTGGCACTGTTTATCGGCGAGGCCTAAGAGCTAGGGCAAGAATTGTGGATTCGATTTTGCCAATACTAAAAGAGAGAAGGGAGGAAATTTCAAAGGGGAATTTAAGCCCTACAAGTGATGTGTTTTCTAGCTTTCTAGCTTTGAGAGATGAAAACCAAGAACCAGTTTCTGATGATCTGATTATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCACAGACTCTGAGATCTACAAAAAAGTTTTACAAGAACAAATAGACATTATAAGTGAGAGAGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATGATTCCTCCTGTGTTTGGAAGCTTTAGAAAAACACTCAAAGACACTCAATATGGTGGCTATGACATTCCCAAAGGATGGCAGGTGTTTTGGGCGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCGAGATTTGAAAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCATTCACACCTGCCCTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCACAACCATCCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTACCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGAATTCCTAAATTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

406

Amino Acids

46.3

Weight (kDa)

8.61

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 381 6.4e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AarI CACCTGC 2 cut(s) 895, 1055
Acc36I ACCTGC 2 cut(s) 895, 1055
AccB7I CCANNNNNTGG 2 cut(s) 900, 1099
AciI CCGC 1 cut(s) 917
AclWI GGATC 2 cut(s) 148, 965
AcsI RAATTY 4 cut(s) 504, 517, 1203, 1211
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 149, 1130
AfiI CCNNNNNNNGG 5 cut(s) 839, 900, 1031, 1099, 1175
AgsI TTSAA 7 cut(s) 131, 184, 200, 388, 510, 986, 1076
AjnI CCWGG 3 cut(s) 350, 418, 1051
AluBI AGCT 7 cut(s) 177, 298, 449, 549, 557, 676, 846
AluI AGCT 7 cut(s) 177, 298, 449, 549, 557, 676, 846
Alw26I GTCTC 2 cut(s) 405, 1184
AlwI GGATC 2 cut(s) 148, 965
AlwNI CAGNNNCTG 2 cut(s) 587, 689
AoxI GGCC 2 cut(s) 439, 918
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 4 cut(s) 504, 517, 1203, 1211
AseI ATTAAT 2 cut(s) 227, 411
Asp700I GAANNNNTTC 1 cut(s) 195
AsuHPI GGTGA 4 cut(s) 184, 277, 607, 1114
AxyI CCTNAGG 1 cut(s) 1134
BaeI ACNNNNGTAYC 2 cut(s) 1112, 1145
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 64
BccI CCATC 5 cut(s) 211, 894, 982, 1097, 1177
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 3 cut(s) 352, 420, 1053
BcoDI GTCTC 2 cut(s) 405, 1184
BfaI CTAG 4 cut(s) 450, 546, 554, 1068
BfuAI ACCTGC 2 cut(s) 895, 1055
BglII AGATCT 1 cut(s) 693
BisI GCNGC 2 cut(s) 78, 918
BlsI GCNGC 2 cut(s) 79, 919
Bme1390I CCNGG 3 cut(s) 352, 420, 1053
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 352, 420, 1053
BmsI GCATC 2 cut(s) 323, 330
BpiI GAAGAC 1 cut(s) 188
BsaI GGTCTC 2 cut(s) 405, 1184
BsaJI CCNNGG 4 cut(s) 351, 418, 1051, 1173
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 5 cut(s) 839, 900, 1031, 1099, 1175
Bse1I ACTGG 2 cut(s) 581, 630
Bse21I CCTNAGG 1 cut(s) 1134
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 352, 420, 1053
BseDI CCNNGG 4 cut(s) 351, 418, 1051, 1173
BseGI GGATG 6 cut(s) 321, 346, 828, 905, 1089, 1169
BseLI CCNNNNNNNGG 5 cut(s) 839, 900, 1031, 1099, 1175
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 681, 1125
BseNI ACTGG 2 cut(s) 581, 630
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 2 cut(s) 441, 920
BslI CCNNNNNNNGG 5 cut(s) 839, 900, 1031, 1099, 1175
BsmAI GTCTC 2 cut(s) 405, 1184
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 2 cut(s) 441, 920
Bso31I GGTCTC 2 cut(s) 405, 1184
Bsp143I GATC 5 cut(s) 140, 592, 693, 970, 1191
Bsp19I CCATGG 1 cut(s) 1173
BspACI CCGC 1 cut(s) 917
BspANI GGCC 2 cut(s) 441, 920
BspCNI CTCAG 2 cut(s) 682, 1126
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 2 cut(s) 895, 1055
BspPI GGATC 2 cut(s) 148, 965
BspTNI GGTCTC 2 cut(s) 405, 1184
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 2 cut(s) 581, 630
BssECI CCNNGG 4 cut(s) 351, 418, 1051, 1173
BssMI GATC 5 cut(s) 140, 592, 693, 970, 1191
BssT1I CCWWGG 1 cut(s) 1173
Bst2UI CCWGG 3 cut(s) 352, 420, 1053
Bst4CI ACNGT 2 cut(s) 16, 427
Bst6I CTCTTC 1 cut(s) 408
BstDEI CTNAG 4 cut(s) 443, 656, 690, 1134
BstDSI CCRYGG 1 cut(s) 1173
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 6 cut(s) 321, 346, 828, 905, 1089, 1169
BstKTI GATC 5 cut(s) 143, 595, 696, 973, 1194
BstMAI GTCTC 2 cut(s) 405, 1184
BstMBI GATC 5 cut(s) 140, 592, 693, 970, 1191
BstMWI GCNNNNNNNGC 2 cut(s) 389, 766
BstNI CCWGG 3 cut(s) 352, 420, 1053
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 3 cut(s) 350, 418, 1051
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
Bsu36I CCTNAGG 1 cut(s) 1134
BsuRI GGCC 2 cut(s) 441, 920
BtgI CCRYGG 1 cut(s) 1173
BtsCI GGATG 6 cut(s) 321, 346, 828, 905, 1089, 1169
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 2 cut(s) 895, 1055
CaiI CAGNNNCTG 2 cut(s) 587, 689
CciI TCATGA 1 cut(s) 634
Csp6I GTAC 2 cut(s) 148, 1129
CspCI CAANNNNNGTGG 4 cut(s) 444, 479, 949, 984
CviAII CATG 7 cut(s) 238, 289, 635, 765, 795, 934, 1174
CviQI GTAC 2 cut(s) 148, 1129
DdeI CTNAG 4 cut(s) 443, 656, 690, 1134
DpnI GATC 5 cut(s) 142, 594, 695, 972, 1193
DpnII GATC 5 cut(s) 140, 592, 693, 970, 1191
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 1173
Eco147I AGGCCT 1 cut(s) 441
Eco31I GGTCTC 2 cut(s) 405, 1184
Eco57I CTGAAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 1134
Eco91I GGTNACC 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 1203
EcoRII CCWGG 3 cut(s) 350, 418, 1051
EcoT14I CCWWGG 1 cut(s) 1173
ErhI CCWWGG 1 cut(s) 1173
FaeI CATG 7 cut(s) 241, 292, 638, 768, 798, 937, 1177
FatI CATG 7 cut(s) 237, 288, 634, 764, 794, 933, 1173
Fnu4HI GCNGC 2 cut(s) 78, 918
FokI GGATG 6 cut(s) 308, 353, 835, 912, 1076, 1156
Fsp4HI GCNGC 2 cut(s) 78, 918
FspBI CTAG 4 cut(s) 450, 546, 554, 1068
GluI GCNGC 2 cut(s) 78, 918
HaeIII GGCC 2 cut(s) 441, 920
Hin1II CATG 7 cut(s) 241, 292, 638, 768, 798, 937, 1177
HincII GTYRAC 1 cut(s) 1154
HindII GTYRAC 1 cut(s) 1154
HindIII AAGCTT 2 cut(s) 296, 844
HinfI GANTC 3 cut(s) 467, 686, 826
HphI GGTGA 4 cut(s) 184, 277, 607, 1114
Hpy166II GTNNAC 3 cut(s) 681, 1129, 1154
Hpy188I TCNGA 3 cut(s) 589, 597, 691
Hpy188III TCNNGA 5 cut(s) 181, 232, 635, 978, 1189
Hpy8I GTNNAC 3 cut(s) 681, 1129, 1154
HpyAV CCTTC 2 cut(s) 394, 489
HpyCH4III ACNGT 2 cut(s) 16, 427
HpyCH4V TGCA 1 cut(s) 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 766
HpyF3I CTNAG 4 cut(s) 443, 656, 690, 1134
Hsp92II CATG 7 cut(s) 241, 292, 638, 768, 798, 937, 1177
Kzo9I GATC 5 cut(s) 140, 592, 693, 970, 1191
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 323, 330
MaeI CTAG 4 cut(s) 450, 546, 554, 1068
MaeIII GTNAC 5 cut(s) 240, 283, 613, 1102, 1119
MalI GATC 5 cut(s) 142, 594, 695, 972, 1193
MboI GATC 5 cut(s) 140, 592, 693, 970, 1191
MboII GAAGA 7 cut(s) 74, 188, 304, 395, 644, 761, 764
MflI RGATCY 1 cut(s) 693
MlyI GAGTC 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 4 cut(s) 227, 306, 411, 521
MslI CAYNNNNRTG 1 cut(s) 620
MspR9I CCNGG 3 cut(s) 352, 420, 1053
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 3 cut(s) 352, 420, 1053
MwoI GCNNNNNNNGC 2 cut(s) 389, 766
NcoI CCATGG 1 cut(s) 1173
NdeII GATC 5 cut(s) 140, 592, 693, 970, 1191
NlaIII CATG 7 cut(s) 241, 292, 638, 768, 798, 937, 1177
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 4 cut(s) 283, 613, 1102, 1119
PagI TCATGA 1 cut(s) 634
PaqCI CACCTGC 2 cut(s) 895, 1055
PceI AGGCCT 1 cut(s) 441
PctI GAATGC 1 cut(s) 1038
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 467, 826
PflMI CCANNNNNTGG 2 cut(s) 900, 1099
PkrI GCNGC 2 cut(s) 79, 919
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PshBI ATTAAT 2 cut(s) 227, 411
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 350, 418, 1051
PspEI GGTNACC 1 cut(s) 283
PspGI CCWGG 3 cut(s) 350, 418, 1051
PspN4I GGNNCC 1 cut(s) 7
PstNI CAGNNNCTG 2 cut(s) 587, 689
PsuI RGATCY 1 cut(s) 693
RsaI GTAC 2 cut(s) 149, 1130
RsaNI GTAC 2 cut(s) 148, 1129
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 4 cut(s) 227, 306, 411, 521
SatI GCNGC 2 cut(s) 78, 918
Sau3AI GATC 5 cut(s) 140, 592, 693, 970, 1191
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 3 cut(s) 352, 420, 1053
SfaNI GCATC 2 cut(s) 323, 330
SmiMI CAYNNNNRTG 1 cut(s) 620
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 1 cut(s) 917
SspMI CTAG 4 cut(s) 450, 546, 554, 1068
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 3 cut(s) 350, 418, 1051
StyI CCWWGG 1 cut(s) 1173
TaaI ACNGT 2 cut(s) 16, 427
TaqI TCGA 2 cut(s) 470, 977
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 2 cut(s) 467, 826
Tru1I TTAA 4 cut(s) 227, 306, 411, 521
Tru9I TTAA 4 cut(s) 227, 306, 411, 521
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 4 cut(s) 283, 613, 1102, 1119
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 4 cut(s) 283, 613, 1102, 1119
TspDTI ATGAA 5 cut(s) 305, 366, 582, 800, 950
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 2 cut(s) 900, 1099
VspI ATTAAT 2 cut(s) 227, 411
XapI RAATTY 4 cut(s) 504, 517, 1203, 1211
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 1096
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 4 cut(s) 450, 546, 554, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.