Rh5DG511400

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000704
Physical Location & Seq
Forward (+)
79851588 .. 79855148
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG511400.1

Sequence Viewer

Length: 1446 bp
ATGGCTTTCATTGCAGTAATTGCAGTCACTTTGGTTGTAGCCTTCCTCCTTTCGAAGATTCTGTCCAAGGGTCGCAGAGAGAGCAAAAATCTCCCGGGAGGTTCTCTGGGGTATCCCTTAATAGGAGAGACATTAAGCTTTCTTCAAGCACAGAAGCAAGATCGAGGTCCTCAATGGCTGGAAGAAAGAACAGCAAAACATGGGCCAGTGTTCAAAACGTGTTTGATGGGTTCCCCAACTGTGATTGTTTTAGGTCAAGCAGGGAACAAGTTTATACTTGGTGCTGAAGATGATGTTCTTGCTGCCAAACAACCTCCCACCTTGTTAGCCATTGGAGGAAAACAGAGTATATTTGAACTTACAGGATCAAGGTACAGGTTTGTAAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCAGGGGGGTCTTGTTTGAGGACTTTTCATTAGCCTTCAAAGCAACTTGGTCTCTTCCTATTAATTTCCCTGGCACTGTTTATCGGCGAGGCCTAAGAGCTAGGGCAAGAATTGTGGATTCGATTTTGCCAATACTAAAGGAGAGAAGGGAGGAAATTTCAAAGGGGAATTTAAGCCCTACAAGTGATGTGTTTTCTAGCTTTCTAGCTTTGAGAGATGAAAACCAAGAACCAGTTTCTGATGATCTGATTATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCACAGACTCTGAGATCTACAAAAAAGTTTTACAAGAACAAATAGACATTATAAGTAAGAGAGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATGATTCCTCCTGTGTTTGGAAGCTTTAGAAAAACACTCAAAGACACTCAATATGGTGGCTACGACATTCCCAAAGGATGGCAGGTGTTTTGGGCGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCGAGATTTGAAAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCATTCACACTTGCCCTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCACAACCATCCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTACCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGAATTCCTAAATTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

481

Amino Acids

54.53

Weight (kDa)

9.24

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 456 1.3e-65 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AarI CACCTGC 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1120
AccB7I CCANNNNNTGG 2 cut(s) 1125, 1324
AciI CCGC 1 cut(s) 1142
AclWI GGATC 2 cut(s) 373, 1190
AcsI RAATTY 4 cut(s) 729, 742, 1428, 1436
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 374, 1355
AfiI CCNNNNNNNGG 6 cut(s) 122, 1064, 1125, 1256, 1324, 1400
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 9 cut(s) 146, 214, 356, 409, 425, 613, 735, 1211, 1301
AjnI CCWGG 3 cut(s) 575, 643, 1276
AluBI AGCT 8 cut(s) 138, 402, 523, 674, 774, 782, 901, 1071
AluI AGCT 8 cut(s) 138, 402, 523, 674, 774, 782, 901, 1071
Alw26I GTCTC 3 cut(s) 122, 630, 1409
AlwI GGATC 2 cut(s) 373, 1190
AlwNI CAGNNNCTG 2 cut(s) 812, 914
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 3 cut(s) 203, 664, 1143
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 4 cut(s) 729, 742, 1428, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AseI ATTAAT 2 cut(s) 452, 636
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 167, 203
AsuC2I CCSGG 2 cut(s) 95, 96
AsuHPI GGTGA 4 cut(s) 409, 502, 832, 1339
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 1359
BaeI ACNNNNGTAYC 2 cut(s) 1337, 1370
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 289
BccI CCATC 6 cut(s) 220, 436, 1119, 1207, 1322, 1402
BciT130I CCWGG 3 cut(s) 577, 645, 1278
BciVI GTATCC 1 cut(s) 123
BcnI CCSGG 2 cut(s) 95, 96
BcoDI GTCTC 3 cut(s) 122, 630, 1409
BfaI CTAG 4 cut(s) 675, 771, 779, 1293
BfuAI ACCTGC 1 cut(s) 1120
BfuI GTATCC 1 cut(s) 123
BglII AGATCT 1 cut(s) 918
BisI GCNGC 2 cut(s) 303, 1143
BlsI GCNGC 2 cut(s) 304, 1144
Bme1390I CCNGG 5 cut(s) 95, 96, 577, 645, 1278
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 167, 203
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 5 cut(s) 95, 96, 577, 645, 1278
BmsI GCATC 2 cut(s) 548, 555
BpiI GAAGAC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 95, 96
BsaI GGTCTC 2 cut(s) 630, 1409
BsaJI CCNNGG 6 cut(s) 66, 94, 576, 643, 1276, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 1064, 1125, 1256, 1324, 1400
Bse1I ACTGG 3 cut(s) 206, 806, 855
Bse21I CCTNAGG 1 cut(s) 1359
Bse3DI GCAATG 2 cut(s) 9, 399
BseBI CCWGG 3 cut(s) 577, 645, 1278
BseDI CCNNGG 6 cut(s) 66, 94, 576, 643, 1276, 1398
BseGI GGATG 6 cut(s) 546, 571, 1053, 1130, 1314, 1394
BseLI CCNNNNNNNGG 6 cut(s) 122, 1064, 1125, 1256, 1324, 1400
BseMI GCAATG 2 cut(s) 9, 399
BseMII CTCAG 2 cut(s) 906, 1350
BseNI ACTGG 3 cut(s) 206, 806, 855
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 3 cut(s) 205, 666, 1145
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 6 cut(s) 122, 1064, 1125, 1256, 1324, 1400
BsmAI GTCTC 3 cut(s) 122, 630, 1409
BsmI GAATGC 1 cut(s) 1263
BsnI GGCC 3 cut(s) 205, 666, 1145
Bso31I GGTCTC 2 cut(s) 630, 1409
BsoBI CYCGRG 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
Bsp19I CCATGG 1 cut(s) 1398
BspACI CCGC 1 cut(s) 1142
BspANI GGCC 3 cut(s) 205, 666, 1145
BspCNI CTCAG 2 cut(s) 907, 1351
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 1120
BspPI GGATC 2 cut(s) 373, 1190
BspT104I TTCGAA 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 630, 1409
BsrDI GCAATG 2 cut(s) 9, 399
BsrI ACTGG 3 cut(s) 206, 806, 855
BssECI CCNNGG 6 cut(s) 66, 94, 576, 643, 1276, 1398
BssMI GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
BssT1I CCWWGG 2 cut(s) 66, 1398
Bst2UI CCWGG 3 cut(s) 577, 645, 1278
Bst4CI ACNGT 2 cut(s) 241, 652
Bst6I CTCTTC 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 4 cut(s) 668, 881, 915, 1359
BstDSI CCRYGG 1 cut(s) 1398
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 6 cut(s) 546, 571, 1053, 1130, 1314, 1394
BstKTI GATC 6 cut(s) 163, 368, 820, 921, 1198, 1419
BstMAI GTCTC 3 cut(s) 122, 630, 1409
BstMBI GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 81, 614, 991
BstNI CCWGG 3 cut(s) 577, 645, 1278
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 5 cut(s) 93, 94, 575, 643, 1276
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
Bsu36I CCTNAGG 1 cut(s) 1359
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 3 cut(s) 205, 666, 1145
BtgI CCRYGG 1 cut(s) 1398
BtsCI GGATG 6 cut(s) 546, 571, 1053, 1130, 1314, 1394
BtsIMutI CAGTG 2 cut(s) 213, 648
BveI ACCTGC 1 cut(s) 1120
CaiI CAGNNNCTG 2 cut(s) 812, 914
CciI TCATGA 1 cut(s) 859
Cfr13I GGNCC 2 cut(s) 167, 203
Cfr9I CCCGGG 1 cut(s) 94
Csp6I GTAC 2 cut(s) 373, 1354
CspCI CAANNNNNGTGG 4 cut(s) 669, 704, 1174, 1209
CviAII CATG 8 cut(s) 200, 463, 514, 860, 990, 1020, 1159, 1399
CviQI GTAC 2 cut(s) 373, 1354
DdeI CTNAG 4 cut(s) 668, 881, 915, 1359
DpnI GATC 6 cut(s) 162, 367, 819, 920, 1197, 1418
DpnII GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 66, 1398
Eco147I AGGCCT 1 cut(s) 666
Eco31I GGTCTC 2 cut(s) 630, 1409
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 1359
Eco88I CYCGRG 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 1428
EcoRII CCWGG 3 cut(s) 575, 643, 1276
EcoT14I CCWWGG 2 cut(s) 66, 1398
ErhI CCWWGG 2 cut(s) 66, 1398
FaeI CATG 8 cut(s) 203, 466, 517, 863, 993, 1023, 1162, 1402
FatI CATG 8 cut(s) 199, 462, 513, 859, 989, 1019, 1158, 1398
Fnu4HI GCNGC 2 cut(s) 303, 1143
FokI GGATG 6 cut(s) 533, 578, 1060, 1137, 1301, 1381
Fsp4HI GCNGC 2 cut(s) 303, 1143
FspBI CTAG 4 cut(s) 675, 771, 779, 1293
GluI GCNGC 2 cut(s) 303, 1143
HaeIII GGCC 3 cut(s) 205, 666, 1145
HapII CCGG 1 cut(s) 95
Hin1II CATG 8 cut(s) 203, 466, 517, 863, 993, 1023, 1162, 1402
HincII GTYRAC 1 cut(s) 1379
HindII GTYRAC 1 cut(s) 1379
HindIII AAGCTT 3 cut(s) 136, 521, 1069
HinfI GANTC 4 cut(s) 58, 692, 911, 1051
HpaII CCGG 1 cut(s) 95
HphI GGTGA 4 cut(s) 409, 502, 832, 1339
Hpy166II GTNNAC 3 cut(s) 906, 1354, 1379
Hpy188I TCNGA 3 cut(s) 814, 822, 916
Hpy188III TCNNGA 5 cut(s) 406, 457, 860, 1203, 1414
Hpy8I GTNNAC 3 cut(s) 906, 1354, 1379
HpyAV CCTTC 3 cut(s) 52, 619, 714
HpyCH4III ACNGT 2 cut(s) 241, 652
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 14, 23, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 81, 614, 991
HpyF3I CTNAG 4 cut(s) 668, 881, 915, 1359
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 8 cut(s) 203, 466, 517, 863, 993, 1023, 1162, 1402
Kzo9I GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 548, 555
MaeI CTAG 4 cut(s) 675, 771, 779, 1293
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 6 cut(s) 25, 465, 508, 838, 1327, 1344
MalI GATC 6 cut(s) 162, 367, 819, 920, 1197, 1418
MboI GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
MflI RGATCY 1 cut(s) 918
MlyI GAGTC 1 cut(s) 905
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
MslI CAYNNNNRTG 1 cut(s) 845
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 5 cut(s) 95, 96, 577, 645, 1278
Mva1269I GAATGC 1 cut(s) 1263
MvaI CCWGG 3 cut(s) 577, 645, 1278
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 81, 614, 991
NciI CCSGG 2 cut(s) 95, 96
NcoI CCATGG 1 cut(s) 1398
NdeII GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
NlaIII CATG 8 cut(s) 203, 466, 517, 863, 993, 1023, 1162, 1402
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 5 cut(s) 25, 508, 838, 1327, 1344
NspV TTCGAA 1 cut(s) 53
PagI TCATGA 1 cut(s) 859
PaqCI CACCTGC 1 cut(s) 1120
PceI AGGCCT 1 cut(s) 666
PctI GAATGC 1 cut(s) 1263
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 58, 692, 1051
PflMI CCANNNNNTGG 2 cut(s) 1125, 1324
PkrI GCNGC 2 cut(s) 304, 1144
PleI GAGTC 1 cut(s) 905
PpsI GAGTC 1 cut(s) 905
PpuMI RGGWCCY 1 cut(s) 167
PshBI ATTAAT 2 cut(s) 452, 636
PsiI TTATAA 1 cut(s) 956
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 3 cut(s) 575, 643, 1276
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 3 cut(s) 575, 643, 1276
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 167, 203
PspPPI RGGWCCY 1 cut(s) 167
PstNI CAGNNNCTG 2 cut(s) 812, 914
PsuI RGATCY 1 cut(s) 918
RsaI GTAC 2 cut(s) 374, 1355
RsaNI GTAC 2 cut(s) 373, 1354
RseI CAYNNNNRTG 1 cut(s) 845
SaqAI TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
SatI GCNGC 2 cut(s) 303, 1143
Sau3AI GATC 6 cut(s) 160, 365, 817, 918, 1195, 1416
Sau96I GGNCC 2 cut(s) 167, 203
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 5 cut(s) 95, 96, 577, 645, 1278
SfaNI GCATC 2 cut(s) 548, 555
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 845
SseBI AGGCCT 1 cut(s) 666
SsiI CCGC 1 cut(s) 1142
SspMI CTAG 4 cut(s) 675, 771, 779, 1293
StuI AGGCCT 1 cut(s) 666
StyD4I CCNGG 5 cut(s) 93, 94, 575, 643, 1276
StyI CCWWGG 2 cut(s) 66, 1398
TaaI ACNGT 2 cut(s) 241, 652
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 53, 163, 695, 1202
TauI GCSGC 1 cut(s) 1145
TfiI GAWTC 3 cut(s) 58, 692, 1051
Tru1I TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
Tru9I TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
TscAI CASTG 2 cut(s) 213, 655
TseFI GTSAC 5 cut(s) 25, 508, 838, 1327, 1344
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 5 cut(s) 25, 508, 838, 1327, 1344
TspDTI ATGAA 5 cut(s) 530, 591, 807, 1025, 1175
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 2 cut(s) 213, 655
Van91I CCANNNNNTGG 2 cut(s) 1125, 1324
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 2 cut(s) 452, 636
XapI RAATTY 4 cut(s) 729, 742, 1428, 1436
XcmI CCANNNNNNNNNTGG 2 cut(s) 502, 1321
XmaI CCCGGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 675, 771, 779, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.