Rh5CG300800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000704
Physical Location & Seq
Reverse (-)
33130595 .. 33132203
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG300800.1

Sequence Viewer

Length: 1191 bp
ATGATGACTACTCTTTTCACAATTTTCCTCTTCCTCATTCCCTTATACCTTCTCCTAAAGAGCAGAAGAAAATCATCAGAAAGGCTTCCTCCAGGCCCATTAGGACTGCCCCTAATAGGCCAGAGCCTTGATTTTCTCCGAGCGATGCGTGCCAACACTGCAGAGGATTGGCTTGAACAAAGGATCAGAAAGTATGGTCCAGTTTCAAAGCTAAGTCTCTTTGGCAAGCCAACAGTCTTCATCCATGGACAAGCTGCAAACAAGTTTATATTCACCAGTGATGGGAGCACCATTTCAGCCCAACAAACCGAGTCTATTCGTAGGATTTTGGGGGAACGGAGTATATCCGAGTTAAGTGCTGAGGATCACAAACGTGTCAGAAGTGCACTTATGCTATTCTTGAAGCCTGAGTCACTGAAGCAATATGTGTGGAAAATGGATGAAGAAATCAGGAAGCACCTTGAGATGCACTGGCATGGCAAACAACAAGTAACAGTTATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGGAGAGATGAATTTTTGGAGTGTTTTGAAAAGATGATGCAAGGATTGTGGTCAGTGCCGGTCAACTTGCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAAAATGCTCAAAGAACTTATACGCGAAAGGAGGGTACAACTTGATCAAAAAAGGGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGGAATGATGAAGGTAAAGAAGAATTAACAGAGTTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGGCATGATACTTCGGCTATTCTTATTACGTTCCTTTTGCGGATTCTAGCTAATGAACCAGCAGTATGCTGCCCTTCATCAAGATTTTTTCGACGTTTGATGCTTGTTGAGTTTTGGTTTACAGAGCAGGAAGAAATAGCTAGAAGCAAATTGGCAGGAGAATTTTTAACATGGGAAGATCTTGACAAAATGAAATACACATGGAGTGTAGCACTGGAAACTCTGAGAATGATTCCTCCTTCCTTTGGTAGCTTTAGGACAGCTGTCAAAGATATTGAGTTCGGTGGATTCCACATTCCTAAAGGGTGGCAGGTAAGTTCAAATTTTCGCCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

396

Amino Acids

46.01

Weight (kDa)

9.54

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 306 2.3e-28 Cytochrome P450
p450 PF00067 327 - 392 1.8e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1153
AccII CGCG 2 cut(s) 646, 708
AccIII TCCGGA 1 cut(s) 780
AciI CCGC 1 cut(s) 892
AclWI GGATC 2 cut(s) 191, 372
AcsI RAATTY 3 cut(s) 578, 1013, 1174
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 3 cut(s) 116, 282, 1097
AflIII ACRYGT 2 cut(s) 373, 644
AgsI TTSAA 7 cut(s) 176, 207, 403, 557, 596, 683, 1173
AjnI CCWGG 1 cut(s) 91
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 6 cut(s) 211, 254, 902, 992, 1104, 1115
AluI AGCT 6 cut(s) 211, 254, 902, 992, 1104, 1115
Alw21I GWGCWC 3 cut(s) 290, 388, 828
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 2 cut(s) 384, 824
AlwI GGATC 2 cut(s) 191, 372
Aor13HI TCCGGA 1 cut(s) 780
AoxI GGCC 2 cut(s) 94, 118
ApaLI GTGCAC 2 cut(s) 384, 824
ApeKI GCWGC 3 cut(s) 254, 657, 921
ApoI RAATTY 3 cut(s) 578, 1013, 1174
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 95, 197
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 2 cut(s) 388, 828
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 3 cut(s) 290, 388, 828
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 241, 669, 908
BccI CCATC 2 cut(s) 275, 814
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 899, 993
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 1153
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 3 cut(s) 255, 658, 922
BlsI GCNGC 3 cut(s) 256, 659, 923
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 95, 197
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 5 cut(s) 135, 456, 594, 786, 942
BoxI GACNNNNGTC 1 cut(s) 1115
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 2 cut(s) 360, 773
BpuEI CTTGAG 2 cut(s) 482, 647
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 780
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 282, 1097
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 4 cut(s) 200, 276, 476, 1071
BseAI TCCGGA 1 cut(s) 780
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 240, 445, 777
BseLI CCNNNNNNNGG 3 cut(s) 116, 282, 1097
BseMII CTCAG 3 cut(s) 351, 399, 1067
BseNI ACTGG 4 cut(s) 200, 276, 476, 1071
BseSI GKGCMC 2 cut(s) 388, 828
BseXI GCAGC 3 cut(s) 241, 669, 908
Bsh1236I CGCG 2 cut(s) 646, 708
BshFI GGCC 2 cut(s) 96, 120
BsiHKAI GWGCWC 3 cut(s) 290, 388, 828
BsiSI CCGG 2 cut(s) 626, 781
BslI CCNNNNNNNGG 3 cut(s) 116, 282, 1097
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 96, 120
Bsp1286I GDGCHC 3 cut(s) 290, 388, 828
Bsp13I TCCGGA 1 cut(s) 780
Bsp143I GATC 4 cut(s) 183, 364, 727, 1030
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 892
BspANI GGCC 2 cut(s) 96, 120
BspCNI CTCAG 3 cut(s) 352, 400, 1068
BspEI TCCGGA 1 cut(s) 780
BspFNI CGCG 2 cut(s) 646, 708
BspMAI CTGCAG 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 1153
BspPI GGATC 2 cut(s) 191, 372
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 4 cut(s) 200, 276, 476, 1071
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 183, 364, 727, 1030
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 235, 496
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 150, 227, 670
BstDEI CTNAG 5 cut(s) 212, 360, 408, 773, 1076
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 240, 445, 777
BstFNI CGCG 2 cut(s) 646, 708
BstKTI GATC 4 cut(s) 186, 367, 730, 1033
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 183, 364, 727, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 149, 158, 643, 774
BstNI CCWGG 1 cut(s) 93
BstPAI GACNNNNGTC 1 cut(s) 1115
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 2 cut(s) 388, 828
BstUI CGCG 2 cut(s) 646, 708
BstV1I GCAGC 3 cut(s) 241, 669, 908
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 1030
BstYI RGATCY 1 cut(s) 1030
BsuRI GGCC 2 cut(s) 96, 120
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 3 cut(s) 240, 445, 777
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 6 cut(s) 156, 283, 413, 469, 627, 1064
BveI ACCTGC 1 cut(s) 1153
Cac8I GCNNGC 3 cut(s) 150, 227, 670
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 95, 197
Csp6I GTAC 1 cut(s) 719
CspCI CAANNNNNGTGG 4 cut(s) 410, 445, 596, 631
CviAII CATG 7 cut(s) 245, 476, 835, 844, 857, 1023, 1053
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 5 cut(s) 212, 360, 408, 773, 1076
DpnI GATC 4 cut(s) 185, 366, 729, 1032
DpnII GATC 4 cut(s) 183, 364, 727, 1030
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 7 cut(s) 248, 479, 838, 847, 860, 1026, 1056
FatI CATG 7 cut(s) 244, 475, 834, 843, 856, 1022, 1052
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 255, 658, 922
FokI GGATG 3 cut(s) 227, 452, 764
Fsp4HI GCNGC 3 cut(s) 255, 658, 922
FspBI CTAG 2 cut(s) 899, 993
GluI GCNGC 3 cut(s) 255, 658, 922
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 2 cut(s) 96, 120
HapII CCGG 2 cut(s) 626, 781
Hin1II CATG 7 cut(s) 248, 479, 838, 847, 860, 1026, 1056
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 5 cut(s) 311, 410, 895, 1084, 1140
HpaII CCGG 2 cut(s) 626, 781
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 4 cut(s) 386, 631, 826, 972
Hpy188I TCNGA 7 cut(s) 79, 140, 188, 349, 380, 570, 1077
Hpy188III TCNNGA 5 cut(s) 400, 451, 781, 933, 1034
Hpy8I GTNNAC 4 cut(s) 386, 631, 826, 972
Hpy99I CGWCG 1 cut(s) 948
HpyAV CCTTC 5 cut(s) 59, 649, 785, 936, 1101
HpyCH4III ACNGT 2 cut(s) 235, 496
HpyCH4IV ACGT 3 cut(s) 373, 881, 946
HpyCH4V TGCA 7 cut(s) 161, 257, 386, 469, 607, 826, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 158, 643, 774
HpyF3I CTNAG 5 cut(s) 212, 360, 408, 773, 1076
HpySE526I ACGT 3 cut(s) 373, 881, 946
Hsp92II CATG 7 cut(s) 248, 479, 838, 847, 860, 1026, 1056
Kpn2I TCCGGA 1 cut(s) 780
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 4 cut(s) 183, 364, 727, 1030
LmnI GCTCC 1 cut(s) 285
Lsp1109I GCAGC 3 cut(s) 241, 669, 908
LweI GCATC 5 cut(s) 135, 456, 594, 786, 942
MaeI CTAG 2 cut(s) 899, 993
MaeII ACGT 3 cut(s) 373, 881, 946
MaeIII GTNAC 3 cut(s) 411, 490, 647
MalI GATC 4 cut(s) 185, 366, 729, 1032
MboI GATC 4 cut(s) 183, 364, 727, 1030
MboII GAAGA 8 cut(s) 22, 78, 229, 455, 523, 812, 995, 1040
MflI RGATCY 1 cut(s) 1030
MhlI GDGCHC 3 cut(s) 290, 388, 828
MluCI AATT 6 cut(s) 21, 578, 803, 1001, 1013, 1174
MluI ACGCGT 1 cut(s) 644
MlyI GAGTC 2 cut(s) 320, 419
MmeI TCCRAC 1 cut(s) 795
MroI TCCGGA 1 cut(s) 780
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 4 cut(s) 353, 525, 806, 1019
MslI CAYNNNNRTG 2 cut(s) 372, 474
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 626, 781
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 2 cut(s) 646, 708
MwoI GCNNNNNNNGC 4 cut(s) 149, 158, 643, 774
NcoI CCATGG 1 cut(s) 244
NdeII GATC 4 cut(s) 183, 364, 727, 1030
NlaIII CATG 7 cut(s) 248, 479, 838, 847, 860, 1026, 1056
NmuCI GTSAC 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 895, 1084, 1140
PkrI GCNGC 3 cut(s) 256, 659, 923
PleI GAGTC 2 cut(s) 319, 418
PpsI GAGTC 2 cut(s) 319, 418
PshAI GACNNNNGTC 1 cut(s) 1115
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 2 cut(s) 95, 197
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 1030
PvuII CAGCTG 1 cut(s) 1115
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 2 cut(s) 372, 474
SaqAI TTAA 4 cut(s) 353, 525, 806, 1019
SatI GCNGC 3 cut(s) 255, 658, 922
Sau3AI GATC 4 cut(s) 183, 364, 727, 1030
Sau96I GGNCC 2 cut(s) 95, 197
SchI GAGTC 2 cut(s) 320, 419
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 3 cut(s) 290, 388, 828
SfaNI GCATC 5 cut(s) 135, 456, 594, 786, 942
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 372, 474
SmlI CTYRAG 2 cut(s) 461, 662
SmoI CTYRAG 2 cut(s) 461, 662
Sse9I AATT 6 cut(s) 21, 578, 803, 1001, 1013, 1174
SsiI CCGC 1 cut(s) 892
SspMI CTAG 2 cut(s) 899, 993
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 235, 496
TaiI ACGT 3 cut(s) 376, 884, 949
TaqI TCGA 1 cut(s) 943
TasI AATT 6 cut(s) 21, 578, 803, 1001, 1013, 1174
TfiI GAWTC 3 cut(s) 895, 1084, 1140
Tru1I TTAA 4 cut(s) 353, 525, 806, 1019
Tru9I TTAA 4 cut(s) 353, 525, 806, 1019
TscAI CASTG 6 cut(s) 163, 283, 420, 476, 627, 1071
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 3 cut(s) 254, 657, 921
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 8 cut(s) 229, 456, 524, 591, 804, 918, 921, 1058
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 6 cut(s) 163, 283, 420, 476, 627, 1071
VneI GTGCAC 2 cut(s) 384, 824
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 3 cut(s) 578, 1013, 1174
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 2 cut(s) 899, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.