Rmu_sc0000533.1_g000009

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
OG0000704
Physical Location & Seq
Forward (+)
34901 .. 35901
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000533.1_g000009.1.cds

Sequence Viewer

Length: 567 bp
atgcgttacaacagcggcctcaaggcaagcaagagggttcaaaacatgctcaaacaacttatacgcgaaaagagggtacaggaagaaatagctagaagcaaattgccgggagaatttttaacatgggaagatcttgccaaaatgaaatacacatggagtatagcactggaaaccctgagaatgattcctccttcctttggtagctttaggacagctgtcaaagatattgagttcggtggattccacattcctaaagggtggcagatattctgggctgctcctatgacccgcatggatgataacatattcccggagccatcgaagtttgttccaagtaggttcgacaagcaagcaacagttccaccctactgctttgtaccatttggagggggacctagaatatgtccaggatatgagtttgccaggatcgaaaccctaattgcaatacaccatatggtaactcaattcacttggaagctatgtgcagacaatcacttcagtagggatctaatgcatgtacctactcaaggactgcccattgaaatcacgcctagaatactactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

188

Amino Acids

21.79

Weight (kDa)

9.48

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 15, 289
AclWI GGATC 2 cut(s) 434, 513
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 481
AfaI GTAC 3 cut(s) 78, 378, 519
AfiI CCNNNNNNNGG 3 cut(s) 197, 386, 527
AgsI TTSAA 2 cut(s) 41, 542
AjnI CCWGG 2 cut(s) 406, 422
AluBI AGCT 4 cut(s) 92, 204, 215, 478
AluI AGCT 4 cut(s) 92, 204, 215, 478
AlwI GGATC 2 cut(s) 434, 513
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 2 cut(s) 108, 311
AvaII GGWCC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 408, 424
BcnI CCSGG 2 cut(s) 108, 311
BfaI CTAG 3 cut(s) 93, 396, 552
BglII AGATCT 1 cut(s) 130
BisI GCNGC 2 cut(s) 16, 276
BlsI GCNGC 2 cut(s) 17, 277
Bme1390I CCNGG 4 cut(s) 108, 311, 408, 424
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 315, 393
BmrFI CCNGG 4 cut(s) 108, 311, 408, 424
BoxI GACNNNNGTC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 5, 510
BpuMI CCSGG 2 cut(s) 108, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 386, 527
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 408, 424
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 3 cut(s) 197, 386, 527
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 107, 311
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 197, 386, 527
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 3 cut(s) 130, 426, 505
BspACI CCGC 2 cut(s) 15, 289
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 315, 393
BspPI GGATC 2 cut(s) 434, 513
BsrI ACTGG 1 cut(s) 171
BssMI GATC 3 cut(s) 130, 426, 505
Bst2UI CCWGG 2 cut(s) 408, 424
Bst4CI ACNGT 2 cut(s) 358, 564
BstC8I GCNNGC 2 cut(s) 28, 351
BstDEI CTNAG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 3 cut(s) 133, 429, 508
BstMBI GATC 3 cut(s) 130, 426, 505
BstNI CCWGG 2 cut(s) 408, 424
BstNSI RCATGY 2 cut(s) 49, 518
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 106, 309, 406, 422
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 130, 505
BstYI RGATCY 2 cut(s) 130, 505
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 28, 351
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 3 cut(s) 77, 377, 518
CviAII CATG 5 cut(s) 46, 123, 153, 292, 515
CviJI RGCY 7 cut(s) 18, 92, 204, 215, 275, 316, 478
CviKI_1 RGCY 7 cut(s) 18, 92, 204, 215, 275, 316, 478
CviQI GTAC 3 cut(s) 77, 377, 518
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 132, 428, 507
DpnII GATC 3 cut(s) 130, 426, 505
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 406, 422
EcoT22I ATGCAT 1 cut(s) 516
FaeI CATG 5 cut(s) 49, 126, 156, 295, 518
FaqI GGGAC 1 cut(s) 405
FatI CATG 5 cut(s) 45, 122, 152, 291, 514
FauI CCCGC 1 cut(s) 296
FauNDI CATATG 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 16, 276
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 16, 276
FspBI CTAG 3 cut(s) 93, 396, 552
GluI GCNGC 2 cut(s) 16, 276
HaeIII GGCC 1 cut(s) 18
HapII CCGG 2 cut(s) 107, 311
Hin1II CATG 5 cut(s) 49, 126, 156, 295, 518
HinfI GANTC 2 cut(s) 184, 240
HpaII CCGG 2 cut(s) 107, 311
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 358, 564
HpyCH4V TGCA 3 cut(s) 443, 485, 514
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 5 cut(s) 49, 126, 156, 295, 518
Kzo9I GATC 3 cut(s) 130, 426, 505
LmnI GCTCC 2 cut(s) 283, 313
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 3 cut(s) 93, 396, 552
MaeIII GTNAC 2 cut(s) 5, 457
MalI GATC 3 cut(s) 132, 428, 507
MboI GATC 3 cut(s) 130, 426, 505
MboII GAAGA 2 cut(s) 95, 140
MflI RGATCY 2 cut(s) 130, 505
MluCI AATT 4 cut(s) 101, 113, 438, 464
MnlI CCTC 5 cut(s) 27, 29, 66, 198, 380
Mph1103I ATGCAT 1 cut(s) 516
MseI TTAA 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 15, 215
MspI CCGG 2 cut(s) 107, 311
MspR9I CCNGG 4 cut(s) 108, 311, 408, 424
MvaI CCWGG 2 cut(s) 408, 424
MvnI CGCG 1 cut(s) 66
NciI CCSGG 2 cut(s) 108, 311
NdeI CATATG 1 cut(s) 453
NdeII GATC 3 cut(s) 130, 426, 505
NlaIII CATG 5 cut(s) 49, 126, 156, 295, 518
NlaIV GGNNCC 2 cut(s) 315, 393
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 2 cut(s) 49, 518
PfeI GAWTC 2 cut(s) 184, 240
PfoI TCCNGGA 2 cut(s) 309, 406
PkrI GCNGC 2 cut(s) 17, 277
PpuMI RGGWCCY 1 cut(s) 392
PshAI GACNNNNGTC 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 406, 422
PspGI CCWGG 2 cut(s) 406, 422
PspN4I GGNNCC 2 cut(s) 315, 393
PspPI GGNCC 1 cut(s) 392
PspPPI RGGWCCY 1 cut(s) 392
PsuI RGATCY 2 cut(s) 130, 505
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 3 cut(s) 78, 378, 519
RsaNI GTAC 3 cut(s) 77, 377, 518
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 2 cut(s) 16, 276
Sau3AI GATC 3 cut(s) 130, 426, 505
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 4 cut(s) 108, 311, 408, 424
SetI ASST 7 cut(s) 94, 206, 217, 341, 397, 480, 523
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 20, 525
SmoI CTYRAG 2 cut(s) 20, 525
Sse9I AATT 4 cut(s) 101, 113, 438, 464
SsiI CCGC 2 cut(s) 15, 289
SspMI CTAG 3 cut(s) 93, 396, 552
StyD4I CCNGG 4 cut(s) 106, 309, 406, 422
TaaI ACNGT 2 cut(s) 358, 564
TaqI TCGA 3 cut(s) 320, 342, 429
TasI AATT 4 cut(s) 101, 113, 438, 464
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 184, 240
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 113
XceI RCATGY 2 cut(s) 49, 518
XspI CTAG 3 cut(s) 93, 396, 552
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.