Rh1AG378800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000704
Physical Location & Seq
Forward (+)
61072557 .. 61073805
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG378800.1

Sequence Viewer

Length: 954 bp
ATGGAAGATCTCTCGTTGATGATACTAGTTTTGACCCTCATATCACTTTTTTCTGGGTATTTTATCAAGTTTAAAACATCACTAGGGAAGAAACTTCCACCAGGGTCATTTGGTATTCCGTTAATTGGAGAGTCCATAAGCTTCATCCGAGCACAAATACAGGACGGATCCGATGAGTGGATCCGGTCCCGTATCCTCAAGTATGGACCAGTCTTCAAGACCTCGCTCATGGGATCTAAAACGGTGGTTATAACTGGCCAAGCTGGAAACCGGTTTGTGTTTGGTGGAGGTGACACTGGTATTGGAGGCAACCAAGTAGCAACTGTAGCCAGAATTCTCGGAAAGCACAGCATATTTGAGATTTCTGGGTTTAGGCACAAGCTTGTGAGGAGTGCCATAACCAACTTCCTAAAGCCAGAAAACATTCAAAGAATTGTAGGCGAAATCGATTTGTTAGTCAAAGACCAAATTTTCAAGGAACTCGATGGCAAGGATGTAGTACAATTAGTGCCTTTGGTGAAGAGATTAACATTCAAGGTTACTTGCAGTTTGTTTTTTGGACTACCAGAAGGCAAAGACCAAGATACATTGTTTGAAGACTTTACTATTGCCATCAAGGGTCTGTGGGCAATTCCATTAAACCTTCTAGGCACTCAATTTTACAAAGCAGTGCAAGCACGTGGCAGGATAGCCAAGCTCCTCACCAAGCTCATCAAGGAAAAGAAGAATAAGGCAACAAAAATGACCCCCCAGAACAATGACATCATCTCAGCCCTGCTTCTTCTGATAGATGAAGTTGGTAAGCCTCTGCAAGAGCAAGAGATTGTTGATAATCTCATCACTGTGATAGTTGCTAGCCATGACACCACCTCAATTCTCCTGAGCCTCCTTTTAAGGCATCTTTCTACAGATTCCAAGATTTTCAGTGAGGTCCTTCAAGGTAATTACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

317

Amino Acids

35.12

Weight (kDa)

9.48

Isoelectric Point (pI)

23.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 311 3e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AclWI GGATC 5 cut(s) 162, 175, 175, 188, 241
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 2 cut(s) 333, 468
AcvI CACGTG 1 cut(s) 680
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 125, 177
AgeI ACCGGT 1 cut(s) 270
AgsI TTSAA 6 cut(s) 217, 428, 475, 535, 596, 938
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 5 cut(s) 141, 263, 382, 697, 709
AluI AGCT 5 cut(s) 141, 263, 382, 697, 709
Alw21I GWGCWC 1 cut(s) 154
AlwI GGATC 5 cut(s) 162, 175, 175, 188, 241
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 333, 468
AsiGI ACCGGT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 3 cut(s) 186, 206, 931
AsuHPI GGTGA 3 cut(s) 302, 529, 694
AsuNHI GCTAGC 1 cut(s) 854
AvaII GGWCC 3 cut(s) 186, 206, 931
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 2 cut(s) 167, 180
BbrPI CACGTG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 205, 603
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 2 cut(s) 479, 620
BciT130I CCWGG 1 cut(s) 102
BciVI GTATCC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 83, 647, 855
BfmI CTRYAG 2 cut(s) 324, 906
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 3 cut(s) 186, 206, 931
BmgT120I GGNCC 3 cut(s) 186, 206, 931
BmiI GGNNCC 3 cut(s) 169, 182, 188
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 907
BmtI GCTAGC 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 205, 603
Bpu10I CCTNAGC 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 447
BsaAI YACGTR 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 183, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 177
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 3 cut(s) 209, 259, 301
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 144, 499
BseLI CCNNNNNNNGG 2 cut(s) 125, 177
BseMII CTCAG 2 cut(s) 783, 872
BseNI ACTGG 3 cut(s) 209, 259, 301
BseRI GAGGAG 2 cut(s) 403, 689
BshFI GGCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 184, 271
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 125, 177
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 7, 167, 180, 233
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 782, 873
BspDI ATCGAT 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 169, 182, 188
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 5 cut(s) 162, 175, 175, 188, 241
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 3 cut(s) 209, 259, 301
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 4 cut(s) 7, 167, 180, 233
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 244, 325, 844
Bst6I CTCTTC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 675, 856
BstDEI CTNAG 2 cut(s) 769, 881
BstF5I GGATG 2 cut(s) 144, 499
BstKTI GATC 4 cut(s) 10, 170, 183, 236
BstMBI GATC 4 cut(s) 7, 167, 180, 233
BstMWI GCNNNNNNNGC 2 cut(s) 326, 674
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 324, 906
BstV2I GAAGAC 2 cut(s) 205, 603
BstX2I RGATCY 4 cut(s) 7, 167, 180, 233
BstYI RGATCY 4 cut(s) 7, 167, 180, 233
Bsu15I ATCGAT 1 cut(s) 447
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 447
BtsCI GGATG 2 cut(s) 144, 499
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 4 cut(s) 294, 675, 840, 931
Cac8I GCNNGC 2 cut(s) 675, 856
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 186, 206, 931
ClaI ATCGAT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 500
CspAI ACCGGT 1 cut(s) 270
CviAII CATG 2 cut(s) 229, 860
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 2 cut(s) 769, 881
DpnI GATC 4 cut(s) 9, 169, 182, 235
DpnII GATC 4 cut(s) 7, 167, 180, 233
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco47I GGWCC 3 cut(s) 186, 206, 931
Eco72I CACGTG 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 931
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 232, 863
FaiI YATR 8 cut(s) 41, 137, 204, 230, 251, 353, 398, 861
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 228, 859
FokI GGATG 2 cut(s) 131, 506
FspBI CTAG 4 cut(s) 26, 83, 647, 855
HaeIII GGCC 1 cut(s) 258
HapII CCGG 2 cut(s) 184, 271
Hin1II CATG 2 cut(s) 232, 863
HindIII AAGCTT 2 cut(s) 139, 380
HinfI GANTC 2 cut(s) 131, 911
HpaII CCGG 2 cut(s) 184, 271
HphI GGTGA 3 cut(s) 302, 529, 694
Hpy188I TCNGA 4 cut(s) 149, 172, 341, 786
Hpy188III TCNNGA 2 cut(s) 217, 880
HpyAV CCTTC 3 cut(s) 563, 653, 944
HpyCH4III ACNGT 3 cut(s) 244, 325, 844
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 3 cut(s) 546, 673, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 674
HpyF3I CTNAG 2 cut(s) 769, 881
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 2 cut(s) 232, 863
Kzo9I GATC 4 cut(s) 7, 167, 180, 233
LmnI GCTCC 1 cut(s) 702
LweI GCATC 1 cut(s) 907
MaeI CTAG 4 cut(s) 26, 83, 647, 855
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 2 cut(s) 290, 538
MalI GATC 4 cut(s) 9, 169, 182, 235
MboI GATC 4 cut(s) 7, 167, 180, 233
MboII GAAGA 7 cut(s) 17, 100, 205, 532, 608, 736, 773
MflI RGATCY 4 cut(s) 7, 167, 180, 233
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 9 cut(s) 123, 333, 432, 468, 503, 630, 656, 873, 943
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 140
Mox20I TGGCCA 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 423
MscI TGGCCA 1 cut(s) 258
MseI TTAA 5 cut(s) 72, 122, 527, 638, 893
MslI CAYNNNNRTG 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 2 cut(s) 184, 271
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 326, 674
NdeII GATC 4 cut(s) 7, 167, 180, 233
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 2 cut(s) 232, 863
NlaIV GGNNCC 3 cut(s) 169, 182, 188
NmuCI GTSAC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 911
PinAI ACCGGT 1 cut(s) 270
PleI GAGTC 1 cut(s) 139
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 931
PsiI TTATAA 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 1 cut(s) 100
PspCI CACGTG 1 cut(s) 680
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 169, 182, 188
PspPI GGNCC 3 cut(s) 186, 206, 931
PspPPI RGGWCCY 1 cut(s) 931
PsuI RGATCY 4 cut(s) 7, 167, 180, 233
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 5 cut(s) 72, 122, 527, 638, 893
Sau3AI GATC 4 cut(s) 7, 167, 180, 233
Sau96I GGNCC 3 cut(s) 186, 206, 931
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 2 cut(s) 324, 906
SinI GGWCC 3 cut(s) 186, 206, 931
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 9 cut(s) 123, 333, 432, 468, 503, 630, 656, 873, 943
SspMI CTAG 4 cut(s) 26, 83, 647, 855
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 244, 325, 844
TaiI ACGT 1 cut(s) 682
TaqI TCGA 2 cut(s) 447, 483
TasI AATT 9 cut(s) 123, 333, 432, 468, 503, 630, 656, 873, 943
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 5 cut(s) 72, 122, 527, 638, 893
Tru9I TTAA 5 cut(s) 72, 122, 527, 638, 893
TscAI CASTG 4 cut(s) 301, 675, 847, 931
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 133, 807
TspGWI ACGGA 2 cut(s) 108, 180
TspRI CASTG 4 cut(s) 301, 675, 847, 931
VpaK11BI GGWCC 3 cut(s) 186, 206, 931
XapI RAATTY 2 cut(s) 333, 468
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 4 cut(s) 26, 83, 647, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.