RchiOBHm_Chr5g0073161

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000704
Physical Location & Seq
Forward (+)
79251979 .. 79253591
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34807

Sequence Viewer

Length: 399 bp
ATGGGTTCCCCAACTGTGATTGTTATAGGTCAAGAAGGGAACAAGTTTATACTTGGTGCTGAAGATGATGTTCTTGCTGCCAAACAACCTCCCACCTTGTTAGCCATTGGAGGAAAACAGAGTATATTTGAACTTACAGGATCATGGTACAGGTTGGTAAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCGGGGGGGGGGGGGGGGGGGGGTGGTCTTGTTTGAGGACTTTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

132

Amino Acids

14.31

Weight (kDa)

9.04

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 3 cut(s) 131, 184, 200
AluBI AGCT 2 cut(s) 177, 298
AluI AGCT 2 cut(s) 177, 298
AlwI GGATC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 77
AseI ATTAAT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 184, 277
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 352
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 323, 330
BpiI GAAGAC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 321, 346
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 357
Bsp143I GATC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 2 cut(s) 321, 346
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 321, 346
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 144, 238, 289
CviJI RGCY 5 cut(s) 104, 177, 187, 278, 298
CviKI_1 RGCY 5 cut(s) 104, 177, 187, 278, 298
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 81
Eco91I GGTNACC 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 283
FaeI CATG 3 cut(s) 147, 241, 292
FaiI YATR 8 cut(s) 26, 50, 125, 145, 239, 272, 290, 311
FatI CATG 3 cut(s) 143, 237, 288
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 308, 353
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HapII CCGG 1 cut(s) 351
Hin1II CATG 3 cut(s) 147, 241, 292
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 184, 277
Hpy188III TCNNGA 3 cut(s) 32, 181, 232
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 147, 241, 292
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 123, 136, 201, 227, 364
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 323, 330
MaeIII GTNAC 2 cut(s) 240, 283
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 3 cut(s) 74, 188, 304
MluCI AATT 1 cut(s) 224
MnlI CCTC 3 cut(s) 99, 104, 378
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 227, 306
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 352
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 140
NlaIII CATG 3 cut(s) 147, 241, 292
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 227
PspEI GGTNACC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 227, 306
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 352
SetI ASST 6 cut(s) 31, 91, 98, 155, 179, 300
SfaNI GCATC 2 cut(s) 323, 330
Sse9I AATT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 224
Tru1I TTAA 2 cut(s) 227, 306
Tru9I TTAA 2 cut(s) 227, 306
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 305, 383
VspI ATTAAT 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.