MD11G1053900.v1.1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000704
Physical Location & Seq
Reverse (-)
4591595 .. 4593625
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1053900.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGGCAGCTTTCATTGCAGTAATTGTAATAACTTTGTTCATCGCTTTTTTCCTTTCAAAATTTCTGTTTAAGGATCAGACCAAAAACCTGCCAGGAGGGTCTTTAGGGTTTCCCTTAATCGGAGAGACGTTCAGCTTTCTTCAAGCACAGAAACAAGATCAAGGACCCGAATGGCTCGAAGAGAGAACATCAAAGCATGGACCAATGTTCAAAACCTCCTTGATGGGTTCCCCCACTGTGGTGGTTGTTGGTCAAGCGGGTAACAAGTTCGTCCTTGGTGCTGAGGATGATGTCCTTGCCGCCAAGCAACCTGTCACCCTGGTAGCCATTTCTGGAAAGCAAAATATATTTGAACTTACAGGCTCAAGATTGGTAAAGGGAGCAATGGTGAGCTTCTTAAAGCCAGAAAGTCTACAGAACTATATTAAACGAATGGATGGACTGATCAAGACCATGTTACTAAAAGAAACCGAAAACAAGGACACCATAAAAGTTGTGGTCACCATGAAGAAATTTACATTCACCATAGCATCCAGCATCCTTTTCGGCATCGATGATGAGCGCACCAGGGAGGTTTTGTTTGATGATTTTTCTTTAGCATTCAAAGCAGTTTGGTCTCTTCCTGTTAACTTCCCTGGCACTGTTTACTGGAAAGGCCTAAGAGCCCGGTCAAGGATTGCTAACCAGATTTTGCCAATACTTGAGCAAAGAAGGGAGGCGTTTTCAAAAGGAAAATTAAGCCCTACAAGCGATGTTTTCTCATCATTGCTAGCATTAAGAGATGAAAATGAAGAACCTGTTTCAGATGATTTGATCGTGGATAATTATGTCACATTGATGGTAGCTAGTCACGACACTTCAGCCATTCTTCTGAGCCTGATGATATGGAAGCTGTCCAAAGACTCTGAGATATACAACAAAGTTTTAGAGGAACAAATGGACATTATAGGGAAGAGGGAGGAGGGAGCAGAAAATAGGCTGACTTGGGCTGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATTATCCCTCCTGTGTTTGGCAGCTTTAGAAAAGCACTTAAAGACATTGAATATGGTGGCTATGATATCCCCAAGGGATGGCAGGTGTTTTGGGTGGCCCATGGAACTCATATGAACAAAGAGATATTTGACAAGCCTACAGAGTTTGATCCATCAAGGTTTGAGAACCCATCAAAACCAATCCCTCCCTATGCTTATATTCCATTTGGAGGAGGCCTCCACACTTGCATAGGGAATGAGTTTGCAAGAGTAGAAGTGCTCACTATCATCCACAACTTGGTGACAATGTATGAGTGGTCTTCGGTGTACCCTGATGAAGCTATCACCAGGCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGGAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

477

Amino Acids

53.86

Weight (kDa)

8.28

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 449 3.8e-63 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1114
Acc36I ACCTGC 2 cut(s) 96, 1114
AccB7I CCANNNNNTGG 2 cut(s) 1119, 1318
AccI GTMKAC 1 cut(s) 412
AciI CCGC 2 cut(s) 257, 300
AclWI GGATC 2 cut(s) 81, 1184
AcsI RAATTY 2 cut(s) 59, 512
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 1 cut(s) 1349
AfiI CCNNNNNNNGG 8 cut(s) 119, 238, 672, 1058, 1119, 1250, 1318, 1394
AgsI TTSAA 7 cut(s) 57, 143, 211, 353, 604, 726, 1091
AjnI CCWGG 5 cut(s) 91, 318, 566, 634, 1367
AleI CACNNNNGTG 1 cut(s) 239
AluBI AGCT 7 cut(s) 8, 135, 393, 845, 892, 1065, 1361
AluI AGCT 7 cut(s) 8, 135, 393, 845, 892, 1065, 1361
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 3 cut(s) 119, 621, 1403
AlwI GGATC 2 cut(s) 81, 1184
AoxI GGCC 3 cut(s) 655, 1137, 1255
ApeKI GCWGC 2 cut(s) 5, 1062
ApoI RAATTY 2 cut(s) 59, 512
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 3 cut(s) 164, 200, 1138
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 6 cut(s) 307, 400, 493, 514, 1333, 1357
AsuNHI GCTAGC 1 cut(s) 769
AvaII GGWCC 2 cut(s) 164, 200
BanII GRGCYC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 1332
Bbv12I GWGCWC 1 cut(s) 1302
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 17, 1074
BccI CCATC 7 cut(s) 217, 431, 832, 1113, 1201, 1219, 1396
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BciT130I CCWGG 5 cut(s) 93, 320, 568, 636, 1369
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 119, 621, 1403
BfaI CTAG 2 cut(s) 770, 846
BfmI CTRYAG 2 cut(s) 413, 1179
BfuAI ACCTGC 2 cut(s) 96, 1114
BisI GCNGC 3 cut(s) 6, 300, 1063
BlsI GCNGC 3 cut(s) 7, 301, 1064
Bme1390I CCNGG 6 cut(s) 93, 320, 568, 636, 667, 1369
Bme18I GGWCC 2 cut(s) 164, 200
BmgT120I GGNCC 3 cut(s) 164, 200, 1138
BmiI GGNNCC 2 cut(s) 166, 229
BmrFI CCNGG 6 cut(s) 93, 320, 568, 636, 667, 1369
BmsI GCATC 3 cut(s) 539, 546, 558
BmtI GCTAGC 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 1332
BplI GAGNNNNNCTC 2 cut(s) 1242, 1274
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 349, 722
BpuMI CCSGG 1 cut(s) 667
Bsa29I ATCGAT 1 cut(s) 552
BsaI GGTCTC 2 cut(s) 621, 1403
BsaJI CCNNGG 8 cut(s) 274, 318, 567, 634, 1113, 1141, 1392, 1418
BsaXI ACNNNNNCTCC 4 cut(s) 372, 402, 563, 593
Bsc4I CCNNNNNNNGG 8 cut(s) 119, 238, 672, 1058, 1119, 1250, 1318, 1394
Bse1I ACTGG 1 cut(s) 653
Bse3DI GCAATG 3 cut(s) 12, 390, 764
BseBI CCWGG 5 cut(s) 93, 320, 568, 636, 1369
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 8 cut(s) 274, 318, 567, 634, 1113, 1141, 1392, 1418
BseGI GGATG 7 cut(s) 292, 442, 530, 537, 1124, 1308, 1388
BseLI CCNNNNNNNGG 8 cut(s) 119, 238, 672, 1058, 1119, 1250, 1318, 1394
BseMI GCAATG 3 cut(s) 12, 390, 764
BseMII CTCAG 4 cut(s) 273, 863, 897, 981
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 974, 1266
BseXI GCAGC 2 cut(s) 17, 1074
BshFI GGCC 3 cut(s) 657, 1139, 1257
BshVI ATCGAT 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 1302
BsiSI CCGG 1 cut(s) 667
BslI CCNNNNNNNGG 8 cut(s) 119, 238, 672, 1058, 1119, 1250, 1318, 1394
BsmAI GTCTC 3 cut(s) 119, 621, 1403
BsmBI CGTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 3 cut(s) 657, 1139, 1257
Bso31I GGTCTC 2 cut(s) 621, 1403
Bsp1286I GDGCHC 2 cut(s) 667, 1302
Bsp143I GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
Bsp19I CCATGG 2 cut(s) 1141, 1392
BspACI CCGC 2 cut(s) 257, 300
BspANI GGCC 3 cut(s) 657, 1139, 1257
BspCNI CTCAG 4 cut(s) 274, 864, 898, 982
BspDI ATCGAT 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 166, 229
BspMI ACCTGC 2 cut(s) 96, 1114
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 2 cut(s) 81, 1184
BspTNI GGTCTC 2 cut(s) 621, 1403
BsrDI GCAATG 3 cut(s) 12, 390, 764
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 8 cut(s) 274, 318, 567, 634, 1113, 1141, 1392, 1418
BssMI GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
BssT1I CCWWGG 5 cut(s) 274, 1113, 1141, 1392, 1418
Bst2UI CCWGG 5 cut(s) 93, 320, 568, 636, 1369
Bst4CI ACNGT 2 cut(s) 238, 643
Bst6I CTCTTC 3 cut(s) 174, 624, 947
BstAPI GCANNNNNTGC 1 cut(s) 1378
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 5 cut(s) 282, 659, 872, 906, 990
BstDSI CCRYGG 2 cut(s) 1141, 1392
BstEII GGTNACC 1 cut(s) 499
BstF5I GGATG 7 cut(s) 292, 442, 530, 537, 1124, 1308, 1388
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 6 cut(s) 76, 160, 447, 816, 1192, 1413
BstMAI GTCTC 3 cut(s) 119, 621, 1403
BstMBI GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
BstMWI GCNNNNNNNGC 4 cut(s) 14, 605, 747, 1378
BstNI CCWGG 5 cut(s) 93, 320, 568, 636, 1369
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 6 cut(s) 91, 318, 566, 634, 665, 1367
BstSFI CTRYAG 2 cut(s) 413, 1179
BstV1I GCAGC 2 cut(s) 17, 1074
BstV2I GAAGAC 1 cut(s) 1332
BstXI CCANNNNNNTGG 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 3 cut(s) 657, 1139, 1257
BsuTUI ATCGAT 1 cut(s) 552
BtgI CCRYGG 2 cut(s) 1141, 1392
BtgZI GCGATG 2 cut(s) 25, 765
BtsCI GGATG 7 cut(s) 292, 442, 530, 537, 1124, 1308, 1388
BtsIMutI CAGTG 2 cut(s) 234, 639
BveI ACCTGC 2 cut(s) 96, 1114
Cac8I GCNNGC 1 cut(s) 771
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 3 cut(s) 164, 200, 1138
ClaI ATCGAT 1 cut(s) 552
Csp6I GTAC 1 cut(s) 1348
CviAII CATG 6 cut(s) 197, 454, 505, 1014, 1142, 1393
CviQI GTAC 1 cut(s) 1348
DdeI CTNAG 5 cut(s) 282, 659, 872, 906, 990
DpnI GATC 6 cut(s) 75, 159, 446, 815, 1191, 1412
DpnII GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
Eam1104I CTCTTC 3 cut(s) 174, 624, 947
EarI CTCTTC 3 cut(s) 174, 624, 947
Eco130I CCWWGG 5 cut(s) 274, 1113, 1141, 1392, 1418
Eco147I AGGCCT 2 cut(s) 657, 1257
Eco24I GRGCYC 1 cut(s) 667
Eco31I GGTCTC 2 cut(s) 621, 1403
Eco32I GATATC 1 cut(s) 1108
Eco47I GGWCC 2 cut(s) 164, 200
Eco57I CTGAAG 1 cut(s) 843
Eco91I GGTNACC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 499
EcoRII CCWGG 5 cut(s) 91, 318, 566, 634, 1367
EcoRV GATATC 1 cut(s) 1108
EcoT14I CCWWGG 5 cut(s) 274, 1113, 1141, 1392, 1418
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 5 cut(s) 274, 1113, 1141, 1392, 1418
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 6 cut(s) 200, 457, 508, 1017, 1145, 1396
FalI AAGNNNNNCTT 1 cut(s) 1411
FatI CATG 6 cut(s) 196, 453, 504, 1013, 1141, 1392
FauI CCCGC 1 cut(s) 250
FauNDI CATATG 1 cut(s) 1152
FbaI TGATCA 1 cut(s) 444
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 6, 300, 1063
FokI GGATG 7 cut(s) 299, 449, 517, 524, 1131, 1295, 1375
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 3 cut(s) 6, 300, 1063
FspBI CTAG 2 cut(s) 770, 846
GlaI GCGC 1 cut(s) 563
GluI GCNGC 3 cut(s) 6, 300, 1063
HaeIII GGCC 3 cut(s) 657, 1139, 1257
HapII CCGG 1 cut(s) 667
HhaI GCGC 1 cut(s) 564
Hin1II CATG 6 cut(s) 200, 457, 508, 1017, 1145, 1396
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 1 cut(s) 902
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 1 cut(s) 667
HphI GGTGA 6 cut(s) 307, 400, 493, 514, 1333, 1357
Hpy166II GTNNAC 4 cut(s) 413, 628, 646, 1348
Hpy188I TCNGA 5 cut(s) 78, 122, 805, 873, 907
Hpy188III TCNNGA 5 cut(s) 333, 366, 448, 851, 1408
Hpy8I GTNNAC 4 cut(s) 413, 628, 646, 1348
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 2 cut(s) 238, 643
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 17, 1025, 1269, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 605, 747, 1378
HpyF3I CTNAG 5 cut(s) 282, 659, 872, 906, 990
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 6 cut(s) 200, 457, 508, 1017, 1145, 1396
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 444
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
LmnI GCTCC 2 cut(s) 380, 965
Lsp1109I GCAGC 2 cut(s) 17, 1074
LweI GCATC 3 cut(s) 539, 546, 558
MaeI CTAG 2 cut(s) 770, 846
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 7 cut(s) 260, 313, 456, 499, 829, 848, 1321
MalI GATC 6 cut(s) 75, 159, 446, 815, 1191, 1412
MboI GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
MboII GAAGA 8 cut(s) 131, 191, 520, 611, 803, 860, 964, 1332
MhlI GDGCHC 2 cut(s) 667, 1302
MluCI AATT 5 cut(s) 21, 59, 512, 734, 823
MlyI GAGTC 1 cut(s) 896
MseI TTAA 9 cut(s) 69, 116, 398, 426, 627, 737, 776, 1080, 1429
MslI CAYNNNNRTG 2 cut(s) 239, 836
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 6 cut(s) 93, 320, 568, 636, 667, 1369
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 5 cut(s) 93, 320, 568, 636, 1369
MwoI GCNNNNNNNGC 4 cut(s) 14, 605, 747, 1378
NciI CCSGG 1 cut(s) 667
NcoI CCATGG 2 cut(s) 1141, 1392
NdeI CATATG 1 cut(s) 1152
NdeII GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 6 cut(s) 200, 457, 508, 1017, 1145, 1396
NlaIV GGNNCC 2 cut(s) 166, 229
NmuCI GTSAC 5 cut(s) 313, 499, 829, 848, 1321
OliI CACNNNNGTG 1 cut(s) 239
PaqCI CACCTGC 1 cut(s) 1114
PceI AGGCCT 2 cut(s) 657, 1257
PctI GAATGC 1 cut(s) 599
PflMI CCANNNNNTGG 2 cut(s) 1119, 1318
PkrI GCNGC 3 cut(s) 7, 301, 1064
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 5 cut(s) 91, 318, 566, 634, 1367
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 5 cut(s) 91, 318, 566, 634, 1367
PspN4I GGNNCC 2 cut(s) 166, 229
PspPI GGNCC 3 cut(s) 164, 200, 1138
PspPPI RGGWCCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 1349
RsaNI GTAC 1 cut(s) 1348
RseI CAYNNNNRTG 2 cut(s) 239, 836
SaqAI TTAA 9 cut(s) 69, 116, 398, 426, 627, 737, 776, 1080, 1429
SatI GCNGC 3 cut(s) 6, 300, 1063
Sau3AI GATC 6 cut(s) 73, 157, 444, 813, 1189, 1410
Sau96I GGNCC 3 cut(s) 164, 200, 1138
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 6 cut(s) 93, 320, 568, 636, 667, 1369
SduI GDGCHC 2 cut(s) 667, 1302
SfaNI GCATC 3 cut(s) 539, 546, 558
SfcI CTRYAG 2 cut(s) 413, 1179
SinI GGWCC 2 cut(s) 164, 200
SmiMI CAYNNNNRTG 2 cut(s) 239, 836
SmlI CTYRAG 2 cut(s) 364, 701
SmoI CTYRAG 2 cut(s) 364, 701
Sse9I AATT 5 cut(s) 21, 59, 512, 734, 823
SseBI AGGCCT 2 cut(s) 657, 1257
SsiI CCGC 2 cut(s) 257, 300
SspMI CTAG 2 cut(s) 770, 846
StuI AGGCCT 2 cut(s) 657, 1257
StyD4I CCNGG 6 cut(s) 91, 318, 566, 634, 665, 1367
StyI CCWWGG 5 cut(s) 274, 1113, 1141, 1392, 1418
TaaI ACNGT 2 cut(s) 238, 643
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 177, 552
TasI AATT 5 cut(s) 21, 59, 512, 734, 823
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 9 cut(s) 69, 116, 398, 426, 627, 737, 776, 1080, 1429
Tru9I TTAA 9 cut(s) 69, 116, 398, 426, 627, 737, 776, 1080, 1429
TscAI CASTG 2 cut(s) 241, 646
TseFI GTSAC 5 cut(s) 313, 499, 829, 848, 1321
TseI GCWGC 2 cut(s) 5, 1062
Tsp45I GTSAC 5 cut(s) 313, 499, 829, 848, 1321
TspDTI ATGAA 7 cut(s) 28, 521, 798, 804, 1019, 1169, 1371
TspRI CASTG 2 cut(s) 241, 646
Van91I CCANNNNNTGG 2 cut(s) 1119, 1318
VpaK11BI GGWCC 2 cut(s) 164, 200
XapI RAATTY 2 cut(s) 59, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 412
XspI CTAG 2 cut(s) 770, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.