RLG00000033896

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000704
Physical Location & Seq
Reverse (-)
33854797 .. 33856641
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033896

Sequence Viewer

Length: 1158 bp
ATGCGTGCCAACACTGCAGAAAAATGGCTTGAACAAAGGATAGAAAAGTACGGGCCAGTTTCTAAGCTAAGTCTATTTGGCAAGCCAACAGTCTTCATCCACGGACAATCTGCAAACAAGTTTATATTCACCAGTGATGGGAGCACAATTTCCAGCCAACAAAATAAGTCTATTTGTAGGATTTTGGGGGAAAGGAGTATACCTGAGCTGAATGCTGAGGATCACAAACGTGTCAGAAGTGCGCTTATGCTATTCTTGAAGCCTGAGTCACTGAAGCAATATGTGTGGAAAATGGATGAAGAAATCAGACAGCACCTTGAGATGCATTGGCATGCCAAACAACAAGTAACAAACTTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGCAGAGATGAATTCGTGGAGTTGCCGGTTAACTTGCCCTTCACGCGTTACAACAGCGGCATCAAGGCAAGCAAAAGGGTTCAAAACATGCTCAAACAACTTATACGCCAAAAGAGGGTACAGCTTGAGCAAAAAGGGGTTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGAAATGATGAAGGTAAAGAAGAATTAACAGAATTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGACATGACACTTCATCTGTTCTGATTAAGTTCCTTTTGCAGCTTCTCGCTAATGAACCAGCTGTTTATGCAGCCCTTCTTCAAGGTATGCCTAACCAAACCTTGCCAAAAATGAAATACACATGGAAAGTAGCACTGGAAACTCTGAGGATGACTCCTCCTGTCTTTGGTGGCTTTAGGACTGCTGTCAAAGATATATTCAGCTGGGCTGCTCCTATGACCCACATGGATGATAACATATTCCCGGAGCCATCGAAGTTTGATCCAAGTAGGTTCGACAAGCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGTTTGCCAGGATCGAAACCCTAATTGCAATACACCATATGGTAACTCAATTCACTTGGAAGCTATGTACAGACAATCACTTCAGTAGGGATCTAATGCCTGTACCTACTCAAGGACTGCCCATTGAAATCACGCCTAGAATACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

386

Amino Acids

44.22

Weight (kDa)

9.16

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 363 2.1e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AccII CGCG 1 cut(s) 451
AciI CCGC 1 cut(s) 462
AclWI GGATC 4 cut(s) 228, 914, 1025, 1104
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 2 cut(s) 293, 1072
AfaI GTAC 5 cut(s) 50, 525, 969, 1075, 1110
AfiI CCNNNNNNNGG 5 cut(s) 138, 520, 824, 977, 1118
AflIII ACRYGT 2 cut(s) 229, 449
AgsI TTSAA 6 cut(s) 32, 259, 395, 488, 740, 1133
AjnI CCWGG 2 cut(s) 997, 1013
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 7 cut(s) 67, 208, 529, 700, 719, 861, 1069
AluI AGCT 7 cut(s) 67, 208, 529, 700, 719, 861, 1069
Alw21I GWGCWC 2 cut(s) 146, 633
Alw44I GTGCAC 1 cut(s) 629
AlwI GGATC 4 cut(s) 228, 914, 1025, 1104
AoxI GGCC 1 cut(s) 53
ApaLI GTGCAC 1 cut(s) 629
ApeKI GCWGC 3 cut(s) 697, 728, 866
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 53, 983
AsuC2I CCSGG 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 121
AvaII GGWCC 1 cut(s) 983
BaeGI GKGCMC 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 146, 633
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 709, 740, 853
BccI CCATC 3 cut(s) 131, 619, 916
BciT130I CCWGG 2 cut(s) 999, 1015
BcnI CCSGG 1 cut(s) 902
BfaI CTAG 2 cut(s) 987, 1143
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 4 cut(s) 463, 698, 729, 867
BlsI GCNGC 4 cut(s) 464, 699, 730, 868
Bme1390I CCNGG 3 cut(s) 902, 999, 1015
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 2 cut(s) 53, 983
BmiI GGNNCC 2 cut(s) 906, 984
BmrFI CCNGG 3 cut(s) 902, 999, 1015
BmsI GCATC 3 cut(s) 312, 474, 591
BoxI GACNNNNGTC 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 796, 828
Bpu10I CCTNAGC 3 cut(s) 204, 216, 578
BpuEI CTTGAG 3 cut(s) 338, 551, 1101
BpuMI CCSGG 1 cut(s) 902
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 520, 824, 977, 1118
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 56, 132, 798
BseBI CCWGG 2 cut(s) 999, 1015
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 5 cut(s) 96, 301, 582, 813, 892
BseLI CCNNNNNNNGG 5 cut(s) 138, 520, 824, 977, 1118
BseMII CTCAG 4 cut(s) 195, 207, 255, 794
BseNI ACTGG 3 cut(s) 56, 132, 798
BseRI GAGGAG 1 cut(s) 804
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 3 cut(s) 709, 740, 853
BseYI CCCAGC 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 146, 633
BsiSI CCGG 2 cut(s) 431, 902
BslFI GGGAC 1 cut(s) 996
BslI CCNNNNNNNGG 5 cut(s) 138, 520, 824, 977, 1118
BsmFI GGGAC 1 cut(s) 996
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 146, 633
Bsp1407I TGTACA 1 cut(s) 1073
Bsp143I GATC 4 cut(s) 220, 919, 1017, 1096
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 4 cut(s) 196, 208, 256, 795
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 906, 984
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 4 cut(s) 228, 914, 1025, 1104
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 1073
BsrI ACTGG 3 cut(s) 56, 132, 798
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 4 cut(s) 220, 919, 1017, 1096
BssNAI GTATAC 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 999, 1015
Bst4CI ACNGT 3 cut(s) 91, 949, 1155
BstAUI TGTACA 1 cut(s) 1073
BstC8I GCNNGC 5 cut(s) 6, 83, 333, 475, 942
BstDEI CTNAG 7 cut(s) 63, 68, 204, 216, 264, 578, 803
BstDSI CCRYGG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 1116
BstF5I GGATG 5 cut(s) 96, 301, 582, 813, 892
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 4 cut(s) 223, 922, 1020, 1099
BstMBI GATC 4 cut(s) 220, 919, 1017, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 14, 448, 579, 725
BstNI CCWGG 2 cut(s) 999, 1015
BstNSI RCATGY 2 cut(s) 335, 496
BstPAI GACNNNNGTC 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 900, 997, 1013
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 709, 740, 853
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 1096
BstZ17I GTATAC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 5 cut(s) 96, 301, 582, 813, 892
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 139, 269, 791
Cac8I GCNNGC 5 cut(s) 6, 83, 333, 475, 942
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 53, 983
Csp6I GTAC 5 cut(s) 49, 524, 968, 1074, 1109
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 7 cut(s) 332, 493, 640, 649, 662, 780, 883
CviQI GTAC 5 cut(s) 49, 524, 968, 1074, 1109
DdeI CTNAG 7 cut(s) 63, 68, 204, 216, 264, 578, 803
DpnI GATC 4 cut(s) 222, 921, 1019, 1098
DpnII GATC 4 cut(s) 220, 919, 1017, 1096
Eco47I GGWCC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 293, 1072
EcoNI CCTNNNNNAGG 1 cut(s) 1116
EcoO109I RGGNCCY 1 cut(s) 983
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 997, 1013
EcoT22I ATGCAT 1 cut(s) 327
FaeI CATG 7 cut(s) 335, 496, 643, 652, 665, 783, 886
FaqI GGGAC 1 cut(s) 996
FatI CATG 7 cut(s) 331, 492, 639, 648, 661, 779, 882
FauNDI CATATG 1 cut(s) 1044
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 463, 698, 729, 867
FokI GGATG 5 cut(s) 83, 308, 569, 820, 899
Fsp4HI GCNGC 4 cut(s) 463, 698, 729, 867
FspBI CTAG 2 cut(s) 987, 1143
GlaI GCGC 1 cut(s) 243
GluI GCNGC 4 cut(s) 463, 698, 729, 867
GsaI CCCAGC 1 cut(s) 865
HaeIII GGCC 1 cut(s) 55
HapII CCGG 2 cut(s) 431, 902
HhaI GCGC 1 cut(s) 244
Hin1II CATG 7 cut(s) 335, 496, 643, 652, 665, 783, 886
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 266, 811
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 2 cut(s) 431, 902
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 3 cut(s) 200, 436, 631
Hpy188I TCNGA 5 cut(s) 236, 308, 587, 681, 804
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 200, 436, 631
HpyAV CCTTC 3 cut(s) 454, 590, 743
HpyCH4III ACNGT 3 cut(s) 91, 949, 1155
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 8 cut(s) 17, 113, 325, 631, 656, 697, 728, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 448, 579, 725
HpyF3I CTNAG 7 cut(s) 63, 68, 204, 216, 264, 578, 803
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 7 cut(s) 335, 496, 643, 652, 665, 783, 886
HspAI GCGC 1 cut(s) 242
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 4 cut(s) 220, 919, 1017, 1096
LmnI GCTCC 3 cut(s) 141, 874, 904
Lsp1109I GCAGC 3 cut(s) 709, 740, 853
LweI GCATC 3 cut(s) 312, 474, 591
MaeI CTAG 2 cut(s) 987, 1143
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 4 cut(s) 267, 346, 452, 1048
MalI GATC 4 cut(s) 222, 921, 1019, 1098
MboI GATC 4 cut(s) 220, 919, 1017, 1096
MboII GAAGA 4 cut(s) 85, 311, 617, 728
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 2 cut(s) 146, 633
MluCI AATT 6 cut(s) 147, 416, 608, 617, 1029, 1055
MluI ACGCGT 1 cut(s) 449
MlyI GAGTC 2 cut(s) 275, 805
MnlI CCTC 8 cut(s) 211, 385, 392, 513, 572, 798, 825, 971
Mph1103I ATGCAT 1 cut(s) 327
MseI TTAA 4 cut(s) 363, 435, 611, 684
MslI CAYNNNNRTG 3 cut(s) 228, 330, 885
MspA1I CMGCKG 3 cut(s) 462, 719, 861
MspI CCGG 2 cut(s) 431, 902
MspR9I CCNGG 3 cut(s) 902, 999, 1015
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 999, 1015
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 4 cut(s) 14, 448, 579, 725
NciI CCSGG 1 cut(s) 902
NdeI CATATG 1 cut(s) 1044
NdeII GATC 4 cut(s) 220, 919, 1017, 1096
NlaIII CATG 7 cut(s) 335, 496, 643, 652, 665, 783, 886
NlaIV GGNNCC 2 cut(s) 906, 984
NmuCI GTSAC 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 2 cut(s) 335, 496
OliI CACNNNNGTG 1 cut(s) 228
PaeI GCATGC 1 cut(s) 335
PctI GAATGC 1 cut(s) 217
PfoI TCCNGGA 2 cut(s) 900, 997
PkrI GCNGC 4 cut(s) 464, 699, 730, 868
PleI GAGTC 2 cut(s) 274, 805
PpsI GAGTC 2 cut(s) 274, 805
PpuMI RGGWCCY 1 cut(s) 983
PshAI GACNNNNGTC 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 983
Psp6I CCWGG 2 cut(s) 997, 1013
PspFI CCCAGC 1 cut(s) 861
PspGI CCWGG 2 cut(s) 997, 1013
PspN4I GGNNCC 2 cut(s) 906, 984
PspPI GGNCC 2 cut(s) 53, 983
PspPPI RGGWCCY 1 cut(s) 983
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 1096
PvuII CAGCTG 2 cut(s) 719, 861
RsaI GTAC 5 cut(s) 50, 525, 969, 1075, 1110
RsaNI GTAC 5 cut(s) 49, 524, 968, 1074, 1109
RseI CAYNNNNRTG 3 cut(s) 228, 330, 885
SaqAI TTAA 4 cut(s) 363, 435, 611, 684
SatI GCNGC 4 cut(s) 463, 698, 729, 867
Sau3AI GATC 4 cut(s) 220, 919, 1017, 1096
Sau96I GGNCC 2 cut(s) 53, 983
SchI GAGTC 2 cut(s) 275, 805
ScrFI CCNGG 3 cut(s) 902, 999, 1015
SduI GDGCHC 2 cut(s) 146, 633
SfaNI GCATC 3 cut(s) 312, 474, 591
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 3 cut(s) 228, 330, 885
SmlI CTYRAG 3 cut(s) 317, 530, 1116
SmoI CTYRAG 3 cut(s) 317, 530, 1116
SphI GCATGC 1 cut(s) 335
Sse9I AATT 6 cut(s) 147, 416, 608, 617, 1029, 1055
SsiI CCGC 1 cut(s) 462
SspMI CTAG 2 cut(s) 987, 1143
StyD4I CCNGG 3 cut(s) 900, 997, 1013
TaaI ACNGT 3 cut(s) 91, 949, 1155
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 911, 933, 1020
TasI AATT 6 cut(s) 147, 416, 608, 617, 1029, 1055
TatI WGTACW 1 cut(s) 1073
TauI GCSGC 1 cut(s) 465
Tru1I TTAA 4 cut(s) 363, 435, 611, 684
Tru9I TTAA 4 cut(s) 363, 435, 611, 684
TscAI CASTG 4 cut(s) 19, 139, 276, 798
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 3 cut(s) 697, 728, 866
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 7 cut(s) 85, 312, 429, 609, 660, 726, 785
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 4 cut(s) 19, 139, 276, 798
VneI GTGCAC 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 983
XagI CCTNNNNNAGG 1 cut(s) 1116
XapI RAATTY 1 cut(s) 416
XceI RCATGY 2 cut(s) 335, 496
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 2 cut(s) 987, 1143
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.