Rroxscaffold_1G00041960

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000704
Physical Location & Seq
Forward (+)
59964786 .. 59968181
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041960.1

Sequence Viewer

Length: 594 bp
ATGGTGCACAATGTCATTGTAGTAATGGTTGCAGGACATGACACTTCATCTGTTCTGATTACGTTCCTTTTGCGGCTTCTCGCTAATGAACCAGCTGTTTATGCAGCCCTTCTTCAAGAGCAGCAAGAAATTGCTAGAAGCAAATCGGCAGGAGAGTTTCTAACATGGGAAGACCTTGCCAAAATGAAATACACATGGAAAGTAGCACTGGAAACTCTGAGGATGACTCCTCCTGTCTTTGGTGGCTTTAGGACTGCTGTCAAAGATATTGAGTTCGGTGGATTCCACATTCCTAAAGGGCAGATATTCTGGGCTGCTCCTATGACCCACATGGATGATAACATATTCCCGGAGCCATCGAAGTTTGATCCAAGTAGCTTCGACAAGCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGTTTGCCAGGATTGCAATACACCATATGGTAACTCAATTCACTTGGAAGCTATGTGCAGACAATCACTTCAGTAGGGATCTAATGCCTGTACCTACTCAAGGACTGGCCATTGAAATCACGCCTAGAATACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

197

Amino Acids

22.15

Weight (kDa)

6.37

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 174 2.7e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AclWI GGATC 2 cut(s) 362, 540
AcoI YGGCCR 1 cut(s) 561
AcuI CTGAAG 1 cut(s) 508
AfaI GTAC 2 cut(s) 417, 546
AfiI CCNNNNNNNGG 3 cut(s) 239, 425, 554
AgsI TTSAA 2 cut(s) 116, 569
AjnI CCWGG 2 cut(s) 445, 461
AluBI AGCT 3 cut(s) 95, 378, 505
AluI AGCT 3 cut(s) 95, 378, 505
Alw21I GWGCWC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 2 cut(s) 362, 540
AoxI GGCC 1 cut(s) 561
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 3 cut(s) 104, 121, 314
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 116, 133, 301
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 447, 463
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 3 cut(s) 135, 435, 579
BisI GCNGC 4 cut(s) 74, 105, 122, 315
BlsI GCNGC 4 cut(s) 75, 106, 123, 316
Bme1390I CCNGG 3 cut(s) 350, 447, 463
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 354, 432
BmrFI CCNGG 3 cut(s) 350, 447, 463
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 425, 554
Bse1I ACTGG 2 cut(s) 213, 564
BseBI CCWGG 2 cut(s) 447, 463
BseGI GGATG 2 cut(s) 228, 340
BseLI CCNNNNNNNGG 3 cut(s) 239, 425, 554
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 213, 564
BseRI GAGGAG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 3 cut(s) 116, 133, 301
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 239, 425, 554
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 367, 532
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 354, 432
BspPI GGATC 2 cut(s) 362, 540
BsrI ACTGG 2 cut(s) 213, 564
BssMI GATC 2 cut(s) 367, 532
Bst2UI CCWGG 2 cut(s) 447, 463
Bst4CI ACNGT 2 cut(s) 397, 591
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 218
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 228, 340
BstKTI GATC 2 cut(s) 370, 535
BstMBI GATC 2 cut(s) 367, 532
BstMWI GCNNNNNNNGC 2 cut(s) 101, 467
BstNI CCWGG 2 cut(s) 447, 463
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 348, 445, 461
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 116, 133, 301
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 228, 340
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 416, 545
CviAII CATG 4 cut(s) 38, 165, 195, 331
CviJI RGCY 9 cut(s) 76, 95, 107, 246, 314, 355, 378, 505, 563
CviKI_1 RGCY 9 cut(s) 76, 95, 107, 246, 314, 355, 378, 505, 563
CviQI GTAC 2 cut(s) 416, 545
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 369, 534
DpnII GATC 2 cut(s) 367, 532
EaeI YGGCCR 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 445, 461
FaeI CATG 4 cut(s) 41, 168, 198, 334
FaqI GGGAC 1 cut(s) 444
FatI CATG 4 cut(s) 37, 164, 194, 330
FauNDI CATATG 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 74, 105, 122, 315
FokI GGATG 2 cut(s) 235, 347
Fsp4HI GCNGC 4 cut(s) 74, 105, 122, 315
FspBI CTAG 3 cut(s) 135, 435, 579
GluI GCNGC 4 cut(s) 74, 105, 122, 315
HaeIII GGCC 1 cut(s) 563
HapII CCGG 1 cut(s) 350
Hin1II CATG 4 cut(s) 41, 168, 198, 334
HinfI GANTC 2 cut(s) 226, 282
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 57, 219
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 397, 591
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 7, 32, 104, 470, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 467
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 4 cut(s) 41, 168, 198, 334
Kzo9I GATC 2 cut(s) 367, 532
LmnI GCTCC 2 cut(s) 322, 352
Lsp1109I GCAGC 3 cut(s) 116, 133, 301
MaeI CTAG 3 cut(s) 135, 435, 579
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 369, 534
MboI GATC 2 cut(s) 367, 532
MboII GAAGA 2 cut(s) 104, 182
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 2 cut(s) 129, 491
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 213, 240, 419
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 3 cut(s) 350, 447, 463
MvaI CCWGG 2 cut(s) 447, 463
MwoI GCNNNNNNNGC 2 cut(s) 101, 467
NciI CCSGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 480
NdeII GATC 2 cut(s) 367, 532
NlaIII CATG 4 cut(s) 41, 168, 198, 334
NlaIV GGNNCC 2 cut(s) 354, 432
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 2 cut(s) 348, 445
PkrI GCNGC 4 cut(s) 75, 106, 123, 316
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 431
PshAI GACNNNNGTC 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 445, 461
PspGI CCWGG 2 cut(s) 445, 461
PspN4I GGNNCC 2 cut(s) 354, 432
PspPI GGNCC 1 cut(s) 431
PspPPI RGGWCCY 1 cut(s) 431
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 417, 546
RsaNI GTAC 2 cut(s) 416, 545
RseI CAYNNNNRTG 1 cut(s) 333
SatI GCNGC 4 cut(s) 74, 105, 122, 315
Sau3AI GATC 2 cut(s) 367, 532
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 3 cut(s) 350, 447, 463
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 65, 97, 177, 380, 436, 507, 550
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 2 cut(s) 129, 491
SsiI CCGC 1 cut(s) 73
SspMI CTAG 3 cut(s) 135, 435, 579
StyD4I CCNGG 3 cut(s) 348, 445, 461
TaaI ACNGT 2 cut(s) 397, 591
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 359, 381
TasI AATT 2 cut(s) 129, 491
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 282
TscAI CASTG 1 cut(s) 213
TseI GCWGC 3 cut(s) 104, 121, 314
TspDTI ATGAA 3 cut(s) 36, 102, 200
TspRI CASTG 1 cut(s) 213
VneI GTGCAC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 431
XagI CCTNNNNNAGG 1 cut(s) 552
XspI CTAG 3 cut(s) 135, 435, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.