Rh1DG373500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000704
Physical Location & Seq
Forward (+)
59719970 .. 59720251
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG373500.1

Sequence Viewer

Length: 282 bp
ATGGACAGCAACATATTTGAAGATCCAAACAGGTTTGATCCATCACGATTCGAGAACTCGACGAAATCATTTCCTCCGTACACATACATTGCATTCGGAGCAGGCCCGCGAATTTGTCCCGGGGCAGAATTTGCAAGGATTGAAGTGCTGTTAACGATCCATCATTTGTTAACAAAGTACTCATGGACGCAGATGATCAAGGACGAGCCTTTAAGACGTGAACCCTTGCCTTATCCAGCCATGGGACTTCCTGTCAAACTTCACCAAAGGAACGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

93

Amino Acids

10.81

Weight (kDa)

6.82

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 77 9.1e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 1 cut(s) 107
AclWI GGATC 3 cut(s) 17, 32, 151
AcsI RAATTY 2 cut(s) 111, 128
AfaI GTAC 2 cut(s) 80, 179
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 20, 143
AhdI GACNNNNNGTC 1 cut(s) 251
AjiI CACGTC 1 cut(s) 218
AlwI GGATC 3 cut(s) 17, 32, 151
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 111, 128
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 120, 121
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 119
BccI CCATC 2 cut(s) 49, 168
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 2 cut(s) 120, 121
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 120, 121
BmeRI GACNNNNNGTC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 2 cut(s) 120, 121
BpuMI CCSGG 2 cut(s) 120, 121
BsaJI CCNNGG 3 cut(s) 119, 120, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 119, 120, 240
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 102, 258
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 102, 258
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 4 cut(s) 22, 37, 156, 195
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 105
BspFNI CGCG 1 cut(s) 109
BspPI GGATC 3 cut(s) 17, 32, 151
BsrDI GCAATG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 119, 120, 240
BssMI GATC 4 cut(s) 22, 37, 156, 195
BssT1I CCWWGG 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 103, 107
BstDSI CCRYGG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 4 cut(s) 25, 40, 159, 198
BstMBI GATC 4 cut(s) 22, 37, 156, 195
BstMWI GCNNNNNNNGC 2 cut(s) 98, 131
BstSCI CCNGG 2 cut(s) 118, 119
BstUI CGCG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 240
BtrI CACGTC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 103, 107
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 119
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 79, 178
CviAII CATG 2 cut(s) 183, 241
CviJI RGCY 3 cut(s) 105, 208, 239
CviKI_1 RGCY 3 cut(s) 105, 208, 239
CviQI GTAC 2 cut(s) 79, 178
DpnI GATC 4 cut(s) 24, 39, 158, 197
DpnII GATC 4 cut(s) 22, 37, 156, 195
DriI GACNNNNNGTC 1 cut(s) 251
Eam1105I GACNNNNNGTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 186, 244
FaiI YATR 6 cut(s) 14, 85, 184, 242, 278, 280
FaqI GGGAC 2 cut(s) 102, 258
FatI CATG 2 cut(s) 182, 240
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 195
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 186, 244
HincII GTYRAC 2 cut(s) 153, 171
HindII GTYRAC 2 cut(s) 153, 171
HinfI GANTC 1 cut(s) 48
HpaI GTTAAC 2 cut(s) 153, 171
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 4 cut(s) 81, 153, 171, 221
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 45, 52
Hpy8I GTNNAC 4 cut(s) 81, 153, 171, 221
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 92, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 131
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 186, 244
Ksp22I TGATCA 1 cut(s) 195
KspAI GTTAAC 2 cut(s) 153, 171
Kzo9I GATC 4 cut(s) 22, 37, 156, 195
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 16, 87, 133, 249, 264
MaeII ACGT 1 cut(s) 217
MalI GATC 4 cut(s) 24, 39, 158, 197
MboI GATC 4 cut(s) 22, 37, 156, 195
MboII GAAGA 1 cut(s) 32
MflI RGATCY 1 cut(s) 22
MluCI AATT 2 cut(s) 111, 128
MnlI CCTC 1 cut(s) 84
MseI TTAA 3 cut(s) 152, 170, 212
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 120, 121
Mva1269I GAATGC 1 cut(s) 92
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 98, 131
NciI CCSGG 2 cut(s) 120, 121
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 22, 37, 156, 195
NlaIII CATG 2 cut(s) 186, 244
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 2 cut(s) 80, 179
RsaNI GTAC 2 cut(s) 79, 178
SaqAI TTAA 3 cut(s) 152, 170, 212
Sau3AI GATC 4 cut(s) 22, 37, 156, 195
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 120, 121
SetI ASST 2 cut(s) 35, 220
SmaI CCCGGG 1 cut(s) 121
Sse9I AATT 2 cut(s) 111, 128
SsiI CCGC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 118, 119
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 51, 59
TasI AATT 2 cut(s) 111, 128
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 3 cut(s) 152, 170, 212
Tru9I TTAA 3 cut(s) 152, 170, 212
TspGWI ACGGA 1 cut(s) 66
TspMI CCCGGG 1 cut(s) 119
XapI RAATTY 2 cut(s) 111, 128
XmaI CCCGGG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.