Rmu_ssc0000410.1_g000014

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
OG0000704
Physical Location & Seq
Reverse (-)
65182 .. 66271
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000410.1_g000014.1.cds

Sequence Viewer

Length: 744 bp
atgctcaaagatcttatacgcgaaaagagggtacagcttgagcaaaaaagggcttctccacaacaagaccttatcacttgcttccttagcatccgaaatgatgaaggtagagaagaattaacagaattggagatggtgcacaatgtcatggtagtcctggttgcaggacctgacacttcatctgttttgattacgttccttttgcggcttctagctaatgaaccagctgtgtatgctgcccttcttcaagagcaggaagaaatagctagaagcaaatcggcaggagagtttctgacatgggaagaccttgccaaaatgaaatacacatggagagtagcacaggaaactctgaggatgactcctcctgtctttggtggcttcaggaatgctaccaaagattttgagttcggtggattcctcattcctaaagggtggcagatattccgggctgctcctatgacgacccacatggatgataacatattcccagagccatcgaagtttgatccaagtaggttcgacaagcaagcaatagttccaccctacagctttgtaccatttggagggggacctcgaatatgtccaggatatgagtttgctaggatcgaaaccctaattgcaatacaccatatggtaactcaattcacctggaagctatgggcagacaatcacttcagtagggatcaaatgcctgtacctactcaaggactgcccattgaaatcacgcctagaatactgctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

247

Amino Acids

28.34

Weight (kDa)

5.8

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 205
AclWI GGATC 3 cut(s) 500, 611, 690
AcuI CTGAAG 2 cut(s) 364, 658
AfaI GTAC 3 cut(s) 33, 555, 696
AfiI CCNNNNNNNGG 3 cut(s) 371, 563, 704
AgsI TTSAA 2 cut(s) 248, 719
AjnI CCWGG 3 cut(s) 156, 583, 647
AluBI AGCT 6 cut(s) 37, 215, 227, 266, 549, 655
AluI AGCT 6 cut(s) 37, 215, 227, 266, 549, 655
Alw21I GWGCWC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 3 cut(s) 500, 611, 690
AlwNI CAGNNNCTG 1 cut(s) 170
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 236, 449
AspS9I GGNCC 2 cut(s) 167, 569
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 637
AvaII GGWCC 2 cut(s) 167, 569
BaeGI GKGCMC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 223, 436
BccI CCATC 2 cut(s) 127, 502
BciT130I CCWGG 3 cut(s) 158, 585, 649
BcnI CCSGG 1 cut(s) 446
BfaI CTAG 4 cut(s) 212, 267, 600, 729
BfmI CTRYAG 1 cut(s) 544
BglII AGATCT 1 cut(s) 10
BisI GCNGC 3 cut(s) 206, 237, 450
BlsI GCNGC 3 cut(s) 207, 238, 451
Bme1390I CCNGG 4 cut(s) 158, 446, 585, 649
Bme18I GGWCC 2 cut(s) 167, 569
BmgT120I GGNCC 2 cut(s) 167, 569
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 4 cut(s) 158, 446, 585, 649
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 343, 375
Bpu10I CCTNAGC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 59, 687
BpuMI CCSGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 563, 704
BseBI CCWGG 3 cut(s) 158, 585, 649
BseGI GGATG 3 cut(s) 90, 360, 478
BseLI CCNNNNNNNGG 3 cut(s) 371, 563, 704
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 223, 436
Bsh1236I CGCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 3 cut(s) 371, 563, 704
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 4 cut(s) 10, 505, 603, 682
BspACI CCGC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 3 cut(s) 500, 611, 690
BssMI GATC 4 cut(s) 10, 505, 603, 682
Bst2UI CCWGG 3 cut(s) 158, 585, 649
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 2 cut(s) 86, 350
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 90, 360, 478
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 4 cut(s) 13, 508, 606, 685
BstMBI GATC 4 cut(s) 10, 505, 603, 682
BstMWI GCNNNNNNNGC 2 cut(s) 87, 233
BstNI CCWGG 3 cut(s) 158, 585, 649
BstSCI CCNGG 4 cut(s) 156, 444, 583, 647
BstSFI CTRYAG 1 cut(s) 544
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 223, 436
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtsCI GGATG 3 cut(s) 90, 360, 478
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 167, 569
Csp6I GTAC 3 cut(s) 32, 554, 695
CviAII CATG 4 cut(s) 148, 297, 327, 469
CviQI GTAC 3 cut(s) 32, 554, 695
DdeI CTNAG 2 cut(s) 86, 350
DpnI GATC 4 cut(s) 12, 507, 605, 684
DpnII GATC 4 cut(s) 10, 505, 603, 682
Eco47I GGWCC 2 cut(s) 167, 569
Eco57I CTGAAG 2 cut(s) 364, 658
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoO109I RGGNCCY 2 cut(s) 167, 569
EcoRII CCWGG 3 cut(s) 156, 583, 647
FaeI CATG 4 cut(s) 151, 300, 330, 472
FaqI GGGAC 1 cut(s) 582
FatI CATG 4 cut(s) 147, 296, 326, 468
FauNDI CATATG 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 206, 237, 450
FokI GGATG 3 cut(s) 77, 367, 485
Fsp4HI GCNGC 3 cut(s) 206, 237, 450
FspBI CTAG 4 cut(s) 212, 267, 600, 729
GluI GCNGC 3 cut(s) 206, 237, 450
HapII CCGG 1 cut(s) 445
Hin1II CATG 4 cut(s) 151, 300, 330, 472
HinfI GANTC 2 cut(s) 358, 414
HpaII CCGG 1 cut(s) 445
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 95, 294, 351
Hpy188III TCNNGA 2 cut(s) 248, 382
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 98, 251
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 139, 164, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 233
HpyF3I CTNAG 2 cut(s) 86, 350
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 4 cut(s) 151, 300, 330, 472
Kzo9I GATC 4 cut(s) 10, 505, 603, 682
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 2 cut(s) 223, 436
LweI GCATC 1 cut(s) 99
MaeI CTAG 4 cut(s) 212, 267, 600, 729
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 634
MalI GATC 4 cut(s) 12, 507, 605, 684
MboI GATC 4 cut(s) 10, 505, 603, 682
MboII GAAGA 4 cut(s) 125, 236, 269, 314
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 4 cut(s) 116, 125, 615, 641
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 6 cut(s) 21, 345, 372, 428, 557, 582
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 4 cut(s) 158, 446, 585, 649
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 158, 585, 649
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 87, 233
NciI CCSGG 1 cut(s) 446
NdeI CATATG 1 cut(s) 630
NdeII GATC 4 cut(s) 10, 505, 603, 682
NlaIII CATG 4 cut(s) 151, 300, 330, 472
NlaIV GGNNCC 1 cut(s) 570
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 3 cut(s) 207, 238, 451
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 2 cut(s) 167, 569
Psp5II RGGWCCY 2 cut(s) 167, 569
Psp6I CCWGG 3 cut(s) 156, 583, 647
PspGI CCWGG 3 cut(s) 156, 583, 647
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 2 cut(s) 167, 569
PspPPI RGGWCCY 2 cut(s) 167, 569
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 33, 555, 696
RsaNI GTAC 3 cut(s) 32, 554, 695
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 3 cut(s) 206, 237, 450
Sau3AI GATC 4 cut(s) 10, 505, 603, 682
Sau96I GGNCC 2 cut(s) 167, 569
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 4 cut(s) 158, 446, 585, 649
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 544
SinI GGWCC 2 cut(s) 167, 569
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 38, 702
SmoI CTYRAG 2 cut(s) 38, 702
Sse9I AATT 4 cut(s) 116, 125, 615, 641
SsiI CCGC 1 cut(s) 205
SspMI CTAG 4 cut(s) 212, 267, 600, 729
StyD4I CCNGG 4 cut(s) 156, 444, 583, 647
TaiI ACGT 1 cut(s) 197
TaqI TCGA 4 cut(s) 497, 519, 574, 606
TasI AATT 4 cut(s) 116, 125, 615, 641
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 2 cut(s) 236, 449
TspDTI ATGAA 4 cut(s) 117, 168, 234, 332
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 167, 569
XagI CCTNNNNNAGG 1 cut(s) 702
XspI CTAG 4 cut(s) 212, 267, 600, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.