Rorug01G0370500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000704
Physical Location & Seq
Reverse (-)
48469768 .. 48473929
4162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0370500.1

Sequence Viewer

Length: 363 bp
ATGGCGAGAATTTTATACCCATATGGAATGAAATCTCAGACTTGCACAAGAGTGTTGTTCATCACGTATTATTGGCTTCTTCCATGTTGGGGTATCCAAGATCTTCTGAGTGCTAGTTATCTTGGCTCCCTGTCTCACTTCTATGGTTTTGGTTCAGCTTGGTATGCAGCCAGATTAAACAAAATTACATACTTTCCAGCAACTCTTGAACAGAATTTTCTCAAGGGAATGAAAGATCCAAAGCTTGATGGAAATCTAAAGACACAAAGAGAAGAAGGGTCATTAATCAGTGTCAAAGTCAAGTTCTTTTCTAAGCTAGCTGTAGGTAAAGCGAAATACAAGGACGTTTTTTTGGTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

9.64

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 2 cut(s) 9, 214
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 209
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 4 cut(s) 158, 244, 316, 320
AluI AGCT 4 cut(s) 158, 244, 316, 320
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 9, 214
AseI ATTAAT 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 242
BciVI GTATCC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 114, 317
BfmI CTRYAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 104
BglII AGATCT 1 cut(s) 100
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 50, 98
BseXI GCAGC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 100, 235
BspCNI CTCAG 2 cut(s) 49, 99
BspLI GGNNCC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 1 cut(s) 230
BssMI GATC 2 cut(s) 100, 235
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 3 cut(s) 36, 107, 312
BstKTI GATC 2 cut(s) 103, 238
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 100, 235
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 100, 235
BstYI RGATCY 2 cut(s) 100, 235
BsuI GTATCC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 318
CviAII CATG 1 cut(s) 84
CviJI RGCY 7 cut(s) 76, 126, 158, 170, 244, 316, 320
CviKI_1 RGCY 7 cut(s) 76, 126, 158, 170, 244, 316, 320
DdeI CTNAG 3 cut(s) 36, 107, 312
DpnI GATC 2 cut(s) 102, 237
DpnII GATC 2 cut(s) 100, 235
FaeI CATG 1 cut(s) 87
FaiI YATR 7 cut(s) 16, 22, 24, 85, 144, 165, 190
FatI CATG 1 cut(s) 83
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 114, 317
GluI GCNGC 1 cut(s) 168
Hin1II CATG 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 39, 108
Hpy188III TCNNGA 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 269
HpyCH4IV ACGT 2 cut(s) 65, 345
HpyCH4V TGCA 2 cut(s) 45, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 36, 107, 312
HpySE526I ACGT 2 cut(s) 65, 345
Hsp92II CATG 1 cut(s) 87
Kzo9I GATC 2 cut(s) 100, 235
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 143, 184, 210
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 2 cut(s) 114, 317
MaeII ACGT 2 cut(s) 65, 345
MalI GATC 2 cut(s) 102, 237
MboI GATC 2 cut(s) 100, 235
MboII GAAGA 3 cut(s) 71, 95, 284
MflI RGATCY 2 cut(s) 100, 235
MluCI AATT 3 cut(s) 9, 183, 214
MseI TTAA 2 cut(s) 176, 284
MslI CAYNNNNRTG 2 cut(s) 50, 141
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 22
NdeII GATC 2 cut(s) 100, 235
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 50
PkrI GCNGC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 2 cut(s) 100, 235
RseI CAYNNNNRTG 2 cut(s) 50, 141
SaqAI TTAA 2 cut(s) 176, 284
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 100, 235
SetI ASST 7 cut(s) 68, 160, 246, 318, 322, 328, 348
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 50, 141
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 3 cut(s) 9, 183, 214
SspMI CTAG 2 cut(s) 114, 317
TaiI ACGT 2 cut(s) 68, 348
TasI AATT 3 cut(s) 9, 183, 214
Tru1I TTAA 2 cut(s) 176, 284
Tru9I TTAA 2 cut(s) 176, 284
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 44, 49, 245
TspRI CASTG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 284
XapI RAATTY 2 cut(s) 9, 214
XspI CTAG 2 cut(s) 114, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.