Rw5G024620

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000704
Physical Location & Seq
Reverse (-)
34990906 .. 34992834
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024620.1

Sequence Viewer

Length: 1146 bp
ATGAGAAGAAAAAAACCATCAGAAAGGCTCCCTCCAGGCTCGTTAGGACAACCCTTAATAGGCCAGAAAAAATGGCTTGAACAAAGGATAGAAAAGTACGGGCCAGTTTCTAAGATAAGTTTATTTGGCAAGCCAACATTTATATTCACCAGTGATGGGAGCACAATTTCCAGCCAACAAACTAAGTCTATTTGTAGGATTTTGGGGGAATGGAGTATACCTGAGCTGAATGCTGAGTATCACAAACGTGTCAGAAGTGCGCTTATGCTATTCTTGAAGCCTGAGTCACTGAAGCAATATGTGTGGAAAATGGATGAAGAAATCAGACAGCACCTTGAGATGCATTGGCATGCCAAACAACAAGTAACATCATGCATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGCAGAGATGAATTTGTGGAGTGTTTCAAAAAAATGATGCAAGGATTGTGGTCAGTGCCGGTTAACTTGCCCTTCATGCGTTACAACAGCGGCCTCAAGGCAAGCAAGAGGGTTCAAAACATGCTCAAACAACTTATACGCGAAAAGAGGGTACAGCTTGAGCAAAAAAGGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGACATGACACTTCATCTGTTCTGATTACGTTCCTTTTGCGGCTTCTCACTAATGAACCTGCTGCTTATGCAGCCTTCTTCAAGTTTCTAACATGGGAAGACCTTGCCAAAATGAAATACACATGGAAAGTAGTACTGGAAACTCTGAGGATGACTCCTCCTGTCTTTGGTGGCTTTAGGACTGCTGTCAAAGATATATTCTGGGCTGCTCCTATGACCCGCATGGATGATAACATATTCCCGGAGCCATCGAAGTTTGATCCAAGTAGGTTCGACAAGCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGTTTGCCAGGATCGAAACCCTAATTGCAATACACCATATGGTAACTCAATTCACTTGGAAGCTATGTGCAGACAATCACTTCAGTAGGGATCTAATGCCTGTACCTACTCAAGGACTGCCCATTGAAATCACGCCTAGAATACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

381

Amino Acids

44.25

Weight (kDa)

9.77

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 187 - 358 2.1e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 715
AccI GTMKAC 1 cut(s) 217
AccII CGCG 1 cut(s) 585
AciI CCGC 3 cut(s) 534, 688, 868
AclWI GGATC 3 cut(s) 902, 1013, 1092
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 311, 1060
AfaI GTAC 5 cut(s) 98, 597, 783, 957, 1098
AfiI CCNNNNNNNGG 5 cut(s) 59, 156, 815, 965, 1106
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 7 cut(s) 80, 277, 434, 472, 560, 730, 1121
AjnI CCWGG 3 cut(s) 34, 985, 1001
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 3 cut(s) 226, 601, 1057
AluI AGCT 3 cut(s) 226, 601, 1057
Alw21I GWGCWC 2 cut(s) 164, 624
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 3 cut(s) 902, 1013, 1092
AoxI GGCC 3 cut(s) 61, 101, 535
ApaLI GTGCAC 1 cut(s) 620
ApeKI GCWGC 3 cut(s) 710, 719, 854
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 101, 971
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 971
BaeGI GKGCMC 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 2 cut(s) 164, 624
BbvI GCAGC 3 cut(s) 697, 731, 841
BccI CCATC 4 cut(s) 25, 149, 610, 904
BciT130I CCWGG 3 cut(s) 36, 987, 1003
BcnI CCSGG 1 cut(s) 890
BfaI CTAG 2 cut(s) 975, 1131
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 5 cut(s) 535, 689, 711, 720, 855
BlsI GCNGC 5 cut(s) 536, 690, 712, 721, 856
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 4 cut(s) 36, 890, 987, 1003
Bme18I GGWCC 1 cut(s) 971
BmgT120I GGNCC 2 cut(s) 101, 971
BmiI GGNNCC 3 cut(s) 29, 894, 972
BmrFI CCNGG 4 cut(s) 36, 890, 987, 1003
BmsI GCATC 2 cut(s) 330, 471
BoxI GACNNNNGTC 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 753
BplI GAGNNNNNCTC 2 cut(s) 787, 819
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 4 cut(s) 356, 524, 623, 1089
BpuMI CCSGG 1 cut(s) 890
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 156, 815, 965, 1106
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 3 cut(s) 104, 150, 789
BseBI CCWGG 3 cut(s) 36, 987, 1003
BseGI GGATG 4 cut(s) 319, 621, 804, 880
BseLI CCNNNNNNNGG 5 cut(s) 59, 156, 815, 965, 1106
BseMII CTCAG 4 cut(s) 213, 225, 273, 785
BseNI ACTGG 3 cut(s) 104, 150, 789
BseRI GAGGAG 1 cut(s) 795
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 3 cut(s) 697, 731, 841
BsgI GTGCAG 1 cut(s) 1083
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 63, 103, 537
BsiHKAI GWGCWC 2 cut(s) 164, 624
BsiSI CCGG 2 cut(s) 503, 890
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 5 cut(s) 59, 156, 815, 965, 1106
BsmFI GGGAC 1 cut(s) 984
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 63, 103, 537
Bsp1286I GDGCHC 2 cut(s) 164, 624
Bsp143I GATC 3 cut(s) 907, 1005, 1084
BspACI CCGC 3 cut(s) 534, 688, 868
BspANI GGCC 3 cut(s) 63, 103, 537
BspCNI CTCAG 4 cut(s) 214, 226, 274, 786
BspFNI CGCG 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 29, 894, 972
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 3 cut(s) 902, 1013, 1092
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 3 cut(s) 104, 150, 789
BssAI RCCGGY 1 cut(s) 502
BssMI GATC 3 cut(s) 907, 1005, 1084
BssNAI GTATAC 1 cut(s) 218
Bst1107I GTATAC 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 36, 987, 1003
Bst4CI ACNGT 2 cut(s) 937, 1143
BstC8I GCNNGC 5 cut(s) 131, 351, 377, 547, 930
BstDEI CTNAG 6 cut(s) 111, 183, 222, 234, 282, 794
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 4 cut(s) 319, 621, 804, 880
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 910, 1008, 1087
BstMBI GATC 3 cut(s) 907, 1005, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 520, 716, 719
BstNI CCWGG 3 cut(s) 36, 987, 1003
BstNSI RCATGY 3 cut(s) 353, 379, 568
BstPAI GACNNNNGTC 1 cut(s) 833
BstSCI CCNGG 4 cut(s) 34, 888, 985, 1001
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 697, 731, 841
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BstZ17I GTATAC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 63, 103, 537
BtsCI GGATG 4 cut(s) 319, 621, 804, 880
BtsIMutI CAGTG 3 cut(s) 157, 287, 504
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 5 cut(s) 131, 351, 377, 547, 930
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 101, 971
Csp6I GTAC 5 cut(s) 97, 596, 782, 956, 1097
CspCI CAANNNNNGTGG 4 cut(s) 284, 319, 473, 508
CviQI GTAC 5 cut(s) 97, 596, 782, 956, 1097
DdeI CTNAG 6 cut(s) 111, 183, 222, 234, 282, 794
DpnI GATC 3 cut(s) 909, 1007, 1086
DpnII GATC 3 cut(s) 907, 1005, 1084
Eco47I GGWCC 1 cut(s) 971
Eco57I CTGAAG 2 cut(s) 311, 1060
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 971
EcoRII CCWGG 3 cut(s) 34, 985, 1001
EcoT22I ATGCAT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 984
FauI CCCGC 1 cut(s) 875
FauNDI CATATG 1 cut(s) 1032
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 5 cut(s) 535, 689, 711, 720, 855
FokI GGATG 4 cut(s) 326, 628, 811, 887
Fsp4HI GCNGC 5 cut(s) 535, 689, 711, 720, 855
FspBI CTAG 2 cut(s) 975, 1131
GlaI GCGC 1 cut(s) 261
GluI GCNGC 5 cut(s) 535, 689, 711, 720, 855
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 3 cut(s) 63, 103, 537
HapII CCGG 2 cut(s) 503, 890
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 2 cut(s) 284, 802
HpaI GTTAAC 1 cut(s) 508
HpaII CCGG 2 cut(s) 503, 890
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 3 cut(s) 218, 508, 622
Hpy188I TCNGA 5 cut(s) 22, 254, 326, 672, 795
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 3 cut(s) 218, 508, 622
HpyAV CCTTC 2 cut(s) 526, 733
HpyCH4III ACNGT 2 cut(s) 937, 1143
HpyCH4IV ACGT 2 cut(s) 247, 677
HpyCH4V TGCA 8 cut(s) 343, 375, 484, 622, 647, 719, 1022, 1064
HpyF10VI GCNNNNNNNGC 3 cut(s) 520, 716, 719
HpyF3I CTNAG 6 cut(s) 111, 183, 222, 234, 282, 794
HpySE526I ACGT 2 cut(s) 247, 677
HspAI GCGC 1 cut(s) 260
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 3 cut(s) 907, 1005, 1084
LmnI GCTCC 4 cut(s) 33, 159, 862, 892
Lsp1109I GCAGC 3 cut(s) 697, 731, 841
LweI GCATC 2 cut(s) 330, 471
MaeI CTAG 2 cut(s) 975, 1131
MaeII ACGT 2 cut(s) 247, 677
MaeIII GTNAC 4 cut(s) 285, 364, 524, 1036
MalI GATC 3 cut(s) 909, 1007, 1086
MboI GATC 3 cut(s) 907, 1005, 1084
MboII GAAGA 5 cut(s) 18, 329, 400, 718, 758
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 2 cut(s) 164, 624
MluCI AATT 4 cut(s) 165, 455, 1017, 1043
MlyI GAGTC 2 cut(s) 293, 796
Mph1103I ATGCAT 2 cut(s) 345, 377
MseI TTAA 3 cut(s) 56, 402, 507
MslI CAYNNNNRTG 2 cut(s) 246, 348
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 2 cut(s) 503, 890
MspR9I CCNGG 4 cut(s) 36, 890, 987, 1003
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 3 cut(s) 36, 987, 1003
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 520, 716, 719
NciI CCSGG 1 cut(s) 890
NdeI CATATG 1 cut(s) 1032
NdeII GATC 3 cut(s) 907, 1005, 1084
NlaIV GGNNCC 3 cut(s) 29, 894, 972
NmuCI GTSAC 1 cut(s) 285
NsiI ATGCAT 2 cut(s) 345, 377
NspI RCATGY 3 cut(s) 353, 379, 568
OliI CACNNNNGTG 1 cut(s) 246
PaeI GCATGC 2 cut(s) 353, 379
PctI GAATGC 1 cut(s) 235
PfoI TCCNGGA 2 cut(s) 888, 985
PkrI GCNGC 5 cut(s) 536, 690, 712, 721, 856
PleI GAGTC 2 cut(s) 292, 796
PpsI GAGTC 2 cut(s) 292, 796
PpuMI RGGWCCY 1 cut(s) 971
PshAI GACNNNNGTC 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 971
Psp6I CCWGG 3 cut(s) 34, 985, 1001
PspGI CCWGG 3 cut(s) 34, 985, 1001
PspN4I GGNNCC 3 cut(s) 29, 894, 972
PspPI GGNCC 2 cut(s) 101, 971
PspPPI RGGWCCY 1 cut(s) 971
PsuI RGATCY 1 cut(s) 1084
RsaI GTAC 5 cut(s) 98, 597, 783, 957, 1098
RsaNI GTAC 5 cut(s) 97, 596, 782, 956, 1097
RseI CAYNNNNRTG 2 cut(s) 246, 348
SaqAI TTAA 3 cut(s) 56, 402, 507
SatI GCNGC 5 cut(s) 535, 689, 711, 720, 855
Sau3AI GATC 3 cut(s) 907, 1005, 1084
Sau96I GGNCC 2 cut(s) 101, 971
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 2 cut(s) 293, 796
ScrFI CCNGG 4 cut(s) 36, 890, 987, 1003
SduI GDGCHC 2 cut(s) 164, 624
SfaNI GCATC 2 cut(s) 330, 471
SinI GGWCC 1 cut(s) 971
SmiMI CAYNNNNRTG 2 cut(s) 246, 348
SmlI CTYRAG 4 cut(s) 335, 539, 602, 1104
SmoI CTYRAG 4 cut(s) 335, 539, 602, 1104
SphI GCATGC 2 cut(s) 353, 379
Sse9I AATT 4 cut(s) 165, 455, 1017, 1043
SsiI CCGC 3 cut(s) 534, 688, 868
SspMI CTAG 2 cut(s) 975, 1131
StyD4I CCNGG 4 cut(s) 34, 888, 985, 1001
TaaI ACNGT 2 cut(s) 937, 1143
TaiI ACGT 2 cut(s) 250, 680
TaqI TCGA 3 cut(s) 899, 921, 1008
TasI AATT 4 cut(s) 165, 455, 1017, 1043
TatI WGTACW 1 cut(s) 781
TauI GCSGC 2 cut(s) 537, 691
Tru1I TTAA 3 cut(s) 56, 402, 507
Tru9I TTAA 3 cut(s) 56, 402, 507
TscAI CASTG 3 cut(s) 157, 294, 504
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 3 cut(s) 710, 719, 854
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 7 cut(s) 330, 401, 468, 508, 651, 717, 776
TspRI CASTG 3 cut(s) 157, 294, 504
VneI GTGCAC 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 971
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 1 cut(s) 455
XceI RCATGY 3 cut(s) 353, 379, 568
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 2 cut(s) 975, 1131
ZrmI AGTACT 1 cut(s) 783
Zsp2I ATGCAT 2 cut(s) 345, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.