Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000704

Physical Location & Seq

Genomic Coordinates Reverse (-)

58562401 .. 58565002

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0421600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACTTTTCCTTTGGATAATCATACAATGGAAGAGAAGGAAGAGGGAGTAAATACTATTGCGAAGGTGAATTTGAAGGGTAGAATGAATGATGGTCGCCGAAGATACGGATCAAGTGATTCTTTTTTCCCTGGTCTGGTTGATGATGTAGCTCTGCATTGCCTTGCTTGGACTCCTAGATCAGCTTATGCTTCACTTTCATGTACTAATACAAGGTTTAATAAGTTAATTAGAAGTGAGTATTTGTATGGGTTGAGGAAGCAGGTGGGAATTGAGGAGCATTGGGTGTATCTGGTTTGTGATTTGAGAGGGTGGGAAGCGTATGATCCGATGAGAAATAAGTGGATGACATTGCCTAAGGTGCCTTGTGATGAGTGTTTCAACCATGCAGACAAGGAGTCTTTGGCTGTGGGAACTCAGTTGCTGGTTTTTGGTCGTGAATTACTGGATTTTGCTATTTGGAAGTATAGTGTGATACATCATAGTTGGGTTAAATGTGAGGGAATGAGCAAGCCTCGCTGTTTGTTCGGGTCTGGCAGCCTTGGTTCTATTGCTATTGTTGCGGGCGGGAGTGATATAAATGGAAATGTTTTGAAGTCAGCAGAGTTATATGATTCTATATCTGGTAGGTGGAAAGTCTTACCTGATTTGCACACACCGCGTAGATTGTGCTCTGGTTTCTTCATGGACAACAAGTTCTATGTCATTGGTGGGATGTCAAGTCCCTTTGATTCACTGACTTGTGGCGAGGAGTATGATCTGGAGACAGGGAAATGGAGGAAAATTGAGGGTATGTATCCATATGTCAATAGGGCAGCGCAGGCTCCTCCTCTTATCGCAGTAGTGGATAACCAACTATATGCGGTCGAGTATGAAACCAATATGGTTAAGAAGTATGACAAGGAGAAGAACACTTGGGATGTTATAGGAAGACTTCCAGTTAGGGCTGACTTTTCAAATGGCTGGGGCCTGGCTTTCAAGGCTTGTGGAAAGAAACTTCTTGTTGTGGGTGGCCAAAGAGGTCCAGAAGGCGAAAGTATTGTCCTGAACTCTTGGTGTCCAAAGTCAGGGGTTAAGAATGGTACCTTGGATTGGAAGGTGATTGGTCAAAAAGACAATGTGGGTGTGTTTGTGTACAACTGTGCAGTTATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

386

Amino Acids

43.38

Weight (kDa)

8.13

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	153 - 265	7.5e-09	Calicin, beta-propeller domain
Kelch_FKB95	PF25210	187 - 260	2.2e-06	FKB95, Kelch-repeats domain
Kelch_1	PF01344	220 - 265	8.6e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22430 FvH4_3g22440 FvH4_3g40490 FvH4_3g40490 FvH4_5g35780 FvH4_7g25900
malus_domestica	MD03G1051800.v1.1 MD03G1205100.v1.1 MD07G1233500.v1.1 MD11G1053900.v1.1
prunus_persica	Prupe.4G210900_v2.0.a1 Prupe.4G211000_v2.0.a1 Prupe.6G041200_v2.0.a1 Prupe.6G041300_v2.0.a1 Prupe.6G041300_v2.0.a1
pyrus_communis	pycom03g04120 pycom03g15490 pycom03g15500 pycom07g21130 pycom11g04350
rosa_chinensis	RchiOBHm_Chr1g0372211 RchiOBHm_Chr5g0039101 RchiOBHm_Chr5g0039121 RchiOBHm_Chr5g0039131 RchiOBHm_Chr5g0073161 RchiOBHm_Chr5g0073171
rosa_laevigata	RLG00000026915 RLG00000033893 RLG00000033895 RLG00000033896 RLG00000036370
rosa_multiflora	Rmu_sc0000533.1_g000009 Rmu_sc0000533.1_g000016 Rmu_sc0001755.1_g000018 Rmu_sc0001887.1_g000008 Rmu_ssc0000410.1_g000014
rosa_roxburghii	Rroxscaffold_1G00008020 Rroxscaffold_1G00040350 Rroxscaffold_1G00041960 Rroxscaffold_1G00041980 Rroxscaffold_1G00042000 Rroxscaffold_1G00042010 Rroxscaffold_4G00285140
rosa_rugosa	Rorug01G0370500 Rorug05G0176500 Rorug05G0176600 Rorug05G0176800 Rorug05G0421600 Rorug05G0421700 Rorug05G0421700
rosa_samantha	Rh1AG378800 Rh1BG342200 Rh1CG355900 Rh1DG373300 Rh1DG373500 Rh5AG262900 Rh5AG263100 Rh5AG478600 Rh5BG267700 Rh5BG267900 Rh5BG268100 Rh5BG499300 Rh5CG300400 Rh5CG300700 Rh5CG300800 Rh5CG522500 Rh5DG274200 Rh5DG511400 Rh5DG517800
rosa_wichuraiana	Rw0G001980 Rw1G033330 Rw5G024580 Rw5G024620 Rw5G044470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	1082
AccB1I	GGYRCC	2 cut(s)	361, 1082
AccII	CGCG	1 cut(s)	661
AciI	CCGC	4 cut(s)	563, 567, 659, 863
AclWI	GGATC	2 cut(s)	118, 320
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	3 cut(s)	205, 1084, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
AgsI	TTSAA	5 cut(s)	76, 382, 595, 957, 979
AhdI	GACNNNNNGTC	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	130, 969
AjuI	GAANNNNNNNTTGG	2 cut(s)	1070, 1102
AloI	GAACNNNNNNTCC	2 cut(s)	680, 712
AluBI	AGCT	2 cut(s)	152, 185
AluI	AGCT	2 cut(s)	152, 185
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	2 cut(s)	118, 320
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	2 cut(s)	967, 1012
ApeKI	GCWGC	2 cut(s)	537, 815
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 1026, 1058
Asp718I	GGTACC	1 cut(s)	1082
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	2 cut(s)	967, 1022
AsuHPI	GGTGA	2 cut(s)	79, 1111
AvaII	GGWCC	1 cut(s)	1022
AxyI	CCTNAGG	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	1014
BanI	GGYRCC	2 cut(s)	361, 1082
BbsI	GAAGAC	1 cut(s)	937
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	549, 827
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	132, 971
BciVI	GTATCC	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	807
BisI	GCNGC	2 cut(s)	538, 816
BlsI	GCNGC	2 cut(s)	539, 817
Bme1390I	CCNGG	2 cut(s)	132, 971
Bme18I	GGWCC	1 cut(s)	1022
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	967, 1022
BmiI	GGNNCC	4 cut(s)	363, 825, 968, 1084
BmrFI	CCNGG	2 cut(s)	132, 971
BpiI	GAAGAC	1 cut(s)	937
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	1 cut(s)	782
BsaBI	GATNNNNATC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	130, 541, 1086
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
Bse1I	ACTGG	2 cut(s)	450, 938
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	157, 350
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	132, 971
BseDI	CCNNGG	3 cut(s)	130, 541, 1086
BseGI	GGATG	3 cut(s)	351, 720, 925
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
BseMI	GCAATG	2 cut(s)	157, 350
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	450, 938
BseRI	GAGGAG	4 cut(s)	290, 764, 816, 819
BseXI	GCAGC	2 cut(s)	549, 827
BseYI	CCCAGC	1 cut(s)	963
Bsh1236I	CGCG	1 cut(s)	661
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	969, 1014
BshNI	GGYRCC	2 cut(s)	361, 1082
BsiEI	CGRYCG	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	3 cut(s)	136, 1067, 1092
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	2 cut(s)	969, 1014
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp1407I	TGTACA	1 cut(s)	1134
Bsp143I	GATC	4 cut(s)	110, 179, 325, 757
BspACI	CCGC	4 cut(s)	563, 567, 659, 863
BspANI	GGCC	2 cut(s)	969, 1014
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	363, 825, 968, 1084
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	118, 320
BspT107I	GGYRCC	2 cut(s)	361, 1082
BsrDI	GCAATG	2 cut(s)	157, 350
BsrGI	TGTACA	1 cut(s)	1134
BsrI	ACTGG	2 cut(s)	450, 938
BssECI	CCNNGG	3 cut(s)	130, 541, 1086
BssMI	GATC	4 cut(s)	110, 179, 325, 757
BssT1I	CCWWGG	2 cut(s)	541, 1086
Bst2UI	CCWGG	2 cut(s)	132, 971
Bst4CI	ACNGT	1 cut(s)	1142
Bst6I	CTCTTC	2 cut(s)	27, 36
BstAUI	TGTACA	1 cut(s)	1134
BstC8I	GCNNGC	3 cut(s)	512, 565, 822
BstDEI	CTNAG	2 cut(s)	357, 417
BstF5I	GGATG	3 cut(s)	351, 720, 925
BstFNI	CGCG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	4 cut(s)	113, 182, 328, 760
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	4 cut(s)	110, 179, 325, 757
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
BstNI	CCWGG	2 cut(s)	132, 971
BstSCI	CCNGG	2 cut(s)	130, 969
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	549, 827
BstV2I	GAAGAC	1 cut(s)	937
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	807
BsuRI	GGCC	2 cut(s)	969, 1014
BtsCI	GGATG	3 cut(s)	351, 720, 925
BtsIMutI	CAGTG	1 cut(s)	734
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	512, 565, 822
CaiI	CAGNNNCTG	1 cut(s)	424
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	967, 1022
Csp6I	GTAC	3 cut(s)	204, 1083, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	3 cut(s)	201, 386, 685
CviQI	GTAC	3 cut(s)	204, 1083, 1135
DdeI	CTNAG	2 cut(s)	357, 417
DpnI	GATC	4 cut(s)	112, 181, 327, 759
DpnII	GATC	4 cut(s)	110, 179, 325, 757
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	1012
Eam1104I	CTCTTC	2 cut(s)	27, 36
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	2 cut(s)	27, 36
Eco130I	CCWWGG	2 cut(s)	541, 1086
Eco47I	GGWCC	1 cut(s)	1022
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	130, 969
EcoT14I	CCWWGG	2 cut(s)	541, 1086
ErhI	CCWWGG	2 cut(s)	541, 1086
FaeI	CATG	3 cut(s)	204, 389, 688
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	200, 385, 684
FauI	CCCGC	2 cut(s)	556, 560
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	538, 816
FokI	GGATG	3 cut(s)	358, 727, 932
Fsp4HI	GCNGC	2 cut(s)	538, 816
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	2 cut(s)	538, 816
GsaI	CCCAGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	969, 1014
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	3 cut(s)	204, 389, 688
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HinfI	GANTC	5 cut(s)	119, 172, 398, 614, 731
HphI	GGTGA	2 cut(s)	79, 1111
Hpy166II	GTNNAC	1 cut(s)	1135
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	437, 761, 1025, 1045
Hpy8I	GTNNAC	1 cut(s)	1135
HpyAV	CCTTC	5 cut(s)	31, 58, 70, 1022, 1090
HpyCH4III	ACNGT	1 cut(s)	1142
HpyCH4V	TGCA	4 cut(s)	157, 389, 652, 1145
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
HpyF3I	CTNAG	2 cut(s)	357, 417
Hsp92II	CATG	3 cut(s)	204, 389, 688
HspAI	GCGC	1 cut(s)	818
KpnI	GGTACC	1 cut(s)	1086
Kzo9I	GATC	4 cut(s)	110, 179, 325, 757
LmnI	GCTCC	2 cut(s)	277, 829
Lsp1109I	GCAGC	2 cut(s)	549, 827
MaeI	CTAG	1 cut(s)	177
MalI	GATC	4 cut(s)	112, 181, 327, 759
MboI	GATC	4 cut(s)	110, 179, 325, 757
MboII	GAAGA	6 cut(s)	44, 53, 114, 673, 919, 942
MhlI	GDGCHC	1 cut(s)	674
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	5 cut(s)	70, 228, 270, 440, 783
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	2 cut(s)	166, 407
Mox20I	TGGCCA	1 cut(s)	1014
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	5 cut(s)	219, 227, 492, 888, 1074
MslI	CAYNNNNRTG	1 cut(s)	199
Msp20I	TGGCCA	1 cut(s)	1014
MspR9I	CCNGG	2 cut(s)	132, 971
MvaI	CCWGG	2 cut(s)	132, 971
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	361, 516, 560, 658, 821, 980
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	4 cut(s)	110, 179, 325, 757
NlaIII	CATG	3 cut(s)	204, 389, 688
NlaIV	GGNNCC	4 cut(s)	363, 825, 968, 1084
PaqCI	CACCTGC	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	119, 614, 731
PkrI	GCNGC	2 cut(s)	539, 817
PleI	GAGTC	2 cut(s)	166, 406
PpsI	GAGTC	2 cut(s)	166, 406
Psp6I	CCWGG	2 cut(s)	130, 969
PspFI	CCCAGC	1 cut(s)	963
PspGI	CCWGG	2 cut(s)	130, 969
PspN4I	GGNNCC	4 cut(s)	363, 825, 968, 1084
PspPI	GGNCC	2 cut(s)	967, 1022
PstNI	CAGNNNCTG	1 cut(s)	424
RsaI	GTAC	3 cut(s)	205, 1084, 1136
RsaNI	GTAC	3 cut(s)	204, 1083, 1135
RseI	CAYNNNNRTG	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	219, 227, 492, 888, 1074
SatI	GCNGC	2 cut(s)	538, 816
Sau3AI	GATC	4 cut(s)	110, 179, 325, 757
Sau96I	GGNCC	2 cut(s)	967, 1022
SchI	GAGTC	2 cut(s)	166, 407
ScrFI	CCNGG	2 cut(s)	132, 971
SduI	GDGCHC	1 cut(s)	674
SinI	GGWCC	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	70, 228, 270, 440, 783
SsiI	CCGC	4 cut(s)	563, 567, 659, 863
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	130, 969
StyI	CCWWGG	2 cut(s)	541, 1086
TaaI	ACNGT	1 cut(s)	1142
TaqI	TCGA	1 cut(s)	867
TasI	AATT	5 cut(s)	70, 228, 270, 440, 783
TatI	WGTACW	2 cut(s)	203, 1134
TfiI	GAWTC	3 cut(s)	119, 614, 731
Tru1I	TTAA	5 cut(s)	219, 227, 492, 888, 1074
Tru9I	TTAA	5 cut(s)	219, 227, 492, 888, 1074
TscAI	CASTG	1 cut(s)	741
TseI	GCWGC	2 cut(s)	537, 815
TspDTI	ATGAA	4 cut(s)	101, 189, 673, 888
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.