RchiOBHm_Chr5g0039131

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000704
Physical Location & Seq
Reverse (-)
33883259 .. 33885406
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31771

Sequence Viewer

Length: 1599 bp
ATGTATCTGAGGTATATGATTGGCACTTGGCAATTGGGAGTTGGTCATGTTGCCCTTGAGCCTTTCTTTCCCAGACTCCCATTTATACTCAACTGTCACTCCTTTCAATCTACAAAGGTTTGCAAACTCTCTCTCTCTCAAACAAAGCCTCACAAAGCCATGATGACTACTCTTTTCACAATTTTCCTCTTCCTCATTCCCATATACCTTCTCCTAAAGAGCAGAAAAAAATCATTAGAAAGGCTTCCTCCAGGCTCATTAGGACTGCCCCTAATAGGCCAGAGCCTTGATTTTCTCCGAGCAATGCGTGCCAACACTGCAGAGGATTGGCTTGAACAAAGGATCAGAAAGTATGGTCCAGTTTCAAAGCTAAGTCTCTTTGGCAAGCCAACAGTCTTCATCCATGGACAAGCTGCAAATAAGTTTATATTCACCAGTGATGGGAGCACCATTTCAGCCCAACAAACCGAGTCTATTCGTAGGATTTTGGGGGAACGGAGTATATCCGAGTTAAGTGCTGAGGATCACAAACGTGTCAGAAGTGCACTTATGCTATTCATGAAGCCCGAGTCACTGAAGCAATATGTGGCGAAAATGGATGAAGAAATCAAGAAGCACCTTGAGATGCATTGGCATGGCAAACAACAAGTTACAGTCTTGCCCCGGATGAAGAACCTCACATTTAACATAATATGCTCTCTTCTTTTTGGGCTTGAACGAGGAACTCGCAGAGATGAACTCCTGGAGTGTTTCCAAAAAATGATGCAAGGAATGTGGTCACTGCCGATCAACTTGCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAACCATGCTCAAAGATCTTATACGCGAAAAGAGGGTACAGCTTGAGGAAAAAAGGGCTTCTCCACAACAAGACCTTATCACTTGCTTCCTTAGCATCCGAAATGATGAAGGTAGAGAAGAATTAACAGAATTGGAGATGGTGCACAATGTCATGGTAGTCCTGGTTGCAGGACATGACACTTCATCTGTTTTGATTACGTTCCTTTTGCGGCTTCTAGCTAATGAACCAGCTGTGTATGCTGCCCTTCTTCAAGGTACGCCTAAACAACAGGAAGAAATAGCTAGAAGCAAATCGGCAGGAGAGTTTCTGACATGGGAAGACCTTGCCAAAATGAAATACACATGGAGAGTAGCACAGGAAACTCTAAGGATGACTCCTCCTGTCTTTGGTGGCTTCAGGAATGCTACCAAAGATTTTGAGTTCGGTGGATTCCTCATTCCTAAAGGGTGGCAGATATTCTGGGCTGCTCCTATGACCCACATGGATGATAACATATTCCCAGAGCCATCGAAGTTTGATCCAAGTAGGTTCGACAAGCAAGCAATTGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTCGAATATGTCCAGGATATGAGTTTGCCAGGATCGAAACCCTAATTGCAATACACCATATGGTAACTCAATTCACCTGGAAGCTATGTGCAGACAATCACTTCAGTAGGGATCTAATGCCTGTACCTACTCAAGGACTGCCCATTGAAATCACGCCTAGAATACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

532

Amino Acids

61.16

Weight (kDa)

9.42

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 83 - 509 7.5e-72 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 805, 867
AciI CCGC 1 cut(s) 1051
AclWI GGATC 5 cut(s) 350, 531, 1355, 1466, 1545
AcuI CTGAAG 3 cut(s) 596, 1222, 1513
AfaI GTAC 4 cut(s) 879, 1099, 1410, 1551
AfiI CCNNNNNNNGG 5 cut(s) 275, 441, 1229, 1418, 1559
AflIII ACRYGT 2 cut(s) 532, 803
AgsI TTSAA 7 cut(s) 107, 335, 366, 716, 842, 1094, 1574
AjnI CCWGG 6 cut(s) 250, 741, 1002, 1438, 1454, 1502
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 7 cut(s) 370, 413, 883, 1061, 1073, 1124, 1510
AluI AGCT 7 cut(s) 370, 413, 883, 1061, 1073, 1124, 1510
Alw21I GWGCWC 3 cut(s) 449, 547, 987
Alw26I GTCTC 1 cut(s) 380
Alw44I GTGCAC 2 cut(s) 543, 983
AlwI GGATC 5 cut(s) 350, 531, 1355, 1466, 1545
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 277
ApaLI GTGCAC 2 cut(s) 543, 983
ApeKI GCWGC 4 cut(s) 413, 816, 1082, 1307
Asp700I GAANNNNTTC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 356, 1424
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 424, 1492
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 2 cut(s) 356, 1424
BaeGI GKGCMC 2 cut(s) 547, 987
BbsI GAAGAC 2 cut(s) 388, 1167
Bbv12I GWGCWC 3 cut(s) 449, 547, 987
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 400, 828, 1069, 1294
BccI CCATC 3 cut(s) 434, 973, 1357
BcgI CGANNNNNNTGC 4 cut(s) 497, 531, 775, 809
BciT130I CCWGG 6 cut(s) 252, 743, 1004, 1440, 1456, 1504
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 3 cut(s) 1058, 1125, 1584
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 856
BisI GCNGC 5 cut(s) 414, 817, 1052, 1083, 1308
BlsI GCNGC 5 cut(s) 415, 818, 1053, 1084, 1309
Bme1390I CCNGG 7 cut(s) 252, 664, 743, 1004, 1440, 1456, 1504
Bme18I GGWCC 2 cut(s) 356, 1424
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 2 cut(s) 356, 1424
BmiI GGNNCC 1 cut(s) 1425
BmrFI CCNGG 7 cut(s) 252, 664, 743, 1004, 1440, 1456, 1504
BmsI GCATC 3 cut(s) 615, 753, 945
BpiI GAAGAC 2 cut(s) 388, 1167
BplI GAGNNNNNCTC 2 cut(s) 723, 755
BpmI CTGGAG 2 cut(s) 234, 764
Bpu10I CCTNAGC 2 cut(s) 519, 932
BpuEI CTTGAG 5 cut(s) 77, 641, 806, 905, 1542
BpuMI CCSGG 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 403, 662
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 441, 1229, 1418, 1559
Bse1I ACTGG 2 cut(s) 359, 435
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 6 cut(s) 252, 743, 1004, 1440, 1456, 1504
BseDI CCNNGG 2 cut(s) 403, 662
BseGI GGATG 6 cut(s) 399, 604, 672, 936, 1218, 1333
BseLI CCNNNNNNNGG 5 cut(s) 275, 441, 1229, 1418, 1559
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 359, 435
BseRI GAGGAG 1 cut(s) 1209
BseSI GKGCMC 2 cut(s) 547, 987
BseXI GCAGC 4 cut(s) 400, 828, 1069, 1294
BsgI GTGCAG 1 cut(s) 1536
Bsh1236I CGCG 2 cut(s) 805, 867
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 3 cut(s) 449, 547, 987
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 1 cut(s) 1437
BslI CCNNNNNNNGG 5 cut(s) 275, 441, 1229, 1418, 1559
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 1437
BsmI GAATGC 1 cut(s) 1249
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 449, 547, 987
Bsp143I GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
Bsp19I CCATGG 1 cut(s) 403
BspACI CCGC 1 cut(s) 1051
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 2 cut(s) 805, 867
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 1425
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 5 cut(s) 350, 531, 1355, 1466, 1545
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 2 cut(s) 359, 435
BssECI CCNNGG 2 cut(s) 403, 662
BssMI GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 6 cut(s) 252, 743, 1004, 1440, 1456, 1504
Bst4CI ACNGT 4 cut(s) 95, 394, 655, 1596
Bst6I CTCTTC 2 cut(s) 194, 705
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 4 cut(s) 309, 386, 829, 1383
BstDEI CTNAG 5 cut(s) 8, 371, 519, 932, 1208
BstDSI CCRYGG 1 cut(s) 403
BstENI CCTNNNNNAGG 1 cut(s) 1557
BstF5I GGATG 6 cut(s) 399, 604, 672, 936, 1218, 1333
BstFNI CGCG 2 cut(s) 805, 867
BstKTI GATC 7 cut(s) 345, 526, 789, 859, 1363, 1461, 1540
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
BstMWI GCNNNNNNNGC 5 cut(s) 308, 317, 802, 933, 1079
BstNI CCWGG 6 cut(s) 252, 743, 1004, 1440, 1456, 1504
BstSCI CCNGG 7 cut(s) 250, 662, 741, 1002, 1438, 1454, 1502
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 2 cut(s) 547, 987
BstUI CGCG 2 cut(s) 805, 867
BstV1I GCAGC 4 cut(s) 400, 828, 1069, 1294
BstV2I GAAGAC 2 cut(s) 388, 1167
BstX2I RGATCY 2 cut(s) 856, 1537
BstYI RGATCY 2 cut(s) 856, 1537
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 6 cut(s) 399, 604, 672, 936, 1218, 1333
BtsI GCAGTG 2 cut(s) 315, 779
BtsIMutI CAGTG 4 cut(s) 315, 442, 572, 779
Cac8I GCNNGC 4 cut(s) 309, 386, 829, 1383
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 356, 1424
Csp6I GTAC 4 cut(s) 878, 1098, 1409, 1550
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviQI GTAC 4 cut(s) 878, 1098, 1409, 1550
DdeI CTNAG 5 cut(s) 8, 371, 519, 932, 1208
DpnI GATC 7 cut(s) 344, 525, 788, 858, 1362, 1460, 1539
DpnII GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
Eam1104I CTCTTC 2 cut(s) 194, 705
EarI CTCTTC 2 cut(s) 194, 705
Eco130I CCWWGG 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 356, 1424
Eco57I CTGAAG 3 cut(s) 596, 1222, 1513
Eco88I CYCGRG 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 1557
EcoO109I RGGNCCY 1 cut(s) 1424
EcoRII CCWGG 6 cut(s) 250, 741, 1002, 1438, 1454, 1502
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 403
FaqI GGGAC 1 cut(s) 1437
FauNDI CATATG 1 cut(s) 1485
Fnu4HI GCNGC 5 cut(s) 414, 817, 1052, 1083, 1308
FokI GGATG 6 cut(s) 386, 611, 679, 923, 1225, 1340
Fsp4HI GCNGC 5 cut(s) 414, 817, 1052, 1083, 1308
FspBI CTAG 3 cut(s) 1058, 1125, 1584
GluI GCNGC 5 cut(s) 414, 817, 1052, 1083, 1308
GsuI CTGGAG 2 cut(s) 234, 764
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 664
HinfI GANTC 5 cut(s) 75, 470, 569, 1216, 1272
HpaII CCGG 1 cut(s) 664
HphI GGTGA 2 cut(s) 424, 1492
Hpy166II GTNNAC 2 cut(s) 545, 985
Hpy188I TCNGA 7 cut(s) 9, 299, 347, 508, 539, 941, 1152
Hpy188III TCNNGA 3 cut(s) 559, 610, 1240
Hpy8I GTNNAC 2 cut(s) 545, 985
HpyAV CCTTC 4 cut(s) 218, 808, 944, 1097
HpyCH4III ACNGT 4 cut(s) 95, 394, 655, 1596
HpyCH4IV ACGT 2 cut(s) 532, 1040
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 317, 802, 933, 1079
HpyF3I CTNAG 5 cut(s) 8, 371, 519, 932, 1208
HpySE526I ACGT 2 cut(s) 532, 1040
Kzo9I GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
LmnI GCTCC 2 cut(s) 444, 1315
Lsp1109I GCAGC 4 cut(s) 400, 828, 1069, 1294
LweI GCATC 3 cut(s) 615, 753, 945
MaeI CTAG 3 cut(s) 1058, 1125, 1584
MaeII ACGT 2 cut(s) 532, 1040
MaeIII GTNAC 6 cut(s) 95, 570, 649, 777, 806, 1489
MalI GATC 7 cut(s) 344, 525, 788, 858, 1362, 1460, 1539
MboI GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
MboII GAAGA 9 cut(s) 181, 388, 614, 682, 692, 971, 1082, 1127, 1172
MfeI CAATTG 2 cut(s) 32, 1386
MflI RGATCY 2 cut(s) 856, 1537
MhlI GDGCHC 3 cut(s) 449, 547, 987
MluCI AATT 7 cut(s) 32, 180, 962, 971, 1386, 1470, 1496
MluI ACGCGT 1 cut(s) 803
MlyI GAGTC 4 cut(s) 69, 479, 578, 1210
Mph1103I ATGCAT 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 3 cut(s) 512, 684, 965
MslI CAYNNNNRTG 3 cut(s) 531, 633, 1326
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 7 cut(s) 252, 664, 743, 1004, 1440, 1456, 1504
MunI CAATTG 2 cut(s) 32, 1386
Mva1269I GAATGC 1 cut(s) 1249
MvaI CCWGG 6 cut(s) 252, 743, 1004, 1440, 1456, 1504
MvnI CGCG 2 cut(s) 805, 867
MwoI GCNNNNNNNGC 5 cut(s) 308, 317, 802, 933, 1079
NciI CCSGG 1 cut(s) 664
NcoI CCATGG 1 cut(s) 403
NdeI CATATG 1 cut(s) 1485
NdeII GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
NlaIV GGNNCC 1 cut(s) 1425
NmuCI GTSAC 3 cut(s) 95, 570, 777
NsiI ATGCAT 1 cut(s) 630
OliI CACNNNNGTG 1 cut(s) 531
PagI TCATGA 1 cut(s) 558
PctI GAATGC 1 cut(s) 1249
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 1272
PfoI TCCNGGA 2 cut(s) 741, 1438
PkrI GCNGC 5 cut(s) 415, 818, 1053, 1084, 1309
PleI GAGTC 4 cut(s) 69, 478, 577, 1210
PpsI GAGTC 4 cut(s) 69, 478, 577, 1210
PpuMI RGGWCCY 1 cut(s) 1424
Psp5II RGGWCCY 1 cut(s) 1424
Psp6I CCWGG 6 cut(s) 250, 741, 1002, 1438, 1454, 1502
PspGI CCWGG 6 cut(s) 250, 741, 1002, 1438, 1454, 1502
PspN4I GGNNCC 1 cut(s) 1425
PspPI GGNCC 2 cut(s) 356, 1424
PspPPI RGGWCCY 1 cut(s) 1424
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 856, 1537
PvuII CAGCTG 1 cut(s) 1073
RsaI GTAC 4 cut(s) 879, 1099, 1410, 1551
RsaNI GTAC 4 cut(s) 878, 1098, 1409, 1550
RseI CAYNNNNRTG 3 cut(s) 531, 633, 1326
SaqAI TTAA 3 cut(s) 512, 684, 965
SatI GCNGC 5 cut(s) 414, 817, 1052, 1083, 1308
Sau3AI GATC 7 cut(s) 342, 523, 786, 856, 1360, 1458, 1537
Sau96I GGNCC 2 cut(s) 356, 1424
SchI GAGTC 4 cut(s) 69, 479, 578, 1210
ScrFI CCNGG 7 cut(s) 252, 664, 743, 1004, 1440, 1456, 1504
SduI GDGCHC 3 cut(s) 449, 547, 987
SfaNI GCATC 3 cut(s) 615, 753, 945
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 2 cut(s) 356, 1424
SmiMI CAYNNNNRTG 3 cut(s) 531, 633, 1326
SmlI CTYRAG 5 cut(s) 56, 620, 821, 884, 1557
SmoI CTYRAG 5 cut(s) 56, 620, 821, 884, 1557
Sse9I AATT 7 cut(s) 32, 180, 962, 971, 1386, 1470, 1496
SsiI CCGC 1 cut(s) 1051
SspMI CTAG 3 cut(s) 1058, 1125, 1584
StyD4I CCNGG 7 cut(s) 250, 662, 741, 1002, 1438, 1454, 1502
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 4 cut(s) 95, 394, 655, 1596
TaiI ACGT 2 cut(s) 535, 1043
TaqI TCGA 4 cut(s) 1352, 1374, 1429, 1461
TasI AATT 7 cut(s) 32, 180, 962, 971, 1386, 1470, 1496
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 1 cut(s) 1272
Tru1I TTAA 3 cut(s) 512, 684, 965
Tru9I TTAA 3 cut(s) 512, 684, 965
TscAI CASTG 4 cut(s) 322, 442, 579, 786
TseFI GTSAC 3 cut(s) 95, 570, 777
TseI GCWGC 4 cut(s) 413, 816, 1082, 1307
Tsp45I GTSAC 3 cut(s) 95, 570, 777
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 4 cut(s) 322, 442, 579, 786
VneI GTGCAC 2 cut(s) 543, 983
VpaK11BI GGWCC 2 cut(s) 356, 1424
XagI CCTNNNNNAGG 1 cut(s) 1557
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 3 cut(s) 1058, 1125, 1584
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.