Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000704

Physical Location & Seq

Genomic Coordinates Reverse (-)

33577790 .. 33579509

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAACTCCCTTTTCGCAGTTTTACTCTTCCTCATTCCCATATTCCTTCTCCTTACGAGAAGAAAAAAGTCATCCGATAGACTTCCGCCGGGATCATTAGGATTACCCCTGATAGGCCAGAGCCTTGGTCTTCTCCGAGCCATGCGTGCCAACACTGCTGAGAAATGGCTTGAACAAAGGATAAAAAAATATGGTCCAGTTTCGAAGCTAAGTCTCTTTGGCAAGCCAACAGTCTTCATCCACGGACAAGCTGCAAACAAGTTTGTATTCACCAGTGATGGGAGCACCATTTCCAGCCAACAGACTGAGTCTATTCGTAGGATTTTGGGGGAACGGAGTATATTTGAGCTGAGTGCCGAGGATCACAAGCGTGTAAGGAGTGCTCTTATGCTGTTTTTAAAGCCCGAGTCACTGAAGCAATATGTGGGGAAAATGGATGAAGAAATCAGGGAGCACCTTGAAATGCATTGGCATGGAAAACAACAAGTAACAGTCTTGCCCCTGATGAAGAACCTCACGTTCAACATAATATGCTCTCTACTTTTTGGGCTTGAACGAGGAACCCGCAGAGACGAATTCGTGGAGTGTTTCCAAACAATGATAGAAGGAATGTGGTCAGTGCCGGTTAACTTTCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAACATGATCAAGCAACTTATACGTGAAAAGAGGGTAGAGCTTCAGCAAAAAAAAGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTCCGCATCCGAAATGGTGAAGGCAAAGAAGAATTAACAGAATTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGACATGACACTTCATCTGTTCTGATTACGTTCCTTTTGCGGCTTCTAGCTAATGAACCAGTTGTTTATGCATCCCTTCTTCAAGAGCAGGAAGAAATAGCTAGAAGCAAATCGGCAGGAGAGTTTCTAACATGGGAAGACCTTGCCAAAATGAAATACACATGGAGAGTAGCACAGGAAACACTGAGGATGACTCCTCCTGTCTTTGGTGGCTTCAGGAATGCTATCAAAGATATTGAGTTCGGTGGATTCCTCATTCCTAAAGGGTGGCAGGTAAGTTCAAATTTACACAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

382

Amino Acids

43.76

Weight (kDa)

9.68

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	29 - 380	1.7e-50	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22430 FvH4_3g22440 FvH4_3g40490 FvH4_3g40490 FvH4_5g35780 FvH4_7g25900
malus_domestica	MD03G1051800.v1.1 MD03G1205100.v1.1 MD07G1233500.v1.1 MD11G1053900.v1.1
prunus_persica	Prupe.4G210900_v2.0.a1 Prupe.4G211000_v2.0.a1 Prupe.6G041200_v2.0.a1 Prupe.6G041300_v2.0.a1 Prupe.6G041300_v2.0.a1
pyrus_communis	pycom03g04120 pycom03g15490 pycom03g15500 pycom07g21130 pycom11g04350
rosa_chinensis	RchiOBHm_Chr1g0372211 RchiOBHm_Chr5g0039101 RchiOBHm_Chr5g0039121 RchiOBHm_Chr5g0039131 RchiOBHm_Chr5g0073161 RchiOBHm_Chr5g0073171
rosa_laevigata	RLG00000026915 RLG00000033893 RLG00000033895 RLG00000033896 RLG00000036370
rosa_multiflora	Rmu_sc0000533.1_g000009 Rmu_sc0000533.1_g000016 Rmu_sc0001755.1_g000018 Rmu_sc0001887.1_g000008 Rmu_ssc0000410.1_g000014
rosa_roxburghii	Rroxscaffold_1G00008020 Rroxscaffold_1G00040350 Rroxscaffold_1G00041960 Rroxscaffold_1G00041980 Rroxscaffold_1G00042000 Rroxscaffold_1G00042010 Rroxscaffold_4G00285140
rosa_rugosa	Rorug01G0370500 Rorug05G0176500 Rorug05G0176600 Rorug05G0176800 Rorug05G0421600 Rorug05G0421700 Rorug05G0421700
rosa_samantha	Rh1AG378800 Rh1BG342200 Rh1CG355900 Rh1DG373300 Rh1DG373500 Rh5AG262900 Rh5AG263100 Rh5AG478600 Rh5BG267700 Rh5BG267900 Rh5BG268100 Rh5BG499300 Rh5CG300400 Rh5CG300700 Rh5CG300800 Rh5CG522500 Rh5DG274200 Rh5DG511400 Rh5DG517800
rosa_wichuraiana	Rw0G001980 Rw1G033330 Rw5G024580 Rw5G024620 Rw5G044470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1111
AccII	CGCG	1 cut(s)	643
AciI	CCGC	4 cut(s)	86, 565, 772, 889
AclWI	GGATC	2 cut(s)	100, 369
AcsI	RAATTY	2 cut(s)	575, 1132
AcuI	CTGAAG	3 cut(s)	434, 707, 1048
AfiI	CCNNNNNNNGG	3 cut(s)	113, 279, 1055
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	173, 461, 523, 554, 680, 932, 1131
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	7 cut(s)	208, 251, 349, 721, 737, 899, 950
AluI	AGCT	7 cut(s)	208, 251, 349, 721, 737, 899, 950
Alw21I	GWGCWC	4 cut(s)	287, 385, 456, 825
Alw26I	GTCTC	2 cut(s)	218, 564
Alw44I	GTGCAC	1 cut(s)	821
AlwI	GGATC	2 cut(s)	100, 369
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	821
ApeKI	GCWGC	2 cut(s)	251, 654
ApoI	RAATTY	2 cut(s)	575, 1132
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	262, 797
AsuII	TTCGAA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	825
BbsI	GAAGAC	3 cut(s)	122, 226, 993
Bbv12I	GWGCWC	4 cut(s)	287, 385, 456, 825
BbvI	GCAGC	2 cut(s)	238, 666
BccI	CCATC	2 cut(s)	272, 811
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	218, 564
BfaI	CTAG	2 cut(s)	896, 951
BfuAI	ACCTGC	1 cut(s)	1111
BisI	GCNGC	3 cut(s)	252, 655, 890
BlsI	GCNGC	3 cut(s)	253, 656, 891
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	783, 929
BpiI	GAAGAC	3 cut(s)	122, 226, 993
BplI	GAGNNNNNCTC	2 cut(s)	1027, 1059
Bpu14I	TTCGAA	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	124, 241, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 279, 1055
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	3 cut(s)	197, 273, 908
BseDI	CCNNGG	3 cut(s)	124, 241, 357
BseGI	GGATG	6 cut(s)	71, 237, 442, 774, 920, 1044
BseLI	CCNNNNNNNGG	3 cut(s)	113, 279, 1055
BseMII	CTCAG	4 cut(s)	150, 297, 341, 1025
BseNI	ACTGG	3 cut(s)	197, 273, 908
BseRI	GAGGAG	1 cut(s)	1035
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	2 cut(s)	238, 666
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	1 cut(s)	117
BsiHKAI	GWGCWC	4 cut(s)	287, 385, 456, 825
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	89, 623
BslI	CCNNNNNNNGG	3 cut(s)	113, 279, 1055
BsmAI	GTCTC	2 cut(s)	218, 564
BsmBI	CGTCTC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	4 cut(s)	287, 385, 456, 825
Bsp143I	GATC	3 cut(s)	92, 361, 687
BspACI	CCGC	4 cut(s)	86, 565, 772, 889
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	4 cut(s)	151, 298, 342, 1026
BspFNI	CGCG	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	1111
BspPI	GGATC	2 cut(s)	100, 369
BspT104I	TTCGAA	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	197, 273, 908
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	124, 241, 357
BssMI	GATC	3 cut(s)	92, 361, 687
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	232, 493
Bst6I	CTCTTC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	147, 224, 667
BstDEI	CTNAG	5 cut(s)	159, 209, 306, 350, 1034
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	6 cut(s)	71, 237, 442, 774, 920, 1044
BstFNI	CGCG	1 cut(s)	643
BstKTI	GATC	3 cut(s)	95, 364, 690
BstMAI	GTCTC	2 cut(s)	218, 564
BstMBI	GATC	3 cut(s)	92, 361, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 155, 771
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	825
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	238, 666
BstV2I	GAAGAC	3 cut(s)	122, 226, 993
BstXI	CCANNNNNNTGG	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	6 cut(s)	71, 237, 442, 774, 920, 1044
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	5 cut(s)	153, 280, 410, 624, 1031
BveI	ACCTGC	1 cut(s)	1111
Cac8I	GCNNGC	3 cut(s)	147, 224, 667
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	8 cut(s)	142, 473, 685, 832, 841, 854, 981, 1011
DdeI	CTNAG	5 cut(s)	159, 209, 306, 350, 1034
DpnI	GATC	3 cut(s)	94, 363, 689
DpnII	GATC	3 cut(s)	92, 361, 687
DraI	TTTAAA	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	434, 707, 1048
Eco88I	CYCGRG	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	2 cut(s)	468, 922
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	8 cut(s)	145, 476, 688, 835, 844, 857, 984, 1014
FatI	CATG	8 cut(s)	141, 472, 684, 831, 840, 853, 980, 1010
FauI	CCCGC	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	252, 655, 890
FokI	GGATG	6 cut(s)	58, 224, 449, 761, 907, 1051
Fsp4HI	GCNGC	3 cut(s)	252, 655, 890
FspBI	CTAG	2 cut(s)	896, 951
GluI	GCNGC	3 cut(s)	252, 655, 890
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	89, 623
Hin1II	CATG	8 cut(s)	145, 476, 688, 835, 844, 857, 984, 1014
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	4 cut(s)	308, 407, 1042, 1098
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	89, 623
HphI	GGTGA	2 cut(s)	262, 797
Hpy166II	GTNNAC	2 cut(s)	628, 823
Hpy188I	TCNGA	4 cut(s)	76, 137, 779, 873
Hpy188III	TCNNGA	2 cut(s)	932, 1066
Hpy8I	GTNNAC	2 cut(s)	628, 823
HpyAV	CCTTC	5 cut(s)	56, 599, 646, 782, 935
HpyCH4III	ACNGT	2 cut(s)	232, 493
HpyCH4IV	ACGT	3 cut(s)	518, 703, 878
HpyCH4V	TGCA	5 cut(s)	254, 466, 823, 848, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 155, 771
HpyF3I	CTNAG	5 cut(s)	159, 209, 306, 350, 1034
HpySE526I	ACGT	3 cut(s)	518, 703, 878
Hsp92II	CATG	8 cut(s)	145, 476, 688, 835, 844, 857, 984, 1014
Ksp22I	TGATCA	1 cut(s)	687
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	92, 361, 687
LmnI	GCTCC	2 cut(s)	282, 451
Lsp1109I	GCAGC	2 cut(s)	238, 666
LweI	GCATC	2 cut(s)	783, 929
MaeI	CTAG	2 cut(s)	896, 951
MaeII	ACGT	3 cut(s)	518, 703, 878
MaeIII	GTNAC	3 cut(s)	408, 487, 644
MalI	GATC	3 cut(s)	94, 363, 689
MboI	GATC	3 cut(s)	92, 361, 687
MhlI	GDGCHC	4 cut(s)	287, 385, 456, 825
MluCI	AATT	4 cut(s)	575, 800, 809, 1132
MluI	ACGCGT	1 cut(s)	641
MlyI	GAGTC	3 cut(s)	317, 416, 1036
Mph1103I	ATGCAT	2 cut(s)	468, 922
MseI	TTAA	3 cut(s)	398, 627, 803
MslI	CAYNNNNRTG	2 cut(s)	369, 471
MspI	CCGG	2 cut(s)	89, 623
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	1075
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	3 cut(s)	146, 155, 771
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	92, 361, 687
NlaIII	CATG	8 cut(s)	145, 476, 688, 835, 844, 857, 984, 1014
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	408
NsiI	ATGCAT	2 cut(s)	468, 922
NspV	TTCGAA	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	369
PctI	GAATGC	1 cut(s)	1075
PfeI	GAWTC	1 cut(s)	1098
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	253, 656, 891
PleI	GAGTC	3 cut(s)	316, 415, 1036
PpsI	GAGTC	3 cut(s)	316, 415, 1036
Ppu21I	YACGTR	1 cut(s)	704
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	369, 471
SaqAI	TTAA	3 cut(s)	398, 627, 803
SatI	GCNGC	3 cut(s)	252, 655, 890
Sau3AI	GATC	3 cut(s)	92, 361, 687
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	3 cut(s)	317, 416, 1036
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	4 cut(s)	287, 385, 456, 825
SfaNI	GCATC	2 cut(s)	783, 929
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	369, 471
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	575, 800, 809, 1132
SsiI	CCGC	4 cut(s)	86, 565, 772, 889
SspMI	CTAG	2 cut(s)	896, 951
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	232, 493
TaiI	ACGT	3 cut(s)	521, 706, 881
TaqI	TCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	575, 800, 809, 1132
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	1 cut(s)	1098
Tru1I	TTAA	3 cut(s)	398, 627, 803
Tru9I	TTAA	3 cut(s)	398, 627, 803
TscAI	CASTG	5 cut(s)	160, 280, 417, 624, 1038
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	2 cut(s)	251, 654
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	7 cut(s)	17, 226, 453, 521, 852, 918, 1016
TspGWI	ACGGA	2 cut(s)	258, 349
TspRI	CASTG	5 cut(s)	160, 280, 417, 624, 1038
Tth111I	GACNNNGTC	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	575, 1132
XspI	CTAG	2 cut(s)	896, 951
Zsp2I	ATGCAT	2 cut(s)	468, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.