Rh5CG522500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000704
Physical Location & Seq
Forward (+)
73305381 .. 73309133
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG522500.1

Sequence Viewer

Length: 948 bp
ATGGCTTTCATTGCAGTAATTGCAGTCACTTTGGTTGTAGCTTTCCTCCTTTCGAAGATTCTGTCGAAGGGTCGCCGAGAGAGCAAAAATCTCCCGGGAGGTTCTCTGGGGTATCCCTTAATAGGAGAGACATTAAGCTTTCTTCAAGCGCAGAAGCAAGATCGAGGTCCTCAATGGCTGGAAGAAAGAATAGCAAAACATGGGCCAGTGTTCAAAACGTGTTTGATGGGTTCCCCAACTGTGATTGTTATAGGTCAAGCAGGGAACAAGTTTATACTTGGTGCTGAAGATGATGTTCTTGCTGCCAAACAACCTCCCACCTTGTTAGCCATTGGAGGAAAACAGAGTATATTTGAACTTACAGGATCAAGGTACAGGTTGGTAAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCAGGGGGGTCTTGTTTGAGGACTTTTCATTAGCCTTCAAAGCAACCTGGTCTCTTCCTATTAATTTCCCTGGCACTGTTTATCGGCGAGGCCTAAGAGCTAGGGCAAGAATTGTGGATTCGATTTTGCCAATACTAAAGGAGAGAAGGGAGGAAATTTCAAAGGGGAATTTAAGCCCTACAAGTGATGTGTTTTCTAGCTTTCTAGCTTTGAGAGATGAAAACCAAGAACCAGTTTCTGATAATCTGATTATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCACAGACTCTGAGATCTACAAAAAAGTTTTACAAGGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

315

Amino Acids

34.94

Weight (kDa)

9.48

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 312 7.2e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 2 cut(s) 729, 742
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 7 cut(s) 146, 214, 356, 409, 425, 613, 735
AjnI CCWGG 3 cut(s) 575, 620, 643
AluBI AGCT 8 cut(s) 41, 138, 402, 523, 674, 774, 782, 901
AluI AGCT 8 cut(s) 41, 138, 402, 523, 674, 774, 782, 901
Alw26I GTCTC 2 cut(s) 122, 630
AlwI GGATC 1 cut(s) 373
AlwNI CAGNNNCTG 2 cut(s) 812, 914
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 203, 664
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 2 cut(s) 729, 742
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AseI ATTAAT 2 cut(s) 452, 636
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 167, 203
AsuC2I CCSGG 2 cut(s) 95, 96
AsuHPI GGTGA 3 cut(s) 409, 502, 832
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 220, 436
BciT130I CCWGG 3 cut(s) 577, 622, 645
BciVI GTATCC 1 cut(s) 123
BcnI CCSGG 2 cut(s) 95, 96
BcoDI GTCTC 2 cut(s) 122, 630
BfaI CTAG 3 cut(s) 675, 771, 779
BfuI GTATCC 1 cut(s) 123
BglII AGATCT 1 cut(s) 918
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 5 cut(s) 95, 96, 577, 622, 645
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 167, 203
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 5 cut(s) 95, 96, 577, 622, 645
BmsI GCATC 2 cut(s) 548, 555
BpiI GAAGAC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 95, 96
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 94, 576, 643
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 3 cut(s) 206, 806, 855
Bse3DI GCAATG 2 cut(s) 9, 399
BseBI CCWGG 3 cut(s) 577, 622, 645
BseDI CCNNGG 3 cut(s) 94, 576, 643
BseGI GGATG 2 cut(s) 546, 571
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 9, 399
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 3 cut(s) 206, 806, 855
BseXI GCAGC 1 cut(s) 289
BshFI GGCC 2 cut(s) 205, 666
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 122, 630
BsnI GGCC 2 cut(s) 205, 666
Bso31I GGTCTC 1 cut(s) 630
BsoBI CYCGRG 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 160, 365, 918
BspANI GGCC 2 cut(s) 205, 666
BspCNI CTCAG 1 cut(s) 907
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 630
BsrDI GCAATG 2 cut(s) 9, 399
BsrI ACTGG 3 cut(s) 206, 806, 855
BssECI CCNNGG 3 cut(s) 94, 576, 643
BssMI GATC 3 cut(s) 160, 365, 918
Bst2UI CCWGG 3 cut(s) 577, 622, 645
Bst4CI ACNGT 2 cut(s) 241, 652
Bst6I CTCTTC 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 668, 881, 915
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 2 cut(s) 546, 571
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 163, 368, 921
BstMAI GTCTC 2 cut(s) 122, 630
BstMBI GATC 3 cut(s) 160, 365, 918
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 81, 614
BstNI CCWGG 3 cut(s) 577, 622, 645
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 5 cut(s) 93, 94, 575, 620, 643
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 205, 666
BtsCI GGATG 2 cut(s) 546, 571
BtsIMutI CAGTG 2 cut(s) 213, 648
CaiI CAGNNNCTG 2 cut(s) 812, 914
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 167, 203
Cfr9I CCCGGG 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 620
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 4 cut(s) 200, 463, 514, 860
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 668, 881, 915
DpnI GATC 3 cut(s) 162, 367, 920
DpnII GATC 3 cut(s) 160, 365, 918
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 666
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 575, 620, 643
FaeI CATG 4 cut(s) 203, 466, 517, 863
FatI CATG 4 cut(s) 199, 462, 513, 859
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 2 cut(s) 533, 578
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 675, 771, 779
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 2 cut(s) 205, 666
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 203, 466, 517, 863
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 2 cut(s) 136, 521
HinfI GANTC 3 cut(s) 58, 692, 911
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 409, 502, 832
Hpy166II GTNNAC 1 cut(s) 906
Hpy188I TCNGA 3 cut(s) 814, 822, 916
Hpy188III TCNNGA 3 cut(s) 406, 457, 860
Hpy8I GTNNAC 1 cut(s) 906
HpyAV CCTTC 3 cut(s) 61, 619, 714
HpyCH4III ACNGT 2 cut(s) 241, 652
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 14, 23
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 81, 614
HpyF3I CTNAG 3 cut(s) 668, 881, 915
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 4 cut(s) 203, 466, 517, 863
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 3 cut(s) 160, 365, 918
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 548, 555
MabI ACCWGGT 1 cut(s) 620
MaeI CTAG 3 cut(s) 675, 771, 779
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 4 cut(s) 25, 465, 508, 838
MalI GATC 3 cut(s) 162, 367, 920
MboI GATC 3 cut(s) 160, 365, 918
MboII GAAGA 8 cut(s) 67, 134, 194, 299, 413, 529, 620, 869
MflI RGATCY 1 cut(s) 918
MluCI AATT 7 cut(s) 18, 449, 637, 684, 729, 742, 832
MlyI GAGTC 1 cut(s) 905
MnlI CCTC 9 cut(s) 56, 92, 158, 180, 324, 329, 586, 656, 718
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
MslI CAYNNNNRTG 1 cut(s) 845
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 5 cut(s) 95, 96, 577, 622, 645
MvaI CCWGG 3 cut(s) 577, 622, 645
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 81, 614
NciI CCSGG 2 cut(s) 95, 96
NdeII GATC 3 cut(s) 160, 365, 918
NlaIII CATG 4 cut(s) 203, 466, 517, 863
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 3 cut(s) 25, 508, 838
NspV TTCGAA 1 cut(s) 53
PagI TCATGA 1 cut(s) 859
PceI AGGCCT 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 58, 692
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 905
PpsI GAGTC 1 cut(s) 905
PpuMI RGGWCCY 1 cut(s) 167
PshBI ATTAAT 2 cut(s) 452, 636
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 3 cut(s) 575, 620, 643
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 3 cut(s) 575, 620, 643
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 167, 203
PspPPI RGGWCCY 1 cut(s) 167
PstNI CAGNNNCTG 2 cut(s) 812, 914
PsuI RGATCY 1 cut(s) 918
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 845
SaqAI TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 3 cut(s) 160, 365, 918
Sau96I GGNCC 2 cut(s) 167, 203
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 5 cut(s) 95, 96, 577, 622, 645
SexAI ACCWGGT 1 cut(s) 620
SfaNI GCATC 2 cut(s) 548, 555
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 845
Sse9I AATT 7 cut(s) 18, 449, 637, 684, 729, 742, 832
SseBI AGGCCT 1 cut(s) 666
SspMI CTAG 3 cut(s) 675, 771, 779
StuI AGGCCT 1 cut(s) 666
StyD4I CCNGG 5 cut(s) 93, 94, 575, 620, 643
TaaI ACNGT 2 cut(s) 241, 652
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 53, 65, 163, 695
TasI AATT 7 cut(s) 18, 449, 637, 684, 729, 742, 832
TfiI GAWTC 2 cut(s) 58, 692
Tru1I TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
Tru9I TTAA 6 cut(s) 119, 134, 452, 531, 636, 746
TscAI CASTG 2 cut(s) 213, 655
TseFI GTSAC 3 cut(s) 25, 508, 838
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 3 cut(s) 25, 508, 838
TspDTI ATGAA 3 cut(s) 530, 591, 807
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 2 cut(s) 213, 655
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 2 cut(s) 452, 636
XapI RAATTY 2 cut(s) 729, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmaI CCCGGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 3 cut(s) 675, 771, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.