Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000704

Physical Location & Seq

Genomic Coordinates Reverse (-)

10185042 .. 10186696

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCAGAGACTCTGAGATCTACAAAAAAGTTTTACAAGAACAAATAGACATTATAAGTAAGAGAGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATGATTCCTCCTGTGTTTGGAAGCTTTAGAAAAATACTCAAAGACACTCAATATGGTGGCTATGACATTCCCAAAGGATGGCAGGTGTTTTGGGCGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCGAGATTTGAAAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCATTCACACTTGCCCTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCACAACCATCCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTTCCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGAATTCCTAAATTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

206

Amino Acids

24.14

Weight (kDa)

8.52

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 177	4.9e-47	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22430 FvH4_3g22440 FvH4_3g40490 FvH4_3g40490 FvH4_5g35780 FvH4_7g25900
malus_domestica	MD03G1051800.v1.1 MD03G1205100.v1.1 MD07G1233500.v1.1 MD11G1053900.v1.1
prunus_persica	Prupe.4G210900_v2.0.a1 Prupe.4G211000_v2.0.a1 Prupe.6G041200_v2.0.a1 Prupe.6G041300_v2.0.a1 Prupe.6G041300_v2.0.a1
pyrus_communis	pycom03g04120 pycom03g15490 pycom03g15500 pycom07g21130 pycom11g04350
rosa_chinensis	RchiOBHm_Chr1g0372211 RchiOBHm_Chr5g0039101 RchiOBHm_Chr5g0039121 RchiOBHm_Chr5g0039131 RchiOBHm_Chr5g0073161 RchiOBHm_Chr5g0073171
rosa_laevigata	RLG00000026915 RLG00000033893 RLG00000033895 RLG00000033896 RLG00000036370
rosa_multiflora	Rmu_sc0000533.1_g000009 Rmu_sc0000533.1_g000016 Rmu_sc0001755.1_g000018 Rmu_sc0001887.1_g000008 Rmu_ssc0000410.1_g000014
rosa_roxburghii	Rroxscaffold_1G00008020 Rroxscaffold_1G00040350 Rroxscaffold_1G00041960 Rroxscaffold_1G00041980 Rroxscaffold_1G00042000 Rroxscaffold_1G00042010 Rroxscaffold_4G00285140
rosa_rugosa	Rorug01G0370500 Rorug05G0176500 Rorug05G0176600 Rorug05G0176800 Rorug05G0421600 Rorug05G0421700 Rorug05G0421700
rosa_samantha	Rh1AG378800 Rh1BG342200 Rh1CG355900 Rh1DG373300 Rh1DG373500 Rh5AG262900 Rh5AG263100 Rh5AG478600 Rh5BG267700 Rh5BG267900 Rh5BG268100 Rh5BG499300 Rh5CG300400 Rh5CG300700 Rh5CG300800 Rh5CG522500 Rh5DG274200 Rh5DG511400 Rh5DG517800
rosa_wichuraiana	Rw0G001980 Rw1G033330 Rw5G024580 Rw5G024620 Rw5G044470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AccB7I	CCANNNNNTGG	2 cut(s)	300, 499
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	603, 611
AfiI	CCNNNNNNNGG	5 cut(s)	239, 300, 431, 499, 575
AgsI	TTSAA	2 cut(s)	386, 476
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	2 cut(s)	76, 246
AluI	AGCT	2 cut(s)	76, 246
Alw26I	GTCTC	2 cut(s)	78, 584
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	318
ApoI	RAATTY	2 cut(s)	603, 611
AsuHPI	GGTGA	2 cut(s)	7, 514
AxyI	CCTNAGG	1 cut(s)	534
BccI	CCATC	4 cut(s)	294, 382, 497, 577
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	78, 584
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	451, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 300, 431, 499, 575
Bse1I	ACTGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	451, 573
BseGI	GGATG	4 cut(s)	228, 305, 489, 569
BseLI	CCNNNNNNNGG	5 cut(s)	239, 300, 431, 499, 575
BseMII	CTCAG	2 cut(s)	81, 525
BseNI	ACTGG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	320
BslI	CCNNNNNNNGG	5 cut(s)	239, 300, 431, 499, 575
BsmAI	GTCTC	2 cut(s)	78, 584
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	584
Bsp143I	GATC	3 cut(s)	93, 370, 591
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	82, 526
BspHI	TCATGA	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	451, 573
BssMI	GATC	3 cut(s)	93, 370, 591
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	56, 90, 534
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	228, 305, 489, 569
BstKTI	GATC	3 cut(s)	96, 373, 594
BstMAI	GTCTC	2 cut(s)	78, 584
BstMBI	GATC	3 cut(s)	93, 370, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	4 cut(s)	228, 305, 489, 569
BveI	ACCTGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	5 cut(s)	35, 165, 195, 334, 574
CviJI	RGCY	9 cut(s)	29, 47, 60, 76, 160, 246, 282, 320, 400
CviKI_1	RGCY	9 cut(s)	29, 47, 60, 76, 160, 246, 282, 320, 400
DdeI	CTNAG	3 cut(s)	56, 90, 534
DpnI	GATC	3 cut(s)	95, 372, 593
DpnII	GATC	3 cut(s)	93, 370, 591
Eco130I	CCWWGG	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	5 cut(s)	38, 168, 198, 337, 577
FatI	CATG	5 cut(s)	34, 164, 194, 333, 573
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	4 cut(s)	235, 312, 476, 556
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	38, 168, 198, 337, 577
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	2 cut(s)	86, 226
HphI	GGTGA	2 cut(s)	7, 514
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	35, 81, 378, 589
Hpy8I	GTNNAC	1 cut(s)	554
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	56, 90, 534
Hsp92II	CATG	5 cut(s)	38, 168, 198, 337, 577
Kzo9I	GATC	3 cut(s)	93, 370, 591
LpnPI	CCDG	9 cut(s)	43, 94, 155, 246, 290, 438, 465, 509, 546
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	13, 502, 519
MalI	GATC	3 cut(s)	95, 372, 593
MboI	GATC	3 cut(s)	93, 370, 591
MboII	GAAGA	3 cut(s)	44, 161, 164
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	5 cut(s)	7, 402, 496, 603, 611
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	136, 213, 240, 417, 425, 491, 529
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	93, 370, 591
NlaIII	CATG	5 cut(s)	38, 168, 198, 337, 577
NmuCI	GTSAC	3 cut(s)	13, 502, 519
PagI	TCATGA	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	2 cut(s)	300, 499
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	93, 370, 591
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	6 cut(s)	20, 78, 248, 309, 436, 528
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	5 cut(s)	7, 402, 496, 603, 611
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	573
TaqI	TCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	7, 402, 496, 603, 611
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	13, 502, 519
Tsp45I	GTSAC	3 cut(s)	13, 502, 519
TspDTI	ATGAA	2 cut(s)	200, 350
Van91I	CCANNNNNTGG	2 cut(s)	300, 499
XapI	RAATTY	2 cut(s)	603, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.