Rh5BG267900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000704
Physical Location & Seq
Reverse (-)
33473411 .. 33474880
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG267900.1

Sequence Viewer

Length: 912 bp
ATGCTATTCTTGAAGCCTGAGTCACTGAAGCAATATGTGTGGAAAATGGATGAAGAAATCAGGAAGCACCTTGAGATGCACTGGCATGGCAAACAACAAGTAACAGTTATGCCTCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAAAGAGGAACTCGGAGAGATGAATTTTTGGAGTGTTTTGAAAAGATGATGCAAGGATTGTGGTCAGTGCCGGTCAACTTGCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAAAATGCTCAAAGAACTTATACGCGAAAGGAGGGTACAACTTGATCAAAAAAGGGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGGAATCATGAAGGTAAAGAAGAATTAACAGAGTTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGGCATGATACTTCGGCTATTCTTATTACGTTCCTTTTGCGGATTCTAGCTAATGAACCAGCAGTGTATGCTGCCCTTCATCAAGAGCAGGAAGAAATAGCTAGAACCAAATTGGCAGGAGAATTTTTAACATGGGAAGATCTTGCCAAAATGAAATACACATGGAGTGTAGCACTGGAAACTCTGAGAATGATTCCTCCTTCCTTTGGTAGCTTTAGGACAGCTGTCAAAGATATTGAGTTCGGTGGATTCCACATTCCTAAAGGGTGGCAGATATTCTGGGCTACTCCTATGACCCACATGGATGATAGAATATTTCCAGAGCCATCGAAGTTTGATCCAAGTAGGTTCAACAACCAAGCAACAGTTCCACCCTACTGCTTTGTATTCTGCTTCGAAATTGCCAAGAACACCCAAAATGCATCTCCACCAATTTCTCCGAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

303

Amino Acids

35.39

Weight (kDa)

8.28

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 278 5.5e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 256, 318
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 1 cut(s) 502
AclWI GGATC 1 cut(s) 794
AcsI RAATTY 2 cut(s) 188, 584
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 5 cut(s) 13, 167, 206, 293, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 813, 845
AluBI AGCT 4 cut(s) 512, 563, 675, 686
AluI AGCT 4 cut(s) 512, 563, 675, 686
Alw21I GWGCWC 1 cut(s) 438
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 1 cut(s) 794
Aor13HI TCCGGA 1 cut(s) 390
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 267, 533
ApoI RAATTY 2 cut(s) 188, 584
AsuII TTCGAA 1 cut(s) 858
BaeGI GKGCMC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 279, 520
BccI CCATC 2 cut(s) 424, 796
BclI TGATCA 1 cut(s) 337
BfaI CTAG 2 cut(s) 509, 564
BglII AGATCT 1 cut(s) 601
BisI GCNGC 2 cut(s) 268, 534
BlsI GCNGC 2 cut(s) 269, 535
BmsI GCATC 4 cut(s) 66, 204, 396, 893
BoxI GACNNNNGTC 1 cut(s) 686
Bpu10I CCTNAGC 1 cut(s) 383
Bpu14I TTCGAA 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 92, 257
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 86, 642
BseAI TCCGGA 1 cut(s) 390
BseGI GGATG 3 cut(s) 55, 387, 772
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 9, 638
BseNI ACTGG 2 cut(s) 86, 642
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 2 cut(s) 279, 520
Bsh1236I CGCG 2 cut(s) 256, 318
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 236, 391
BslI CCNNNNNNNGG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 1 cut(s) 438
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 3 cut(s) 337, 601, 799
BspACI CCGC 1 cut(s) 502
BspCNI CTCAG 2 cut(s) 10, 639
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 2 cut(s) 256, 318
BspHI TCATGA 1 cut(s) 397
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 86, 642
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 3 cut(s) 337, 601, 799
Bst4CI ACNGT 2 cut(s) 106, 829
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 18, 383, 647
BstF5I GGATG 3 cut(s) 55, 387, 772
BstFNI CGCG 2 cut(s) 256, 318
BstKTI GATC 3 cut(s) 340, 604, 802
BstMBI GATC 3 cut(s) 337, 601, 799
BstMWI GCNNNNNNNGC 3 cut(s) 253, 384, 530
BstPAI GACNNNNGTC 1 cut(s) 686
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 2 cut(s) 256, 318
BstV1I GCAGC 2 cut(s) 279, 520
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BtsCI GGATG 3 cut(s) 55, 387, 772
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 5 cut(s) 23, 79, 237, 531, 635
Cac8I GCNNGC 1 cut(s) 280
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 235
Csp6I GTAC 1 cut(s) 329
CspCI CAANNNNNGTGG 4 cut(s) 20, 55, 206, 241
CviAII CATG 8 cut(s) 86, 398, 445, 454, 467, 594, 624, 763
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 3 cut(s) 18, 383, 647
DpnI GATC 3 cut(s) 339, 603, 801
DpnII GATC 3 cut(s) 337, 601, 799
Eco57I CTGAAG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 886
FaeI CATG 8 cut(s) 89, 401, 448, 457, 470, 597, 627, 766
FatI CATG 8 cut(s) 85, 397, 444, 453, 466, 593, 623, 762
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 268, 534
FokI GGATG 3 cut(s) 62, 374, 779
Fsp4HI GCNGC 2 cut(s) 268, 534
FspBI CTAG 2 cut(s) 509, 564
GluI GCNGC 2 cut(s) 268, 534
HapII CCGG 2 cut(s) 236, 391
Hin1II CATG 8 cut(s) 89, 401, 448, 457, 470, 597, 627, 766
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 20, 394, 505, 655, 711
HpaII CCGG 2 cut(s) 236, 391
Hpy166II GTNNAC 2 cut(s) 241, 436
Hpy188I TCNGA 4 cut(s) 117, 180, 648, 903
Hpy188III TCNNGA 6 cut(s) 10, 61, 391, 398, 545, 782
Hpy8I GTNNAC 2 cut(s) 241, 436
HpyAV CCTTC 4 cut(s) 259, 395, 548, 672
HpyCH4III ACNGT 2 cut(s) 106, 829
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 79, 217, 436, 461, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 384, 530
HpyF3I CTNAG 3 cut(s) 18, 383, 647
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 8 cut(s) 89, 401, 448, 457, 470, 597, 627, 766
Kpn2I TCCGGA 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 337, 601, 799
Lsp1109I GCAGC 2 cut(s) 279, 520
LweI GCATC 4 cut(s) 66, 204, 396, 893
MaeI CTAG 2 cut(s) 509, 564
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 21, 100, 257
MalI GATC 3 cut(s) 339, 603, 801
MboI GATC 3 cut(s) 337, 601, 799
MboII GAAGA 5 cut(s) 65, 133, 422, 566, 611
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 6 cut(s) 188, 413, 572, 584, 861, 894
MluI ACGCGT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 9 cut(s) 123, 137, 157, 164, 279, 281, 318, 377, 669
Mph1103I ATGCAT 1 cut(s) 886
MroI TCCGGA 1 cut(s) 390
MseI TTAA 3 cut(s) 135, 416, 590
MslI CAYNNNNRTG 2 cut(s) 84, 765
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 2 cut(s) 236, 391
MvnI CGCG 2 cut(s) 256, 318
MwoI GCNNNNNNNGC 3 cut(s) 253, 384, 530
NdeII GATC 3 cut(s) 337, 601, 799
NlaIII CATG 8 cut(s) 89, 401, 448, 457, 470, 597, 627, 766
NmuCI GTSAC 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 886
NspV TTCGAA 1 cut(s) 858
PagI TCATGA 1 cut(s) 397
PfeI GAWTC 4 cut(s) 394, 505, 655, 711
PkrI GCNGC 2 cut(s) 269, 535
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 686
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 84, 765
SaqAI TTAA 3 cut(s) 135, 416, 590
SatI GCNGC 2 cut(s) 268, 534
Sau3AI GATC 3 cut(s) 337, 601, 799
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 4 cut(s) 66, 204, 396, 893
SfuI TTCGAA 1 cut(s) 858
SmiMI CAYNNNNRTG 2 cut(s) 84, 765
SmlI CTYRAG 2 cut(s) 71, 272
SmoI CTYRAG 2 cut(s) 71, 272
Sse9I AATT 6 cut(s) 188, 413, 572, 584, 861, 894
SsiI CCGC 1 cut(s) 502
SspI AATATT 1 cut(s) 777
SspMI CTAG 2 cut(s) 509, 564
TaaI ACNGT 2 cut(s) 106, 829
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 791, 858
TasI AATT 6 cut(s) 188, 413, 572, 584, 861, 894
TfiI GAWTC 4 cut(s) 394, 505, 655, 711
Tru1I TTAA 3 cut(s) 135, 416, 590
Tru9I TTAA 3 cut(s) 135, 416, 590
TscAI CASTG 5 cut(s) 30, 86, 237, 531, 642
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 2 cut(s) 267, 533
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 7 cut(s) 66, 134, 201, 414, 530, 531, 629
TspRI CASTG 5 cut(s) 30, 86, 237, 531, 642
VneI GTGCAC 1 cut(s) 434
XapI RAATTY 2 cut(s) 188, 584
XspI CTAG 2 cut(s) 509, 564
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.