Rh1BG342200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000704
Physical Location & Seq
Forward (+)
47565072 .. 47566322
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG342200.1

Sequence Viewer

Length: 951 bp
ATGGAAGATCTCTCGTTGATGATACTAGTTTTGACCCTCATATCACTTTTTTCTGGGTATTTTATCAAGTTTAAAACATCACTAGGGAAGAAACTTCCACCAGGGTCATTTGGTATTCCGTTAATTGGAGAGTCCATAAGCTTCATCCGAGCACAAAAACAGGACGGATCCGATGAGTGGATCCGGTCCCGTATCCGCAAGTATGGACCCGTCTTCAAGACCTCGCTCATGGGGTCTAAAACGGTGGTTATAACTGGCCAAGCTGGAAACCGGTTTGTGTTTGGTGGAGGTGACACTGGTATTGGAGGCAACCAAGTAGCAACTGTAGCCAGAATTCTCGGAAAGCACAGCATATTTGAGATTTCTGGGTTTAGGCACAAGCTTGTGAGGAGTGCCATAGCCAACTTCCTAAAGCCAGAAAACATTCAAAGAATTGTAGGCGAAATCGATTTGTTAGTCAAAGACCAAATTTTCAAGGAACTCGATGGCAAGGATGTAGTACAATTAGTGCCTTTGGTGAAGAGACTAACATTCAAGGTTACTTGCAGTTTGTTTTTTGGACTACCAGAAGGCAAAGACAAAGATACATTGTTTGAAGATTTTACTATTGCCATCAAGGGTCTGTGGGCAATTCCATTAAACCTTCTAGGCACTCAATTTTACAAAGCAGTGCAAGCACGTGGCAGGATAGCCAAGCTCCTCACCAAGCTCATGAAGGAAAAGAAGAATAAGGAAGCAAAAATGACCCCCCAGAACAATGACATCATCTCAGCCCTGCTTCTTCTGAGAGATGAAGTTGGTAAGCCTCTGCAAGAGCAAGAGATTGTTGATAATCTGATCACTGTGATAGTTGCTAGCCATGACACCACCTCAATTCTCCTGAGCCTCCTTTTAAGGCATCTTTCTACAGATTCCAAGATTTTCAGTGAGGTCCTTCAAGGTAACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

316

Amino Acids

35.07

Weight (kDa)

9.66

Isoelectric Point (pI)

23.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 311 3.8e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AciI CCGC 1 cut(s) 196
AclWI GGATC 4 cut(s) 162, 175, 175, 188
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 2 cut(s) 333, 468
AcvI CACGTG 1 cut(s) 680
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 125, 177
AgeI ACCGGT 1 cut(s) 270
AgsI TTSAA 6 cut(s) 217, 428, 475, 535, 596, 938
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 5 cut(s) 141, 263, 382, 697, 709
AluI AGCT 5 cut(s) 141, 263, 382, 697, 709
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 4 cut(s) 162, 175, 175, 188
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 333, 468
AsiGI ACCGGT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 3 cut(s) 186, 206, 931
AsuHPI GGTGA 3 cut(s) 302, 529, 694
AsuNHI GCTAGC 1 cut(s) 854
AvaII GGWCC 3 cut(s) 186, 206, 931
BalI TGGCCA 1 cut(s) 258
BamHI GGATCC 2 cut(s) 167, 180
BbrPI CACGTG 1 cut(s) 680
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 2 cut(s) 479, 620
BciT130I CCWGG 1 cut(s) 102
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 517
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 83, 647, 855
BfmI CTRYAG 2 cut(s) 324, 906
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 3 cut(s) 186, 206, 931
BmgT120I GGNCC 3 cut(s) 186, 206, 931
BmiI GGNNCC 4 cut(s) 169, 182, 188, 208
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 907
BmtI GCTAGC 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 881
Bsa29I ATCGAT 1 cut(s) 447
BsaAI YACGTR 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 183, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 177
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 2 cut(s) 259, 301
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 144, 499
BseLI CCNNNNNNNGG 2 cut(s) 125, 177
BseMII CTCAG 3 cut(s) 776, 783, 872
BseNI ACTGG 2 cut(s) 259, 301
BseRI GAGGAG 2 cut(s) 403, 689
BshFI GGCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 184, 271
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 125, 177
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 7, 167, 180, 837
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 3 cut(s) 777, 782, 873
BspDI ATCGAT 1 cut(s) 447
BspHI TCATGA 1 cut(s) 711
BspLI GGNNCC 4 cut(s) 169, 182, 188, 208
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 4 cut(s) 162, 175, 175, 188
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 2 cut(s) 259, 301
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 4 cut(s) 7, 167, 180, 837
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 244, 325, 844
Bst6I CTCTTC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 675, 856
BstDEI CTNAG 3 cut(s) 769, 785, 881
BstEII GGTNACC 1 cut(s) 941
BstF5I GGATG 2 cut(s) 144, 499
BstKTI GATC 4 cut(s) 10, 170, 183, 840
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 4 cut(s) 7, 167, 180, 837
BstMWI GCNNNNNNNGC 2 cut(s) 326, 674
BstNI CCWGG 1 cut(s) 102
BstPI GGTNACC 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 324, 906
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 3 cut(s) 7, 167, 180
BstYI RGATCY 3 cut(s) 7, 167, 180
Bsu15I ATCGAT 1 cut(s) 447
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 447
BtsCI GGATG 2 cut(s) 144, 499
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 4 cut(s) 294, 675, 840, 931
Cac8I GCNNGC 2 cut(s) 675, 856
CciI TCATGA 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 186, 206, 931
ClaI ATCGAT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 500
CspAI ACCGGT 1 cut(s) 270
CviAII CATG 3 cut(s) 229, 712, 860
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 769, 785, 881
DpnI GATC 4 cut(s) 9, 169, 182, 839
DpnII GATC 4 cut(s) 7, 167, 180, 837
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco47I GGWCC 3 cut(s) 186, 206, 931
Eco72I CACGTG 1 cut(s) 680
Eco91I GGTNACC 1 cut(s) 941
EcoO109I RGGNCCY 1 cut(s) 931
EcoO65I GGTNACC 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 232, 715, 863
FaiI YATR 9 cut(s) 41, 137, 204, 230, 251, 353, 398, 713, 861
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 228, 711, 859
FbaI TGATCA 1 cut(s) 837
FokI GGATG 2 cut(s) 131, 506
FspBI CTAG 4 cut(s) 26, 83, 647, 855
HaeIII GGCC 1 cut(s) 258
HapII CCGG 2 cut(s) 184, 271
Hin1II CATG 3 cut(s) 232, 715, 863
HindIII AAGCTT 2 cut(s) 139, 380
HinfI GANTC 2 cut(s) 131, 911
HpaII CCGG 2 cut(s) 184, 271
HphI GGTGA 3 cut(s) 302, 529, 694
Hpy188I TCNGA 5 cut(s) 149, 172, 341, 786, 837
Hpy188III TCNNGA 3 cut(s) 217, 712, 880
HpyAV CCTTC 4 cut(s) 563, 653, 709, 944
HpyCH4III ACNGT 3 cut(s) 244, 325, 844
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 3 cut(s) 546, 673, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 674
HpyF3I CTNAG 3 cut(s) 769, 785, 881
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 3 cut(s) 232, 715, 863
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 4 cut(s) 7, 167, 180, 837
LmnI GCTCC 1 cut(s) 702
LweI GCATC 1 cut(s) 907
MaeI CTAG 4 cut(s) 26, 83, 647, 855
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 3 cut(s) 290, 538, 941
MalI GATC 4 cut(s) 9, 169, 182, 839
MboI GATC 4 cut(s) 7, 167, 180, 837
MboII GAAGA 7 cut(s) 17, 100, 205, 532, 608, 736, 773
MflI RGATCY 3 cut(s) 7, 167, 180
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 8 cut(s) 123, 333, 432, 468, 503, 630, 656, 873
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 140
Mox20I TGGCCA 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 423
MscI TGGCCA 1 cut(s) 258
MseI TTAA 4 cut(s) 72, 122, 638, 893
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 2 cut(s) 184, 271
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 326, 674
NdeII GATC 4 cut(s) 7, 167, 180, 837
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 3 cut(s) 232, 715, 863
NlaIV GGNNCC 4 cut(s) 169, 182, 188, 208
NmuCI GTSAC 1 cut(s) 290
PagI TCATGA 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 911
PinAI ACCGGT 1 cut(s) 270
PleI GAGTC 1 cut(s) 139
PmaCI CACGTG 1 cut(s) 680
PmlI CACGTG 1 cut(s) 680
PpsI GAGTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 680
PpuMI RGGWCCY 1 cut(s) 931
PsiI TTATAA 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 1 cut(s) 100
PspCI CACGTG 1 cut(s) 680
PspEI GGTNACC 1 cut(s) 941
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 169, 182, 188, 208
PspPI GGNCC 3 cut(s) 186, 206, 931
PspPPI RGGWCCY 1 cut(s) 931
PsuI RGATCY 3 cut(s) 7, 167, 180
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 4 cut(s) 72, 122, 638, 893
Sau3AI GATC 4 cut(s) 7, 167, 180, 837
Sau96I GGNCC 3 cut(s) 186, 206, 931
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 2 cut(s) 324, 906
SinI GGWCC 3 cut(s) 186, 206, 931
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 8 cut(s) 123, 333, 432, 468, 503, 630, 656, 873
SsiI CCGC 1 cut(s) 196
SspMI CTAG 4 cut(s) 26, 83, 647, 855
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 244, 325, 844
TaiI ACGT 1 cut(s) 682
TaqI TCGA 2 cut(s) 447, 483
TasI AATT 8 cut(s) 123, 333, 432, 468, 503, 630, 656, 873
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 4 cut(s) 72, 122, 638, 893
Tru9I TTAA 4 cut(s) 72, 122, 638, 893
TscAI CASTG 4 cut(s) 301, 675, 847, 931
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 133, 728, 807
TspGWI ACGGA 2 cut(s) 108, 180
TspRI CASTG 4 cut(s) 301, 675, 847, 931
VpaK11BI GGWCC 3 cut(s) 186, 206, 931
XapI RAATTY 2 cut(s) 333, 468
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 4 cut(s) 26, 83, 647, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.