Rroxscaffold_1G00041980

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000704
Physical Location & Seq
Forward (+)
59970204 .. 59979552
9349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041980.1

Sequence Viewer

Length: 1023 bp
ATGGATGAAGAAATCAGGAAGCACCTTGAGATGCACTGGCATGGCAAACAACAAGTAACAGTTATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTACTTTTTGGGCTTGAACGAGGAACTCGGAGAGATGAATTTTTGGAGTGTTTTGAAAAGATGATGCAAGGATTGTGGTCAGTGCCGGTCAACTTGCCCTTCATGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAAAATGCTCAAAGAACTTATACGCGAAAGGAGGGTACAACTTGATCAAAAAGGGGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCCGGAATGATGAAGGTAAAGAAGAATTAACAGAGTTGGAGATGGTGCACAATGTCATGCTAGTCATGGTTGCAGGGCATGATACTTCGGCTATTCTCATTACGTTCCTTTTGCGGATTCTAGCTAATGAACCAGCAGTGTATGCTGCCCTTCGTCAAGAGCAGGAAGAAATAGCTAGAAGCAAATTGGCAGGAAAATTTTTAACATGGGAAGATCTTGCCAAAATGAAATACACTTGGAGTGTAGCACTTGAAACTCTCAGAATGATTCCTCCTTCCTTTGGTAGCTTTAAGACAGCTGTCAAAGATATTGAGTTCGGTGGATTCCACATTCCAAAAGGGTGGCAGATATTCTGGGCTACTCCAATGACCCACATGGATGATAGAATATTTCCAGAGCCATCGAAGTTTGATCCAAGTAGGTTCAACAACCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGTTTGCCAGGATCGAAACCCTAATTGCAATGCACCATATGGTAACTCAATTCACCTGGAAGCTACGTGCAGACAATCACTTCAGCAGGGATTTATTGCCTGTACCTACTCAAGGACTGCCCATTGAAATCATGCCGAGAATACTACTACAAATGCAAACAGATGAGAACACCGGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

340

Amino Acids

39.4

Weight (kDa)

7.74

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 14 - 304 9e-64 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 1 cut(s) 457
AclWI GGATC 2 cut(s) 749, 860
AcsI RAATTY 2 cut(s) 143, 539
AcuI CTGAAG 1 cut(s) 907
AfaI GTAC 3 cut(s) 285, 804, 945
AfiI CCNNNNNNNGG 3 cut(s) 623, 812, 953
AgsI TTSAA 6 cut(s) 122, 161, 248, 596, 769, 968
AjnI CCWGG 3 cut(s) 832, 848, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 5 cut(s) 467, 518, 630, 641, 904
AluI AGCT 5 cut(s) 467, 518, 630, 641, 904
Alw21I GWGCWC 1 cut(s) 393
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 2 cut(s) 749, 860
Aor13HI TCCGGA 1 cut(s) 345
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 222, 488
ApoI RAATTY 2 cut(s) 143, 539
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 886
AvaII GGWCC 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 234, 475
BccI CCATC 2 cut(s) 379, 751
BciT130I CCWGG 3 cut(s) 834, 850, 898
BclI TGATCA 1 cut(s) 292
BfaI CTAG 4 cut(s) 404, 464, 519, 822
BglII AGATCT 1 cut(s) 556
BisI GCNGC 2 cut(s) 223, 489
BlsI GCNGC 2 cut(s) 224, 490
Bme1390I CCNGG 3 cut(s) 834, 850, 898
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 818
BmiI GGNNCC 1 cut(s) 819
BmrFI CCNGG 3 cut(s) 834, 850, 898
BmsI GCATC 3 cut(s) 21, 159, 351
BoxI GACNNNNGTC 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 338
BpuEI CTTGAG 3 cut(s) 47, 212, 936
BsaAI YACGTR 1 cut(s) 908
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 812, 953
Bse118I RCCGGY 2 cut(s) 190, 1013
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 876
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 3 cut(s) 834, 850, 898
BseGI GGATG 3 cut(s) 10, 342, 727
BseLI CCNNNNNNNGG 3 cut(s) 623, 812, 953
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 1 cut(s) 616
BseNI ACTGG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 2 cut(s) 234, 475
BsgI GTGCAG 1 cut(s) 930
Bsh1236I CGCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 3 cut(s) 191, 346, 1014
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 3 cut(s) 623, 812, 953
BsmFI GGGAC 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 393
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 4 cut(s) 292, 556, 754, 852
BspACI CCGC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 615
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 819
BspPI GGATC 2 cut(s) 749, 860
BsrDI GCAATG 1 cut(s) 876
BsrFI RCCGGY 2 cut(s) 190, 1013
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 2 cut(s) 190, 1013
BssMI GATC 4 cut(s) 292, 556, 754, 852
Bst2UI CCWGG 3 cut(s) 834, 850, 898
Bst4CI ACNGT 2 cut(s) 61, 784
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 338, 602
BstENI CCTNNNNNAGG 1 cut(s) 951
BstF5I GGATG 3 cut(s) 10, 342, 727
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 4 cut(s) 295, 559, 757, 855
BstMBI GATC 4 cut(s) 292, 556, 754, 852
BstMWI GCNNNNNNNGC 3 cut(s) 208, 339, 485
BstNI CCWGG 3 cut(s) 834, 850, 898
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 832, 848, 896
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 234, 475
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 1 cut(s) 684
BstYI RGATCY 1 cut(s) 556
BtsCI GGATG 3 cut(s) 10, 342, 727
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 3 cut(s) 34, 192, 486
Cac8I GCNNGC 1 cut(s) 235
Cfr10I RCCGGY 2 cut(s) 190, 1013
Cfr13I GGNCC 1 cut(s) 818
Csp6I GTAC 3 cut(s) 284, 803, 944
CspCI CAANNNNNGTGG 2 cut(s) 161, 196
CviAII CATG 8 cut(s) 41, 208, 400, 409, 422, 549, 718, 973
CviQI GTAC 3 cut(s) 284, 803, 944
DdeI CTNAG 2 cut(s) 338, 602
DpnI GATC 4 cut(s) 294, 558, 756, 854
DpnII GATC 4 cut(s) 292, 556, 754, 852
Eco47I GGWCC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 818
EcoRII CCWGG 3 cut(s) 832, 848, 896
FaeI CATG 8 cut(s) 44, 211, 403, 412, 425, 552, 721, 976
FaqI GGGAC 1 cut(s) 831
FatI CATG 8 cut(s) 40, 207, 399, 408, 421, 548, 717, 972
FauNDI CATATG 1 cut(s) 879
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 223, 489
FokI GGATG 3 cut(s) 17, 329, 734
Fsp4HI GCNGC 2 cut(s) 223, 489
FspBI CTAG 4 cut(s) 404, 464, 519, 822
GluI GCNGC 2 cut(s) 223, 489
HapII CCGG 3 cut(s) 191, 346, 1014
Hin1II CATG 8 cut(s) 44, 211, 403, 412, 425, 552, 721, 976
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 460, 610, 666
HpaII CCGG 3 cut(s) 191, 346, 1014
HphI GGTGA 1 cut(s) 886
Hpy166II GTNNAC 2 cut(s) 196, 391
Hpy188I TCNGA 2 cut(s) 135, 605
Hpy188III TCNNGA 4 cut(s) 16, 346, 500, 737
Hpy8I GTNNAC 2 cut(s) 196, 391
HpyAV CCTTC 4 cut(s) 214, 350, 503, 627
HpyCH4III ACNGT 2 cut(s) 61, 784
HpyCH4IV ACGT 2 cut(s) 446, 907
HpyCH4V TGCA 8 cut(s) 34, 172, 391, 416, 869, 874, 911, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 339, 485
HpyF3I CTNAG 2 cut(s) 338, 602
HpySE526I ACGT 2 cut(s) 446, 907
Hsp92II CATG 8 cut(s) 44, 211, 403, 412, 425, 552, 721, 976
Kpn2I TCCGGA 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 292, 556, 754, 852
Lsp1109I GCAGC 2 cut(s) 234, 475
LweI GCATC 3 cut(s) 21, 159, 351
MaeI CTAG 4 cut(s) 404, 464, 519, 822
MaeII ACGT 2 cut(s) 446, 907
MaeIII GTNAC 3 cut(s) 55, 212, 883
MalI GATC 4 cut(s) 294, 558, 756, 854
MboI GATC 4 cut(s) 292, 556, 754, 852
MboII GAAGA 5 cut(s) 20, 88, 377, 521, 566
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 6 cut(s) 143, 368, 527, 539, 864, 890
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 9 cut(s) 92, 112, 119, 234, 236, 273, 332, 624, 806
MroI TCCGGA 1 cut(s) 345
MseI TTAA 4 cut(s) 90, 371, 545, 633
MslI CAYNNNNRTG 2 cut(s) 39, 720
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 191, 346, 1014
MspR9I CCNGG 3 cut(s) 834, 850, 898
MvaI CCWGG 3 cut(s) 834, 850, 898
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 208, 339, 485
NdeI CATATG 1 cut(s) 879
NdeII GATC 4 cut(s) 292, 556, 754, 852
NlaIII CATG 8 cut(s) 44, 211, 403, 412, 425, 552, 721, 976
NlaIV GGNNCC 1 cut(s) 819
NmeAIII GCCGAG 1 cut(s) 1002
PfeI GAWTC 3 cut(s) 460, 610, 666
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 2 cut(s) 224, 490
Ppu21I YACGTR 1 cut(s) 908
PpuMI RGGWCCY 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 3 cut(s) 832, 848, 896
PspGI CCWGG 3 cut(s) 832, 848, 896
PspN4I GGNNCC 1 cut(s) 819
PspPI GGNCC 1 cut(s) 818
PspPPI RGGWCCY 1 cut(s) 818
PsuI RGATCY 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 285, 804, 945
RsaNI GTAC 3 cut(s) 284, 803, 944
RseI CAYNNNNRTG 2 cut(s) 39, 720
SaqAI TTAA 4 cut(s) 90, 371, 545, 633
SatI GCNGC 2 cut(s) 223, 489
Sau3AI GATC 4 cut(s) 292, 556, 754, 852
Sau96I GGNCC 1 cut(s) 818
ScrFI CCNGG 3 cut(s) 834, 850, 898
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 3 cut(s) 21, 159, 351
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 2 cut(s) 39, 720
SmlI CTYRAG 3 cut(s) 26, 227, 951
SmoI CTYRAG 3 cut(s) 26, 227, 951
Sse9I AATT 6 cut(s) 143, 368, 527, 539, 864, 890
SsiI CCGC 1 cut(s) 457
SspI AATATT 1 cut(s) 732
SspMI CTAG 4 cut(s) 404, 464, 519, 822
StyD4I CCNGG 3 cut(s) 832, 848, 896
TaaI ACNGT 2 cut(s) 61, 784
TaiI ACGT 2 cut(s) 449, 910
TaqI TCGA 2 cut(s) 746, 855
TasI AATT 6 cut(s) 143, 368, 527, 539, 864, 890
TfiI GAWTC 3 cut(s) 460, 610, 666
Tru1I TTAA 4 cut(s) 90, 371, 545, 633
Tru9I TTAA 4 cut(s) 90, 371, 545, 633
TscAI CASTG 3 cut(s) 41, 192, 486
TseI GCWGC 2 cut(s) 222, 488
TspDTI ATGAA 7 cut(s) 21, 89, 156, 196, 369, 486, 584
TspRI CASTG 3 cut(s) 41, 192, 486
VneI GTGCAC 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 818
XagI CCTNNNNNAGG 1 cut(s) 951
XapI RAATTY 2 cut(s) 143, 539
XspI CTAG 4 cut(s) 404, 464, 519, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.