Rorug05G0176800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000704
Physical Location & Seq
Forward (+)
16545671 .. 16547153
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0176800.1

Sequence Viewer

Length: 813 bp
ATGACGACTAAGAAGAACAAGAAATCTCAAGCTAAAAAGATCGATCAAGAGCAATTGCATGGCTTTGAGAAATGGATTAAGCACTACAGCAGCAACCAAACCATAGTGCTAGTCGGAGAAGGAGACTTCTCGTTTGCTCTTTGCTTAGCTAGACAATTTGGCTCTGGTAGGAACATGATTGCAACTTCTCTCGACTCCAAAGGGGAGTTGATCAAATATTCAAAAGCTATGAGCAATTTGAGGGAGTTAGAGAGCAGAGGATGCCAAATTTTGCACGGGGTAGATGTCAACACCATGCTCCATCACCCTGAACTTATTAATAAACAGTTTGATCGAATAATTTATAACTTTCCTCATGCTGGTTACTTGAAAGGCCGCCGTCGTTCATCAGAAAAGAATAAGTCCCAAATTTTGTTGCATCAGAGTTTGGTGAGGGGATACTTCATGAACTCACGGGAGATGCTGACTAAAAATGGAGAAATTCATGTCACACACAAGACATCATATCCTTTTAGTGAGTGGGAAATAATGGAGTTAGCAGAGGAGGCTGAGTTATTCTTGGTTAAAGAAGAAGAGTTTTACAAACTGGATTATCCGGGATATGAAAACAAGAGAGGAGATGGGATTTGCGACGAGTCATTCCCTGTTGGGAAGTCTAGCACCTTCATCTTCGCCAAGCGGTTGTACCCTAATACGAGGTTCCACCCAGGTACTTTGAGTATCAGTACATGGCCTGCTGATATAATAGATATGGCTTGCACCTATTTAGATAGCTTGGAGATGAAGAAATCCAACCGCGGCCATAAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

270

Amino Acids

31.16

Weight (kDa)

8.97

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 37 - 205 2.3e-50 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 798
AciI CCGC 4 cut(s) 376, 679, 796, 798
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 3 cut(s) 267, 408, 480
AfaI GTAC 3 cut(s) 686, 712, 727
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 222, 370
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 4 cut(s) 32, 149, 227, 774
AluI AGCT 4 cut(s) 32, 149, 227, 774
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 3 cut(s) 373, 731, 799
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 3 cut(s) 267, 408, 480
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AseI ATTAAT 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 2 cut(s) 296, 442
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 309, 614
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 1 cut(s) 431
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 4 cut(s) 110, 150, 657, 811
BfmI CTRYAG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 3 cut(s) 91, 376, 799
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 3 cut(s) 92, 377, 800
Bme1390I CCNGG 2 cut(s) 597, 708
BmiI GGNNCC 1 cut(s) 701
BmrFI CCNGG 2 cut(s) 597, 708
BmsI GCATC 3 cut(s) 251, 427, 450
Bpu1102I GCTNAGC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 597
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 706, 796
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 706, 796
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 557, 630
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 375, 733, 801
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 3 cut(s) 375, 733, 801
Bsp143I GATC 4 cut(s) 39, 43, 210, 331
Bsp1720I GCTNAGC 1 cut(s) 145
BspACI CCGC 4 cut(s) 376, 679, 796, 798
BspANI GGCC 3 cut(s) 375, 733, 801
BspCNI CTCAG 1 cut(s) 541
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 701
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 706, 796
BssMI GATC 4 cut(s) 39, 43, 210, 331
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 735, 757
BstDEI CTNAG 3 cut(s) 9, 145, 549
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 798
BstKTI GATC 4 cut(s) 42, 46, 213, 334
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 4 cut(s) 39, 43, 210, 331
BstMWI GCNNNNNNNGC 2 cut(s) 261, 545
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 2 cut(s) 595, 706
BstSFI CTRYAG 1 cut(s) 85
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 42
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 3 cut(s) 375, 733, 801
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 735, 757
CciI TCATGA 1 cut(s) 444
Cfr42I CCGCGG 1 cut(s) 799
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 3 cut(s) 685, 711, 726
CviAII CATG 7 cut(s) 59, 175, 295, 356, 445, 485, 729
CviQI GTAC 3 cut(s) 685, 711, 726
DdeI CTNAG 3 cut(s) 9, 145, 549
DpnI GATC 4 cut(s) 41, 45, 212, 333
DpnII GATC 4 cut(s) 39, 43, 210, 331
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 706
FaeI CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
FaqI GGGAC 1 cut(s) 388
FatI CATG 7 cut(s) 58, 174, 294, 355, 444, 484, 728
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 91, 376, 799
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 91, 376, 799
FspBI CTAG 4 cut(s) 110, 150, 657, 811
GluI GCNGC 3 cut(s) 91, 376, 799
HaeIII GGCC 3 cut(s) 375, 733, 801
HapII CCGG 1 cut(s) 596
Hin1II CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 194, 635
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 296, 442
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 116, 391, 423
Hpy188III TCNNGA 3 cut(s) 47, 191, 445
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 2 cut(s) 384, 635
HpyAV CCTTC 2 cut(s) 113, 673
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 58, 182, 274, 418, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 545
HpyF3I CTNAG 3 cut(s) 9, 145, 549
Hsp92II CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
Ksp22I TGATCA 1 cut(s) 210
KspI CCGCGG 1 cut(s) 799
Kzo9I GATC 4 cut(s) 39, 43, 210, 331
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 9 cut(s) 150, 321, 345, 572, 609, 657, 693, 720, 747
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 3 cut(s) 251, 427, 450
MaeI CTAG 4 cut(s) 110, 150, 657, 811
MaeIII GTNAC 2 cut(s) 362, 487
MalI GATC 4 cut(s) 41, 45, 212, 333
MboI GATC 4 cut(s) 39, 43, 210, 331
MboII GAAGA 5 cut(s) 25, 581, 584, 661, 796
MfeI CAATTG 1 cut(s) 53
MluCI AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
MlyI GAGTC 2 cut(s) 188, 644
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 8 cut(s) 234, 251, 363, 426, 535, 538, 608, 690
MseI TTAA 3 cut(s) 78, 318, 564
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 2 cut(s) 597, 708
MunI CAATTG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 708
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 261, 545
NciI CCSGG 1 cut(s) 597
NdeII GATC 4 cut(s) 39, 43, 210, 331
NlaIII CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
NlaIV GGNNCC 1 cut(s) 701
NmuCI GTSAC 1 cut(s) 487
PagI TCATGA 1 cut(s) 444
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 3 cut(s) 92, 377, 800
PleI GAGTC 2 cut(s) 188, 643
PpsI GAGTC 2 cut(s) 188, 643
PshBI ATTAAT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 1 cut(s) 701
RsaI GTAC 3 cut(s) 686, 712, 727
RsaNI GTAC 3 cut(s) 685, 711, 726
SacII CCGCGG 1 cut(s) 799
SaqAI TTAA 3 cut(s) 78, 318, 564
SatI GCNGC 3 cut(s) 91, 376, 799
Sau3AI GATC 4 cut(s) 39, 43, 210, 331
SchI GAGTC 2 cut(s) 188, 644
ScrFI CCNGG 2 cut(s) 597, 708
SetI ASST 8 cut(s) 34, 151, 229, 665, 701, 712, 764, 776
SfaNI GCATC 3 cut(s) 251, 427, 450
SfcI CTRYAG 1 cut(s) 85
Sfr303I CCGCGG 1 cut(s) 799
SgrBI CCGCGG 1 cut(s) 799
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
SsiI CCGC 4 cut(s) 376, 679, 796, 798
SspI AATATT 1 cut(s) 218
SspMI CTAG 4 cut(s) 110, 150, 657, 811
StyD4I CCNGG 2 cut(s) 595, 706
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 42, 192, 334
TasI AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
TatI WGTACW 1 cut(s) 725
TauI GCSGC 2 cut(s) 378, 801
Tru1I TTAA 3 cut(s) 78, 318, 564
Tru9I TTAA 3 cut(s) 78, 318, 564
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 7 cut(s) 375, 433, 461, 473, 618, 655, 797
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 3 cut(s) 267, 408, 480
XspI CTAG 4 cut(s) 110, 150, 657, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.