Rh5AG263100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000704
Physical Location & Seq
Reverse (-)
34588783 .. 34590828
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG263100.1

Sequence Viewer

Length: 1344 bp
ATGATGACTACTCTTTTCACAATTTTCCTCTTCCTCATTCCCATATACCTTCTCCTAAAGAGCAGAAGAAAATCATCAGGAAGGCTTCCTCCAGGCTCATTAGGACTGCCCCTAATAGGCCAGAGCCTTGATTTTCTCCGAGCGATGCGTGCCAACACTGCAGAGGATTGGCTTGAACAAAGGATCAGAAAGTATGGTCCAGTTTCAAAGCTAAGTCTCTTTGGCAAGCCAACAGTCTTCATCCATGGACAAGCTGCAAACAAGTTTATATTCACCAGTGATGGGAGCACCATTTCAGCGCAACAAACCGAGTCTATTCGTAGGATTTTGGGGGAACGGAGTATATCCGAGTTAAGTGCTGAGGATCACAAACGTGTCAGAAGTGCACTTATGCTATTCTTGAAGCCTGAGTCACTGAAGCAATATGTGTGGAAAATGGATGAAGAAATCAGGAAGCACCTTGAGATGCACTGGCATGGCAAACAACAAGTAACAGTTATGCCCCTGATGAAGAACCTCACATTTAACATAATATCCTCTCTAATTTTTGGGCTTGAAAGAGGAACTCGGAGAGATGAATTTTTGGAGTGTTTTGAAAAGATGATGCAAGGATTGTGGTCAGTGCCGGTCAACTTGCCCTTCACGCGTTACAACAGCAGCCTCAAGGCAAGCAAGAGGGTTCAAAAAATGCTCAAAGAACTTATACGCGAAAGGAGGGTACAACTTGATCAAAAAAGGGCTTCTCCACAACAAGACCTCTTCACTTGCTTCCTTAGCATCCGGAATCATGAAGGTAAAGAAGAATTAACAGAGTTGGAGATGGTGCACAATGTCATGGTAGTCATGGTTGCAGGGCATGATACTTCGGCTATTCTTATTACGTTCCTTTTGCGGATTCTAGCTAATGAACCAGCAGTGTATGCTGCCCTTCATCAAGAGCAGGAAGAAATAGCTAGAACCAAATTGGCAGGAGAATTTTTAACATGGGAAGATCTTGCCAAAATGAAATACACATGGAGTGTAGCACTGGAAACTCTGAGAATGATTCCTCCTTCCTTTGGTAGCTTTAGGACAGCTGTCAAAGATATTGAGTTCGGTGGATTCCACATTCCTCAAGGGTGGCAGATATTCTGGGCTACTCCTATGACCCACATGGATGACAGAATATTTCCAGAGCCATCGAAGTTTGATCCAAGTAGGTTCAACAACCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGTTTGCCAGGATCGAAACCCTAATTGCAATGCACCATATGGTAACTCAATTCACCTGGAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

447

Amino Acids

51.7

Weight (kDa)

9.42

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 446 1.3e-71 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 646, 708
AccIII TCCGGA 1 cut(s) 780
AciI CCGC 1 cut(s) 892
AclWI GGATC 4 cut(s) 191, 372, 1184, 1295
AcsI RAATTY 2 cut(s) 578, 974
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 2 cut(s) 720, 1239
AfiI CCNNNNNNNGG 4 cut(s) 116, 282, 1058, 1247
AflIII ACRYGT 2 cut(s) 373, 644
AgsI TTSAA 7 cut(s) 176, 207, 403, 557, 596, 683, 1204
AjnI CCWGG 4 cut(s) 91, 1267, 1283, 1331
AjuI GAANNNNNNNTTGG 2 cut(s) 1203, 1235
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 7 cut(s) 211, 254, 902, 953, 1065, 1076, 1339
AluI AGCT 7 cut(s) 211, 254, 902, 953, 1065, 1076, 1339
Alw21I GWGCWC 3 cut(s) 290, 388, 828
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 2 cut(s) 384, 824
AlwI GGATC 4 cut(s) 191, 372, 1184, 1295
Aor13HI TCCGGA 1 cut(s) 780
AoxI GGCC 1 cut(s) 118
ApaLI GTGCAC 2 cut(s) 384, 824
ApeKI GCWGC 3 cut(s) 254, 657, 923
ApoI RAATTY 2 cut(s) 578, 974
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 197, 1253
AsuHPI GGTGA 2 cut(s) 265, 1321
AvaII GGWCC 2 cut(s) 197, 1253
BaeGI GKGCMC 2 cut(s) 388, 828
BbsI GAAGAC 1 cut(s) 229
Bbv12I GWGCWC 3 cut(s) 290, 388, 828
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 241, 669, 910
BccI CCATC 3 cut(s) 275, 814, 1186
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 4 cut(s) 93, 1269, 1285, 1333
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 899, 954, 1257
BfmI CTRYAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 991
BisI GCNGC 3 cut(s) 255, 658, 924
BlsI GCNGC 3 cut(s) 256, 659, 925
Bme1390I CCNGG 4 cut(s) 93, 1269, 1285, 1333
Bme18I GGWCC 2 cut(s) 197, 1253
BmgT120I GGNCC 2 cut(s) 197, 1253
BmiI GGNNCC 1 cut(s) 1254
BmrFI CCNGG 4 cut(s) 93, 1269, 1285, 1333
BmsI GCATC 4 cut(s) 135, 456, 594, 786
BoxI GACNNNNGTC 1 cut(s) 1076
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 2 cut(s) 360, 773
BpuEI CTTGAG 3 cut(s) 482, 647, 1098
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 780
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 282, 1058, 1247
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 4 cut(s) 200, 276, 476, 1032
Bse3DI GCAATG 1 cut(s) 1311
BseAI TCCGGA 1 cut(s) 780
BseBI CCWGG 4 cut(s) 93, 1269, 1285, 1333
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 4 cut(s) 240, 445, 777, 1162
BseLI CCNNNNNNNGG 4 cut(s) 116, 282, 1058, 1247
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 3 cut(s) 351, 399, 1028
BseNI ACTGG 4 cut(s) 200, 276, 476, 1032
BseSI GKGCMC 2 cut(s) 388, 828
BseXI GCAGC 3 cut(s) 241, 669, 910
Bsh1236I CGCG 2 cut(s) 646, 708
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 290, 388, 828
BsiSI CCGG 2 cut(s) 626, 781
BslFI GGGAC 1 cut(s) 1266
BslI CCNNNNNNNGG 4 cut(s) 116, 282, 1058, 1247
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 1266
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 290, 388, 828
Bsp13I TCCGGA 1 cut(s) 780
Bsp143I GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 892
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 352, 400, 1029
BspEI TCCGGA 1 cut(s) 780
BspFNI CGCG 2 cut(s) 646, 708
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 1 cut(s) 1254
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 4 cut(s) 191, 372, 1184, 1295
BsrDI GCAATG 1 cut(s) 1311
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 4 cut(s) 200, 276, 476, 1032
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 4 cut(s) 93, 1269, 1285, 1333
Bst4CI ACNGT 3 cut(s) 235, 496, 1219
Bst6I CTCTTC 2 cut(s) 35, 764
BstAPI GCANNNNNTGC 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 150, 227, 670
BstDEI CTNAG 5 cut(s) 212, 360, 408, 773, 1037
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 4 cut(s) 240, 445, 777, 1162
BstFNI CGCG 2 cut(s) 646, 708
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 6 cut(s) 186, 367, 730, 994, 1192, 1290
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
BstMWI GCNNNNNNNGC 5 cut(s) 149, 158, 643, 774, 920
BstNI CCWGG 4 cut(s) 93, 1269, 1285, 1333
BstPAI GACNNNNGTC 1 cut(s) 1076
BstSCI CCNGG 4 cut(s) 91, 1267, 1283, 1331
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 2 cut(s) 388, 828
BstUI CGCG 2 cut(s) 646, 708
BstV1I GCAGC 3 cut(s) 241, 669, 910
BstV2I GAAGAC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 4 cut(s) 240, 445, 777, 1162
BtsI GCAGTG 2 cut(s) 156, 921
BtsIMutI CAGTG 7 cut(s) 156, 283, 413, 469, 627, 921, 1025
Cac8I GCNNGC 3 cut(s) 150, 227, 670
CciI TCATGA 1 cut(s) 787
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 197, 1253
Csp6I GTAC 2 cut(s) 719, 1238
CspCI CAANNNNNGTGG 4 cut(s) 410, 445, 596, 631
CviAII CATG 9 cut(s) 245, 476, 788, 835, 844, 857, 984, 1014, 1153
CviQI GTAC 2 cut(s) 719, 1238
DdeI CTNAG 5 cut(s) 212, 360, 408, 773, 1037
DpnI GATC 6 cut(s) 185, 366, 729, 993, 1191, 1289
DpnII GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
Eam1104I CTCTTC 2 cut(s) 35, 764
EarI CTCTTC 2 cut(s) 35, 764
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 197, 1253
Eco57I CTGAAG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 1253
EcoRII CCWGG 4 cut(s) 91, 1267, 1283, 1331
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 9 cut(s) 248, 479, 791, 838, 847, 860, 987, 1017, 1156
FaqI GGGAC 1 cut(s) 1266
FatI CATG 9 cut(s) 244, 475, 787, 834, 843, 856, 983, 1013, 1152
FauNDI CATATG 1 cut(s) 1314
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 255, 658, 924
FokI GGATG 4 cut(s) 227, 452, 764, 1169
Fsp4HI GCNGC 3 cut(s) 255, 658, 924
FspBI CTAG 3 cut(s) 899, 954, 1257
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 255, 658, 924
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 626, 781
HhaI GCGC 1 cut(s) 301
Hin1II CATG 9 cut(s) 248, 479, 791, 838, 847, 860, 987, 1017, 1156
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 6 cut(s) 311, 410, 784, 895, 1045, 1101
HpaII CCGG 2 cut(s) 626, 781
HphI GGTGA 2 cut(s) 265, 1321
Hpy166II GTNNAC 3 cut(s) 386, 631, 826
Hpy188I TCNGA 6 cut(s) 140, 188, 349, 380, 570, 1038
Hpy188III TCNNGA 7 cut(s) 78, 400, 451, 781, 788, 935, 1172
Hpy8I GTNNAC 3 cut(s) 386, 631, 826
HpyAV CCTTC 6 cut(s) 59, 75, 649, 785, 938, 1062
HpyCH4III ACNGT 3 cut(s) 235, 496, 1219
HpyCH4IV ACGT 2 cut(s) 373, 881
HpyCH4V TGCA 9 cut(s) 161, 257, 386, 469, 607, 826, 851, 1304, 1309
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 158, 643, 774, 920
HpyF3I CTNAG 5 cut(s) 212, 360, 408, 773, 1037
HpySE526I ACGT 2 cut(s) 373, 881
Hsp92II CATG 9 cut(s) 248, 479, 791, 838, 847, 860, 987, 1017, 1156
HspAI GCGC 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 780
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
LmnI GCTCC 1 cut(s) 285
Lsp1109I GCAGC 3 cut(s) 241, 669, 910
LweI GCATC 4 cut(s) 135, 456, 594, 786
MaeI CTAG 3 cut(s) 899, 954, 1257
MaeII ACGT 2 cut(s) 373, 881
MaeIII GTNAC 4 cut(s) 411, 490, 647, 1318
MalI GATC 6 cut(s) 185, 366, 729, 993, 1191, 1289
MboI GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
MboII GAAGA 9 cut(s) 22, 78, 229, 455, 523, 751, 812, 956, 1001
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 3 cut(s) 290, 388, 828
MluCI AATT 8 cut(s) 21, 543, 578, 803, 962, 974, 1299, 1325
MluI ACGCGT 1 cut(s) 644
MlyI GAGTC 2 cut(s) 320, 419
MmeI TCCRAC 1 cut(s) 795
MroI TCCGGA 1 cut(s) 780
MseI TTAA 4 cut(s) 353, 525, 806, 980
MslI CAYNNNNRTG 3 cut(s) 372, 474, 1155
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 2 cut(s) 626, 781
MspR9I CCNGG 4 cut(s) 93, 1269, 1285, 1333
MvaI CCWGG 4 cut(s) 93, 1269, 1285, 1333
MvnI CGCG 2 cut(s) 646, 708
MwoI GCNNNNNNNGC 5 cut(s) 149, 158, 643, 774, 920
NcoI CCATGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 1314
NdeII GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
NlaIII CATG 9 cut(s) 248, 479, 791, 838, 847, 860, 987, 1017, 1156
NlaIV GGNNCC 1 cut(s) 1254
NmuCI GTSAC 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 372
PagI TCATGA 1 cut(s) 787
PfeI GAWTC 4 cut(s) 784, 895, 1045, 1101
PfoI TCCNGGA 1 cut(s) 1267
PkrI GCNGC 3 cut(s) 256, 659, 925
PleI GAGTC 2 cut(s) 319, 418
PpsI GAGTC 2 cut(s) 319, 418
PpuMI RGGWCCY 1 cut(s) 1253
PshAI GACNNNNGTC 1 cut(s) 1076
Psp5II RGGWCCY 1 cut(s) 1253
Psp6I CCWGG 4 cut(s) 91, 1267, 1283, 1331
PspGI CCWGG 4 cut(s) 91, 1267, 1283, 1331
PspN4I GGNNCC 1 cut(s) 1254
PspPI GGNCC 2 cut(s) 197, 1253
PspPPI RGGWCCY 1 cut(s) 1253
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 2 cut(s) 720, 1239
RsaNI GTAC 2 cut(s) 719, 1238
RseI CAYNNNNRTG 3 cut(s) 372, 474, 1155
SaqAI TTAA 4 cut(s) 353, 525, 806, 980
SatI GCNGC 3 cut(s) 255, 658, 924
Sau3AI GATC 6 cut(s) 183, 364, 727, 991, 1189, 1287
Sau96I GGNCC 2 cut(s) 197, 1253
SchI GAGTC 2 cut(s) 320, 419
ScrFI CCNGG 4 cut(s) 93, 1269, 1285, 1333
SduI GDGCHC 3 cut(s) 290, 388, 828
SfaNI GCATC 4 cut(s) 135, 456, 594, 786
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 197, 1253
SmiMI CAYNNNNRTG 3 cut(s) 372, 474, 1155
SmlI CTYRAG 3 cut(s) 461, 662, 1113
SmoI CTYRAG 3 cut(s) 461, 662, 1113
Sse9I AATT 8 cut(s) 21, 543, 578, 803, 962, 974, 1299, 1325
SsiI CCGC 1 cut(s) 892
SspI AATATT 1 cut(s) 1167
SspMI CTAG 3 cut(s) 899, 954, 1257
StyD4I CCNGG 4 cut(s) 91, 1267, 1283, 1331
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 235, 496, 1219
TaiI ACGT 2 cut(s) 376, 884
TaqI TCGA 2 cut(s) 1181, 1290
TasI AATT 8 cut(s) 21, 543, 578, 803, 962, 974, 1299, 1325
TfiI GAWTC 4 cut(s) 784, 895, 1045, 1101
Tru1I TTAA 4 cut(s) 353, 525, 806, 980
Tru9I TTAA 4 cut(s) 353, 525, 806, 980
TscAI CASTG 7 cut(s) 163, 283, 420, 476, 627, 921, 1032
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 3 cut(s) 254, 657, 923
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 8 cut(s) 229, 456, 524, 591, 804, 920, 921, 1019
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 7 cut(s) 163, 283, 420, 476, 627, 921, 1032
VneI GTGCAC 2 cut(s) 384, 824
VpaK11BI GGWCC 2 cut(s) 197, 1253
XapI RAATTY 2 cut(s) 578, 974
XspI CTAG 3 cut(s) 899, 954, 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.