Rh5AG478600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000704
Physical Location & Seq
Forward (+)
82270038 .. 82274183
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG478600.1

Sequence Viewer

Length: 1053 bp
ATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCAGGGGGGTCTTGTTTGAGGACTTTTCATTAGCCTTCAAAGCAACTTGGTCTCTTCCTATTAATTTCCCTGGCACTGTTTATCGGCGAGGCCTAAGAGCTAGGGCAAGAATTGTGGATTCGATTTTGCCAATACTAAGGGAGAGAAGGGAGGAAATTTCAAAGGGGAATTTAAGCCCTACAAGTGATGTGTTTTCTAGCTTTCTAGCTTTGAGAGATGAAAACCAAGAACCAGTTTCTGATGATCTGATTATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCACAGACTCTGAGATCTACAAAAAAGTTTTACAAGAACAAATAGACATTATAAGTGAGAGAGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATGATTCCTCCTGTGTTTGGAAGCTTTAGAAAAATACTCAAAGACACTCAATATGGTGGCTATGACATTCCCAAAGGATGGCAGGTGTTTTGGGCGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCGAGATTTGAAAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCATTCACACTTGCCCTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCACAACCATCCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTACCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGAATTCCTAAATTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

350

Amino Acids

40.54

Weight (kDa)

7.72

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 325 1.8e-58 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
AccB7I CCANNNNNTGG 2 cut(s) 732, 931
AciI CCGC 1 cut(s) 749
AclWI GGATC 1 cut(s) 797
AcsI RAATTY 4 cut(s) 336, 349, 1035, 1043
AfaI GTAC 1 cut(s) 962
AfiI CCNNNNNNNGG 5 cut(s) 671, 732, 863, 931, 1007
AgsI TTSAA 6 cut(s) 16, 32, 220, 342, 818, 908
AjnI CCWGG 3 cut(s) 182, 250, 883
AluBI AGCT 7 cut(s) 9, 130, 281, 381, 389, 508, 678
AluI AGCT 7 cut(s) 9, 130, 281, 381, 389, 508, 678
Alw26I GTCTC 2 cut(s) 237, 1016
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 2 cut(s) 419, 521
AoxI GGCC 2 cut(s) 271, 750
ApoI RAATTY 4 cut(s) 336, 349, 1035, 1043
AseI ATTAAT 2 cut(s) 59, 243
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 16, 109, 439, 946
AxyI CCTNAGG 1 cut(s) 966
BaeI ACNNNNGTAYC 2 cut(s) 944, 977
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 5 cut(s) 43, 726, 814, 929, 1009
BciT130I CCWGG 3 cut(s) 184, 252, 885
BcoDI GTCTC 2 cut(s) 237, 1016
BfaI CTAG 4 cut(s) 282, 378, 386, 900
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 525
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
Bme1390I CCNGG 3 cut(s) 184, 252, 885
BmrFI CCNGG 3 cut(s) 184, 252, 885
BmsI GCATC 2 cut(s) 155, 162
BpiI GAAGAC 1 cut(s) 20
BsaI GGTCTC 2 cut(s) 237, 1016
BsaJI CCNNGG 4 cut(s) 183, 250, 883, 1005
Bsc4I CCNNNNNNNGG 5 cut(s) 671, 732, 863, 931, 1007
Bse1I ACTGG 2 cut(s) 413, 462
Bse21I CCTNAGG 1 cut(s) 966
BseBI CCWGG 3 cut(s) 184, 252, 885
BseDI CCNNGG 4 cut(s) 183, 250, 883, 1005
BseGI GGATG 6 cut(s) 153, 178, 660, 737, 921, 1001
BseLI CCNNNNNNNGG 5 cut(s) 671, 732, 863, 931, 1007
BseMII CTCAG 2 cut(s) 513, 957
BseNI ACTGG 2 cut(s) 413, 462
BshFI GGCC 2 cut(s) 273, 752
BslI CCNNNNNNNGG 5 cut(s) 671, 732, 863, 931, 1007
BsmAI GTCTC 2 cut(s) 237, 1016
BsmI GAATGC 1 cut(s) 870
BsnI GGCC 2 cut(s) 273, 752
Bso31I GGTCTC 2 cut(s) 237, 1016
Bsp143I GATC 4 cut(s) 424, 525, 802, 1023
Bsp19I CCATGG 1 cut(s) 1005
BspACI CCGC 1 cut(s) 749
BspANI GGCC 2 cut(s) 273, 752
BspCNI CTCAG 2 cut(s) 514, 958
BspHI TCATGA 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 797
BspTNI GGTCTC 2 cut(s) 237, 1016
BsrI ACTGG 2 cut(s) 413, 462
BssECI CCNNGG 4 cut(s) 183, 250, 883, 1005
BssMI GATC 4 cut(s) 424, 525, 802, 1023
BssT1I CCWWGG 1 cut(s) 1005
Bst2UI CCWGG 3 cut(s) 184, 252, 885
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 275, 317, 488, 522, 966
BstDSI CCRYGG 1 cut(s) 1005
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 6 cut(s) 153, 178, 660, 737, 921, 1001
BstKTI GATC 4 cut(s) 427, 528, 805, 1026
BstMAI GTCTC 2 cut(s) 237, 1016
BstMBI GATC 4 cut(s) 424, 525, 802, 1023
BstMWI GCNNNNNNNGC 2 cut(s) 221, 598
BstNI CCWGG 3 cut(s) 184, 252, 885
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 182, 250, 883
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 2 cut(s) 273, 752
BtgI CCRYGG 1 cut(s) 1005
BtsCI GGATG 6 cut(s) 153, 178, 660, 737, 921, 1001
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 727
CaiI CAGNNNCTG 2 cut(s) 419, 521
CciI TCATGA 1 cut(s) 466
Csp6I GTAC 1 cut(s) 961
CspCI CAANNNNNGTGG 4 cut(s) 276, 311, 781, 816
CviAII CATG 7 cut(s) 70, 121, 467, 597, 627, 766, 1006
CviQI GTAC 1 cut(s) 961
DdeI CTNAG 5 cut(s) 275, 317, 488, 522, 966
DpnI GATC 4 cut(s) 426, 527, 804, 1025
DpnII GATC 4 cut(s) 424, 525, 802, 1023
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 1005
Eco147I AGGCCT 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 237, 1016
Eco81I CCTNAGG 1 cut(s) 966
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 1035
EcoRII CCWGG 3 cut(s) 182, 250, 883
EcoT14I CCWWGG 1 cut(s) 1005
ErhI CCWWGG 1 cut(s) 1005
FaeI CATG 7 cut(s) 73, 124, 470, 600, 630, 769, 1009
FatI CATG 7 cut(s) 69, 120, 466, 596, 626, 765, 1005
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 6 cut(s) 140, 185, 667, 744, 908, 988
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 4 cut(s) 282, 378, 386, 900
GluI GCNGC 1 cut(s) 750
HaeIII GGCC 2 cut(s) 273, 752
Hin1II CATG 7 cut(s) 73, 124, 470, 600, 630, 769, 1009
HincII GTYRAC 1 cut(s) 986
HindII GTYRAC 1 cut(s) 986
HindIII AAGCTT 2 cut(s) 128, 676
HinfI GANTC 3 cut(s) 299, 518, 658
HphI GGTGA 4 cut(s) 16, 109, 439, 946
Hpy166II GTNNAC 3 cut(s) 513, 961, 986
Hpy188I TCNGA 3 cut(s) 421, 429, 523
Hpy188III TCNNGA 5 cut(s) 13, 64, 467, 810, 1021
Hpy8I GTNNAC 3 cut(s) 513, 961, 986
HpyAV CCTTC 2 cut(s) 226, 321
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 598
HpyF3I CTNAG 5 cut(s) 275, 317, 488, 522, 966
Hsp92II CATG 7 cut(s) 73, 124, 470, 600, 630, 769, 1009
Kzo9I GATC 4 cut(s) 424, 525, 802, 1023
LweI GCATC 2 cut(s) 155, 162
MaeI CTAG 4 cut(s) 282, 378, 386, 900
MaeIII GTNAC 5 cut(s) 72, 115, 445, 934, 951
MalI GATC 4 cut(s) 426, 527, 804, 1025
MboI GATC 4 cut(s) 424, 525, 802, 1023
MboII GAAGA 6 cut(s) 20, 136, 227, 476, 593, 596
MflI RGATCY 1 cut(s) 525
MlyI GAGTC 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 4 cut(s) 59, 138, 243, 353
MslI CAYNNNNRTG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 184, 252, 885
Mva1269I GAATGC 1 cut(s) 870
MvaI CCWGG 3 cut(s) 184, 252, 885
MwoI GCNNNNNNNGC 2 cut(s) 221, 598
NcoI CCATGG 1 cut(s) 1005
NdeII GATC 4 cut(s) 424, 525, 802, 1023
NlaIII CATG 7 cut(s) 73, 124, 470, 600, 630, 769, 1009
NmuCI GTSAC 4 cut(s) 115, 445, 934, 951
PagI TCATGA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 727
PceI AGGCCT 1 cut(s) 273
PctI GAATGC 1 cut(s) 870
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 299, 658
PflMI CCANNNNNTGG 2 cut(s) 732, 931
PkrI GCNGC 1 cut(s) 751
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PshBI ATTAAT 2 cut(s) 59, 243
PsiI TTATAA 1 cut(s) 563
Psp6I CCWGG 3 cut(s) 182, 250, 883
PspEI GGTNACC 1 cut(s) 115
PspGI CCWGG 3 cut(s) 182, 250, 883
PstNI CAGNNNCTG 2 cut(s) 419, 521
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 1 cut(s) 962
RsaNI GTAC 1 cut(s) 961
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 4 cut(s) 59, 138, 243, 353
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 4 cut(s) 424, 525, 802, 1023
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 3 cut(s) 184, 252, 885
SfaNI GCATC 2 cut(s) 155, 162
SmiMI CAYNNNNRTG 1 cut(s) 452
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 1 cut(s) 749
SspMI CTAG 4 cut(s) 282, 378, 386, 900
StuI AGGCCT 1 cut(s) 273
StyD4I CCNGG 3 cut(s) 182, 250, 883
StyI CCWWGG 1 cut(s) 1005
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 302, 809
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 2 cut(s) 299, 658
Tru1I TTAA 4 cut(s) 59, 138, 243, 353
Tru9I TTAA 4 cut(s) 59, 138, 243, 353
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 4 cut(s) 115, 445, 934, 951
Tsp45I GTSAC 4 cut(s) 115, 445, 934, 951
TspDTI ATGAA 5 cut(s) 137, 198, 414, 632, 782
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 2 cut(s) 732, 931
VspI ATTAAT 2 cut(s) 59, 243
XapI RAATTY 4 cut(s) 336, 349, 1035, 1043
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 928
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 4 cut(s) 282, 378, 386, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.