Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001250

Physical Location & Seq

Genomic Coordinates Reverse (-)

2361709 .. 2362462

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02611.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAGTGTAGAATAAGACTGAATGGCTCGCGACAGTATGATAAGTATTATACACATTTACAATCGAAGACTGTGACAAGATCAGTTCTTGAAGTTGTTAGGTTTATTCTTTACGAGGTGACTCCAAAACTTATGAGAGAAGCCAAGAAAAAACGAAAAATGGAGACTCCTGATGAGACTAGTTCTCCAACTGTATTAATTGATGAAGACCTAAACATGTCACCGGAAGATATTGCTGCCGTTTTAAAAGTAGATGGGGAGACATACGTTGAAATGTGGTATCGCATAGCTTGGACTAACTTAGTTAACAGCACTGCAGTGAAGACGCCATCAGAAGCAAAATGGGAAGAACTGAAGGCTGCAAAACAGAAGGCCAAAACAGAGAATTGTACACCAAAATCGGATGTTGAAGCTGACAACTCGTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.56

Weight (kDa)

7.68

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02611 FvH4_4g02612 FvH4_5g14730 FvH4_5g20350 FvH4_6g23221
malus_domestica	MD12G1142400.v1.1
prunus_persica	Prupe.6G255700_v2.0.a1
pyrus_communis	pycom12g13720
rosa_laevigata	RLG00000009914 RLG00000009922 RLG00000009923 RLG00000022757 RLG00000023405 RLG00000023428
rosa_multiflora	Rmu_sc0001380.1_g000014 Rmu_sc0006160.1_g000004 Rmu_sc0007142.1_g000001 Rmu_sc0038645.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336460 Rroxscaffold_5G00336470 Rroxscaffold_5G00336560 Rroxscaffold_6G00392190 Rroxscaffold_6G00400500
rosa_rugosa	Rorug03G0191200 Rorug03G0330500 Rorug03G0330600
rosa_samantha	Rh2AG375900 Rh2CG353800 Rh3AG242100 Rh3AG305100 Rh3BG275700 Rh3BG277200 Rh3BG318200 Rh3CG338600 Rh3DG269100 Rh3DG340600 Rh4AG032000 Rh4AG032100 Rh4AG032700 Rh4AG181000 Rh4BG026100 Rh4BG026200 Rh4BG180200 Rh4CG035100 Rh4CG035200 Rh4CG035600 Rh4CG036600 Rh4CG192100 Rh4DG027700 Rh4DG027800 Rh4DG028400 Rh4DG176300
rosa_wichuraiana	Rw0G002680 Rw3G021640 Rw4G015120 Rw6G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	92, 272, 410
AhlI	ACTAGT	1 cut(s)	179
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	2 cut(s)	290, 413
AluI	AGCT	2 cut(s)	290, 413
Alw26I	GTCTC	3 cut(s)	158, 170, 254
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	236, 359
AseI	ATTAAT	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	130, 213
BbsI	GAAGAC	3 cut(s)	74, 213, 329
BbvI	GCAGC	2 cut(s)	223, 346
BccI	CCATC	2 cut(s)	248, 337
BceAI	ACGGC	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	158, 170, 254
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	237, 360
BlsI	GCNGC	2 cut(s)	238, 361
BpiI	GAAGAC	3 cut(s)	74, 213, 329
BsaHI	GRCGYC	1 cut(s)	326
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
BseGI	GGATG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	223, 346
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	158, 170, 254
BsnI	GGCC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	80
Bsp68I	TCGCGA	1 cut(s)	31
BspANI	GGCC	1 cut(s)	374
BspFNI	CGCG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	319
BsrGI	TGTACA	1 cut(s)	389
BssMI	GATC	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	36, 73, 193
BstACI	GRCGYC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	3 cut(s)	158, 170, 254
BstMBI	GATC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	223, 346
BstV2I	GAAGAC	3 cut(s)	74, 213, 329
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	2 cut(s)	312, 324
BtsIMutI	CAGTG	2 cut(s)	312, 324
BtuMI	TCGCGA	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	29
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	6 cut(s)	27, 143, 290, 359, 374, 413
CviKI_1	RGCY	6 cut(s)	27, 143, 290, 359, 374, 413
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DraI	TTTAAA	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	374
FaeI	CATG	1 cut(s)	220
FaiI	YATR	7 cut(s)	39, 51, 134, 218, 265, 287, 426
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	237, 360
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	237, 360
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	237, 360
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	121, 166
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	130, 213
Hpy166II	GTNNAC	2 cut(s)	307, 392
Hpy188I	TCNGA	2 cut(s)	334, 403
Hpy188III	TCNNGA	3 cut(s)	30, 89, 170
Hpy8I	GTNNAC	2 cut(s)	307, 392
HpyAV	CCTTC	2 cut(s)	349, 364
HpyCH4III	ACNGT	3 cut(s)	36, 73, 193
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	317, 362
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	183, 237
Lsp1109I	GCAGC	2 cut(s)	223, 346
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	73, 118, 219
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	5 cut(s)	79, 218, 239, 334, 359
MluCI	AATT	2 cut(s)	198, 385
MlyI	GAGTC	2 cut(s)	115, 160
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	3 cut(s)	197, 245, 306
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	31
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	3 cut(s)	73, 118, 219
NruI	TCGCGA	1 cut(s)	31
NspI	RCATGY	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	317
PciI	ACATGT	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	238, 361
PleI	GAGTC	2 cut(s)	115, 160
PpsI	GAGTC	2 cut(s)	115, 160
PscI	ACATGT	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	319
RruI	TCGCGA	1 cut(s)	31
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	197, 245, 306
SatI	GCNGC	2 cut(s)	237, 360
Sau3AI	GATC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	115, 160
SetI	ASST	6 cut(s)	104, 120, 213, 270, 292, 415
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	2 cut(s)	198, 385
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	36, 73, 193
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	198, 385
TatI	WGTACW	1 cut(s)	389
Tru1I	TTAA	3 cut(s)	197, 245, 306
Tru9I	TTAA	3 cut(s)	197, 245, 306
TscAI	CASTG	2 cut(s)	319, 324
TseFI	GTSAC	3 cut(s)	73, 118, 219
TseI	GCWGC	2 cut(s)	236, 359
Tsp45I	GTSAC	3 cut(s)	73, 118, 219
TspDTI	ATGAA	2 cut(s)	17, 219
TspRI	CASTG	2 cut(s)	319, 324
VspI	ATTAAT	1 cut(s)	197
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.