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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 284 |
| AcsI | RAATTY | 1 cut(s) | 314 |
| AdeI | CACNNNGTG | 1 cut(s) | 398 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AflIII | ACRYGT | 1 cut(s) | 435 |
| AgsI | TTSAA | 5 cut(s) | 119, 149, 228, 331, 505 |
| AluBI | AGCT | 2 cut(s) | 82, 292 |
| AluI | AGCT | 2 cut(s) | 82, 292 |
| Alw26I | GTCTC | 1 cut(s) | 422 |
| ApoI | RAATTY | 1 cut(s) | 314 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 476, 508 |
| AsuHPI | GGTGA | 1 cut(s) | 486 |
| BanI | GGYRCC | 1 cut(s) | 18 |
| BccI | CCATC | 1 cut(s) | 317 |
| BciVI | GTATCC | 1 cut(s) | 291 |
| BcoDI | GTCTC | 1 cut(s) | 422 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BfuI | GTATCC | 1 cut(s) | 291 |
| BmiI | GGNNCC | 1 cut(s) | 20 |
| BsaAI | YACGTR | 2 cut(s) | 207, 436 |
| BsaJI | CCNNGG | 1 cut(s) | 157 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| Bse1I | ACTGG | 1 cut(s) | 497 |
| BseDI | CCNNGG | 1 cut(s) | 157 |
| BseGI | GGATG | 2 cut(s) | 328, 340 |
| BseNI | ACTGG | 1 cut(s) | 497 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BshNI | GGYRCC | 1 cut(s) | 18 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BsmAI | GTCTC | 1 cut(s) | 422 |
| Bsp143I | GATC | 2 cut(s) | 23, 242 |
| BspACI | CCGC | 1 cut(s) | 284 |
| BspHI | TCATGA | 2 cut(s) | 217, 250 |
| BspLI | GGNNCC | 1 cut(s) | 20 |
| BspT107I | GGYRCC | 1 cut(s) | 18 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BsrI | ACTGG | 1 cut(s) | 497 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 157 |
| BssMI | GATC | 2 cut(s) | 23, 242 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 483 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstBAI | YACGTR | 2 cut(s) | 207, 436 |
| BstDSI | CCRYGG | 1 cut(s) | 157 |
| BstF5I | GGATG | 2 cut(s) | 328, 340 |
| BstKTI | GATC | 2 cut(s) | 26, 245 |
| BstMAI | GTCTC | 1 cut(s) | 422 |
| BstMBI | GATC | 2 cut(s) | 23, 242 |
| BstSNI | TACGTA | 1 cut(s) | 207 |
| BsuI | GTATCC | 1 cut(s) | 291 |
| BtgI | CCRYGG | 1 cut(s) | 157 |
| BtsCI | GGATG | 2 cut(s) | 328, 340 |
| CciI | TCATGA | 2 cut(s) | 217, 250 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| CviAII | CATG | 3 cut(s) | 218, 251, 311 |
| CviJI | RGCY | 3 cut(s) | 82, 292, 446 |
| CviKI_1 | RGCY | 3 cut(s) | 82, 292, 446 |
| DpnI | GATC | 2 cut(s) | 25, 244 |
| DpnII | GATC | 2 cut(s) | 23, 242 |
| DraIII | CACNNNGTG | 1 cut(s) | 398 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 483 |
| EarI | CTCTTC | 2 cut(s) | 90, 483 |
| Eco105I | TACGTA | 1 cut(s) | 207 |
| FaeI | CATG | 3 cut(s) | 221, 254, 314 |
| FatI | CATG | 3 cut(s) | 217, 250, 310 |
| FauNDI | CATATG | 1 cut(s) | 123 |
| FokI | GGATG | 2 cut(s) | 335, 347 |
| FspBI | CTAG | 1 cut(s) | 470 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 3 cut(s) | 221, 254, 314 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 80 |
| HinfI | GANTC | 5 cut(s) | 153, 186, 247, 341, 491 |
| HpaI | GTTAAC | 1 cut(s) | 76 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 486 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 262 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 4 cut(s) | 200, 218, 251, 537 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 262 |
| HpyAV | CCTTC | 3 cut(s) | 171, 325, 510 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 2 cut(s) | 206, 435 |
| HpySE526I | ACGT | 2 cut(s) | 206, 435 |
| Hsp92II | CATG | 3 cut(s) | 221, 254, 314 |
| KspAI | GTTAAC | 1 cut(s) | 76 |
| Kzo9I | GATC | 2 cut(s) | 23, 242 |
| LpnPI | CCDG | 3 cut(s) | 29, 398, 510 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MaeII | ACGT | 2 cut(s) | 206, 435 |
| MaeIII | GTNAC | 1 cut(s) | 492 |
| MalI | GATC | 2 cut(s) | 25, 244 |
| MboI | GATC | 2 cut(s) | 23, 242 |
| MboII | GAAGA | 3 cut(s) | 107, 120, 500 |
| MluCI | AATT | 2 cut(s) | 102, 314 |
| MlyI | GAGTC | 5 cut(s) | 147, 195, 241, 350, 500 |
| MmeI | TCCRAC | 1 cut(s) | 143 |
| MnlI | CCTC | 3 cut(s) | 331, 436, 444 |
| MseI | TTAA | 2 cut(s) | 75, 288 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspI | CCGG | 1 cut(s) | 16 |
| NdeI | CATATG | 1 cut(s) | 123 |
| NdeII | GATC | 2 cut(s) | 23, 242 |
| NlaIII | CATG | 3 cut(s) | 221, 254, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 20 |
| NmuCI | GTSAC | 1 cut(s) | 492 |
| PagI | TCATGA | 2 cut(s) | 217, 250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 19 |
| PleI | GAGTC | 5 cut(s) | 147, 194, 241, 349, 499 |
| PpsI | GAGTC | 5 cut(s) | 147, 194, 241, 349, 499 |
| Ppu21I | YACGTR | 2 cut(s) | 207, 436 |
| PspN4I | GGNNCC | 1 cut(s) | 20 |
| SaqAI | TTAA | 2 cut(s) | 75, 288 |
| Sau3AI | GATC | 2 cut(s) | 23, 242 |
| SchI | GAGTC | 5 cut(s) | 147, 195, 241, 350, 500 |
| SetI | ASST | 4 cut(s) | 84, 209, 294, 438 |
| SgrAI | CRCCGGYG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| SnaBI | TACGTA | 1 cut(s) | 207 |
| Sse9I | AATT | 2 cut(s) | 102, 314 |
| SsiI | CCGC | 1 cut(s) | 284 |
| SspMI | CTAG | 1 cut(s) | 470 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaiI | ACGT | 2 cut(s) | 209, 438 |
| TaqI | TCGA | 1 cut(s) | 245 |
| TasI | AATT | 2 cut(s) | 102, 314 |
| Tru1I | TTAA | 2 cut(s) | 75, 288 |
| Tru9I | TTAA | 2 cut(s) | 75, 288 |
| TseFI | GTSAC | 1 cut(s) | 492 |
| Tsp45I | GTSAC | 1 cut(s) | 492 |
| TspDTI | ATGAA | 3 cut(s) | 81, 327, 537 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| XapI | RAATTY | 1 cut(s) | 314 |
| XspI | CTAG | 1 cut(s) | 470 |